Wall clock time and date at job start Wed Apr 1 2020 02:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86800 * 120.00144 * 2 1 4 4 H 1.48504 * 109.47025 * 240.00525 * 3 2 1 5 5 H 1.48499 * 109.46850 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47416 * 120.00107 * 3 2 1 7 7 C 1.38813 * 119.99869 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99822 * 169.37121 * 7 2 1 9 9 N 1.36943 * 119.99644 * 349.35938 * 7 2 1 10 10 C 1.46926 * 120.62328 * 148.26917 * 9 7 2 11 11 C 1.53192 * 108.77457 * 126.41457 * 10 9 7 12 12 C 1.53041 * 109.34088 * 54.61574 * 11 10 9 13 13 C 1.53039 * 109.53798 * 298.68509 * 12 11 10 14 14 H 1.09000 * 109.49848 * 301.34679 * 13 12 11 15 15 C 1.53005 * 109.49908 * 181.28249 * 13 12 11 16 16 N 1.46499 * 109.47360 * 175.06488 * 15 13 12 17 17 C 1.34771 * 120.00094 * 180.02562 * 16 15 13 18 18 O 1.21280 * 120.00078 * 4.56732 * 17 16 15 19 19 C 1.50699 * 119.99945 * 184.57607 * 17 16 15 20 20 H 1.08997 * 109.39964 * 327.14280 * 19 17 16 21 21 C 1.53069 * 109.43449 * 207.25452 * 19 17 16 22 22 C 1.53404 * 108.34433 * 191.74342 * 21 19 17 23 23 O 1.42904 * 108.33451 * 64.67656 * 22 21 19 24 24 C 1.35847 * 117.87133 * 310.79960 * 23 22 21 25 25 C 1.39149 * 118.49420 * 197.02520 * 24 23 22 26 26 C 1.37967 * 120.21040 * 180.41343 * 25 24 23 27 27 C 1.38286 * 119.95976 * 0.02562 * 26 25 24 28 28 C 1.38104 * 119.98582 * 359.91566 * 27 26 25 29 29 C 1.38367 * 121.80584 * 17.31044 * 24 23 22 30 30 C 1.46916 * 120.63260 * 328.29041 * 9 7 2 31 31 H 0.97009 * 120.00056 * 359.97438 * 1 2 3 32 32 H 1.08996 * 109.58372 * 246.19654 * 10 9 7 33 33 H 1.08996 * 109.59200 * 6.48454 * 10 9 7 34 34 H 1.09002 * 109.49787 * 174.58272 * 11 10 9 35 35 H 1.09005 * 109.49672 * 294.64832 * 11 10 9 36 36 H 1.08995 * 109.48825 * 178.64968 * 12 11 10 37 37 H 1.08999 * 109.43429 * 58.68751 * 12 11 10 38 38 H 1.08998 * 109.46725 * 55.06485 * 15 13 12 39 39 H 1.09002 * 109.46860 * 295.06548 * 15 13 12 40 40 H 0.96998 * 120.00011 * 0.02562 * 16 15 13 41 41 H 1.08998 * 109.69628 * 311.46701 * 21 19 17 42 42 H 1.09002 * 109.69545 * 72.01989 * 21 19 17 43 43 H 1.09006 * 109.68565 * 184.44281 * 22 21 19 44 44 H 1.09000 * 109.68503 * 305.00098 * 22 21 19 45 45 H 1.07997 * 119.89348 * 0.43656 * 25 24 23 46 46 H 1.08001 * 120.02163 * 179.97438 * 26 25 24 47 47 H 1.08005 * 120.01002 * 179.97438 * 27 26 25 48 48 H 1.08002 * 119.84459 * 180.02562 * 28 27 26 49 49 H 1.09000 * 109.58938 * 113.80045 * 30 9 7 50 50 H 1.09001 * 109.70897 * 353.44092 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1039 1.6964 -1.2126 5 1 1.2852 2.7464 0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0102 -1.2022 -0.0005 8 1 3.0763 -1.2101 -0.1731 9 7 1.3431 -2.3780 0.2179 10 6 