Wall clock time and date at job start Wed Apr 1 2020 02:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48496 * 109.46912 * 269.99551 * 3 2 1 5 5 H 1.48500 * 109.47131 * 29.99755 * 3 2 1 6 6 H 1.48501 * 109.47253 * 149.99637 * 3 2 1 7 7 C 1.38812 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99758 * 169.40685 * 7 2 1 9 9 N 1.36937 * 119.99913 * 349.40159 * 7 2 1 10 10 C 1.46926 * 120.63361 * 328.31562 * 9 7 2 11 11 C 1.53196 * 108.77744 * 233.60991 * 10 9 7 12 12 C 1.53039 * 109.30960 * 305.36315 * 11 10 9 13 13 C 1.53035 * 109.53622 * 61.36736 * 12 11 10 14 14 H 1.08992 * 109.50451 * 58.61897 * 13 12 11 15 15 C 1.53003 * 109.49575 * 178.68518 * 13 12 11 16 16 N 1.46500 * 109.47416 * 184.93641 * 15 13 12 17 17 C 1.34775 * 120.00364 * 179.97438 * 16 15 13 18 18 O 1.21284 * 119.99857 * 4.59752 * 17 16 15 19 19 C 1.50699 * 120.00085 * 184.31917 * 17 16 15 20 20 H 1.08994 * 109.43527 * 327.25175 * 19 17 16 21 21 C 1.53078 * 109.43801 * 207.33362 * 19 17 16 22 22 C 1.53408 * 108.29248 * 191.74777 * 21 19 17 23 23 O 1.42830 * 108.36941 * 64.74468 * 22 21 19 24 24 C 1.35848 * 117.86451 * 310.84995 * 23 22 21 25 25 C 1.39140 * 118.50004 * 197.02131 * 24 23 22 26 26 C 1.37966 * 120.22029 * 180.18366 * 25 24 23 27 27 C 1.38294 * 119.95443 * 0.02562 * 26 25 24 28 28 C 1.38100 * 119.98079 * 359.92625 * 27 26 25 29 29 C 1.38367 * 121.80659 * 17.07669 * 24 23 22 30 30 C 1.46934 * 120.60553 * 148.33578 * 9 7 2 31 31 H 0.97004 * 119.99515 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.59014 * 113.81744 * 10 9 7 33 33 H 1.09009 * 109.70281 * 353.46608 * 10 9 7 34 34 H 1.08995 * 109.49672 * 185.40896 * 11 10 9 35 35 H 1.09001 * 109.49812 * 65.31529 * 11 10 9 36 36 H 1.08995 * 109.46078 * 301.34099 * 12 11 10 37 37 H 1.09001 * 109.44367 * 181.37802 * 12 11 10 38 38 H 1.09002 * 109.47507 * 64.92846 * 15 13 12 39 39 H 1.08999 * 109.46726 * 304.92988 * 15 13 12 40 40 H 0.97006 * 119.99521 * 359.97438 * 16 15 13 41 41 H 1.09000 * 109.69694 * 311.44619 * 21 19 17 42 42 H 1.08993 * 109.69519 * 72.04671 * 21 19 17 43 43 H 1.08993 * 109.68415 * 184.46952 * 22 21 19 44 44 H 1.09001 * 109.68425 * 304.99179 * 22 21 19 45 45 H 1.08007 * 119.89322 * 0.16279 * 25 24 23 46 46 H 1.08002 * 120.02603 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.00807 * 179.90361 * 27 26 25 48 48 H 1.08007 * 119.84119 * 180.02562 * 28 27 26 49 49 H 1.09005 * 109.61424 * 6.62068 * 30 9 7 50 50 H 1.08996 * 109.56432 * 246.19619 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0764 -1.2102 -0.1714 9 7 1.3431 -2.3778 0.2192 10 6 0.1604 -2.4167 1.0901 11 6 0.3712 -3.4923 2.1603 12 6 0.6958 -4.8249 1.4814 13 6 1.9887 -4.6865 0.6744 14 1 2.8008 -4.3869 1.3368 15 6 2.3300 -6.0281 0.0228 16 7 3.6267 -5.9277 -0.6516 17 6 4.1343 -6.9955 -1.2987 18 8 3.4816 -8.0132 -1.3943 19 6 5.5103 -6.9227 -1.9088 20 1 5.7004 -5.9067 -2.2546 21 6 5.5938 -7.8881 -3.0938 22 6 7.0655 -8.0167 -3.5074 23 8 7.7832 -8.6262 -2.4334 24 6 7.6097 -8.1190 -1.1852 25 6 8.5409 -8.4405 -0.2025 26 6 8.3971 -7.9479 1.0782 27 6 7.3242 -7.1322 1.3879 28 6 6.3986 -6.8103 0.4148 29 6 6.5390 -7.3000 -0.8731 30 6 1.7971 -3.6243 -0.4126 31 1 -0.4850 0.8401 -0.0004 32 1 -0.7219 -2.6586 0.4976 33 1 0.0244 -1.4467 1.5686 34 1 -0.5370 -3.5980 2.7537 35 1 1.1983 -3.2033 2.8087 36 1 -0.1208 -