1.7954 -3.6240 -0.4157 11 6 1.9886 -4.6874 0.6700 12 6 0.6969 -4.8264 1.4788 13 6 0.3729 -3.4942 2.1588 14 1 1.2004 -3.2058 2.8070 15 6 -0.9012 -3.6431 2.9928 16 7 -1.1459 -2.4045 3.7360 17 6 -2.2201 -2.3044 4.5437 18 8 -2.9380 -3.2659 4.7201 19 6 -2.5294 -0.9976 5.2276 20 1 -1.5981 -0.4792 5.4559 21 6 -3.2919 -1.2705 6.5265 22 6 -3.8487 0.0603 7.0482 23 8 -4.8064 0.5472 6.1059 24 6 -4.4475 0.5824 4.7962 25 6 -5.1959 1.3665 3.9237 26 6 -4.8679 1.4216 2.5847 27 6 -3.7926 0.6953 2.1067 28 6 -3.0469 -0.0830 2.9700 29 6 -3.3701 -0.1406 4.3156 30 6 0.1613 -2.4173 1.0899 31 1 -0.4851 0.8401 0.0004 32 1 1.0456 -3.9635 -1.1303 33 1 2.7395 -3.4499 -0.9317 34 1 2.2310 -5.6427 0.2045 35 1 2.8017 -4.3883 1.3315 36 1 0.8238 -5.5994 2.2367 37 1 -0.1204 -5.1022 0.8124 38 1 -0.7823 -4.4697 3.6933 39 1 -1.7456 -3.8441 2.3335 40 1 -0.5349 -1.6566 3.6467 41 1 -4.1125 -1.9612 6.3326 42 1 -2.6163 -1.7010 7.2656 43 1 -4.3292 -0.0961 8.0141 44 1 -3.0382 0.7815 7.1533 45 1 -6.0359 1.9341 4.2959 46 1 -5.4512 2.0308 1.9101 47 1 -3.5354 0.7375 1.0585 48 1 -2.2072 -0.6490 2.5943 49 1 -0.7217 -2.6584 0.4981 50 1 0.0261 -1.4479 1.5697 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266057600.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:37 Heat of formation + Delta-G solvation = -57.949818 kcal Electronic energy + Delta-G solvation = -31447.170795 eV Core-core repulsion = 27438.548511 eV Total energy + Delta-G solvation = -4008.622283 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.11270 -40.51685 -39.30566 -38.45409 -36.19450 -35.31253 -34.77606 -32.53721 -31.67435 -31.44015 -31.17671 -28.07802 -27.20509 -26.28058 -24.69286 -23.86624 -23.60923 -22.44883 -21.84953 -20.93179 -20.46154 -18.97476 -18.72305 -18.00339 -17.72256 -17.21695 -16.98073 -16.81341 -16.13444 -15.92719 -15.73005 -15.39033 -15.15160 -15.12429 -14.84771 -14.72941 -14.52562 -14.26335 -14.22052 -14.00858 -13.77893 -13.55561 -13.40000 -12.93427 -12.88973 -12.81496 -12.53674 -12.49252 -12.26969 -12.06929 -12.00260 -11.84940 -11.79690 -11.63829 -11.54746 -11.31753 -11.09690 -10.89439 -10.52677 -10.09345 -9.81157 -9.16550 -8.56950 -7.82049 -5.33384 0.26162 0.42501 1.48260 1.49476 1.50551 1.55682 2.12578 2.35183 2.52102 2.77165 3.31202 3.42163 3.55852 3.61134 3.69979 3.82676 4.00056 4.07098 4.11180 4.14478 4.15279 4.20224 4.34344 4.37903 4.48861 4.51155 4.52870 4.54301 4.63584 4.66425 4.79851 4.87831 4.88034 4.90499 5.01747 5.04181 5.08528 5.15256 5.23257 5.27962 5.35195 5.38650 5.44039 5.47270 5.57527 5.61846 5.69523 5.79323 5.80889 6.43216 6.44889 6.45361 7.11677 7.20746 7.88756 8.43128 9.21974 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010259 B = 0.004040 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2728.527199 B = 6928.513758 C = 8720.094768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.035 4.035 3 Si 0.958 3.042 4 H -0.282 1.282 5 H -0.294 1.294 6 H -0.277 1.277 7 C -0.269 4.269 8 H 0.060 0.940 9 N -0.610 5.610 10 C 0.136 3.864 11 C -0.121 4.121 12 C -0.099 4.099 13 C -0.113 4.113 14 H 0.071 0.929 15 C 0.138 3.862 16 N -0.715 5.715 17 C 0.526 3.474 18 O -0.576 6.576 19 C -0.062 4.062 20 H 0.121 0.879 21 C -0.140 4.140 22 C 0.061 3.939 23 O -0.325 6.325 24 C 0.129 3.871 25 C -0.157 4.157 26 C -0.080 4.080 27 C -0.159 4.159 28 C -0.094 4.094 29 C -0.165 4.165 30 C 0.193 3.807 31 H 0.251 0.749 32 H 0.008 0.992 33 H 0.050 0.950 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.079 0.921 37 H 0.052 0.948 38 H 0.074 0.926 39 H 0.047 0.953 40 H 0.408 0.592 41 H 0.069 0.931 42 H 0.110 0.890 43 H 0.142 0.858 44 H 0.081 0.919 45 H 0.153 0.847 46 H 0.156 0.844 47 H 0.120 0.880 48 H 0.115 0.885 49 H -0.016 1.016 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.580 -0.713 13.013 14.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.231 4.231 3 Si 0.786 3.214 4 H -0.208 1.208 5 H -0.220 1.220 6 H -0.203 1.203 7 C -0.400 4.400 8 H 0.078 0.922 9 N -0.333 5.333 10 C 0.011 3.989 11 C -0.160 4.160 12 C -0.137 4.137 13 C -0.133 4.133 14 H 0.089 0.911 15 C 0.014 3.986 16 N -0.366 5.366 17 C 0.313 3.687 18 O -0.455 6.455 19 C -0.083 4.083 20 H 0.139 0.861 21 C -0.178 4.178 22 C -0.013 4.013 23 O -0.239 6.239 24 C 0.084 3.916 25 C -0.175 4.175 26 C -0.098 4.098 27 C -0.178 4.178 28 C -0.113 4.113 29 C -0.166 4.166 30 C 0.067 3.933 31 H 0.060 0.940 32 H 0.026 0.974 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.244 0.756 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.159 0.841 44 H 0.099 0.901 45 H 0.170 0.830 46 H 0.173 0.827 47 H 0.138 0.862 48 H 0.133 0.867 49 H 0.002 0.998 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.345 -1.215 13.180 14.678 hybrid contribution 0.968 1.069 -0.869 1.684 sum -5.377 -0.146 12.311 13.434 Atomic orbital electron populations 1.70105 1.06046 1.25709 1.54750 1.25739 0.96110 1.00677 1.00616 0.85508 0.77712 0.79982 0.78163 1.20802 1.22028 1.20326 1.19382 0.91037 0.85142 1.44405 0.92244 1.44240 1.32498 1.04251 1.52348 1.21104 0.97008 0.87001 0.93830 1.21866 0.97344 0.98798 0.98002 1.21352 0.97693 0.95601 0.99041 1.21937 0.95927 0.98196 0.97267 0.91086 1.21284 0.97105 0.86333 0.93894 1.46178 1.27173 1.18133 1.45089 1.20599 0.79820 0.89709 0.78589 1.90639 1.50149 1.40521 1.64240 1.20229 1.00600 0.92128 0.95350 0.86093 1.22130 1.01375 0.99029 0.95222 1.23303 0.92618 0.93717 0.91694 1.85970 1.42886 1.81337 1.13717 1.18774 0.93542 0.94869 0.84438 1.20868 1.02563 1.01275 0.92781 1.21258 0.95946 0.97616 0.94988 1.21219 0.97217 0.99081 1.00233 1.21206 0.99334 0.98092 0.92631 1.19436 0.99919 1.02404 0.94842 1.20557 0.86766 0.96653 0.89339 0.94013 0.97430 0.93132 0.90026 0.92450 0.90273 0.92908 0.90744 0.93495 0.75620 0.91196 0.87177 0.84066 0.90060 0.82969 0.82674 0.86231 0.86686 0.99753 0.91522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.65 11.07 21.65 0.24 -50.41 16 2 C -0.03 -1.83 5.05 84.86 0.43 -1.40 16 3 Si 0.96 42.97 29.57 68.60 2.03 45.00 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.27 -14.24 9.58 84.03 0.80 -13.43 16 8 H 0.06 3.11 7.85 -2.91 -0.02 3.08 16 9 N -0.61 -29.41 2.98 -699.12 -2.09 -31.50 16 10 C 0.14 5.50 6.52 86.36 0.56 6.07 16 11 C -0.12 -3.79 6.08 30.67 0.19 -3.61 16 12 C -0.10 -2.99 5.17 30.62 0.16 -2.83 16 13 C -0.11 -3.87 2.37 -10.71 -0.03 -3.90 16 14 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.14 4.44 5.07 86.38 0.44 4.88 16 16 N -0.72 -22.39 4.17 -463.06 -1.93 -24.32 16 17 C 0.53 16.81 6.11 87.66 0.54 17.35 16 18 O -0.58 -21.98 15.90 -3.03 -0.05 -22.03 16 19 C -0.06 -1.63 2.70 -12.24 -0.03 -1.66 16 20 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 21 C -0.14 -2.97 5.26 30.75 0.16 -2.80 16 22 C 0.06 1.04 7.03 72.12 0.51 1.55 16 23 O -0.32 -7.91 10.27 -91.83 -0.94 -8.85 16 24 C 0.13 3.61 6.47 22.52 0.15 3.76 16 25 C -0.16 -3.98 9.94 22.42 0.22 -3.76 16 26 C -0.08 -2.09 10.04 22.22 0.22 -1.87 16 27 C -0.16 -5.14 10.04 22.25 0.22 -4.91 16 28 C -0.09 -3.23 9.10 22.30 0.20 -3.02 16 29 C -0.16 -4.97 5.43 -19.75 -0.11 -5.07 16 30 C 0.19 8.63 4.33 86.37 0.37 9.00 16 31 H 0.25 13.49 8.31 -92.70 -0.77 12.71 16 32 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.41 12.49 7.46 -92.71 -0.69 11.80 16 41 H 0.07 1.85 7.44 -2.39 -0.02 1.83 16 42 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.14 1.52 8.14 -2.38 -0.02 1.50 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 46 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 47 H 0.12 4.01 8.06 -2.91 -0.02 3.99 16 48 H 0.12 4.37 6.22 -2.91 -0.02 4.35 16 49 H -0.02 -0.79 8.14 -2.39 -0.02 -0.81 16 50 H 0.07 3.25 5.34 -2.39 -0.01 3.24 16 Total: -1.00 -66.79 392.15 2.51 -64.27 By element: Atomic # 1 Polarization: 33.27 SS G_CDS: 0.25 Total: 33.52 kcal Atomic # 6 Polarization: -10.68 SS G_CDS: 5.01 Total: -5.67 kcal Atomic # 7 Polarization: -102.45 SS G_CDS: -3.78 Total: -106.23 kcal Atomic # 8 Polarization: -29.89 SS G_CDS: -0.99 Total: -30.88 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -66.79 2.51 -64.27 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266057600.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.322 kcal (2) G-P(sol) polarization free energy of solvation -66.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds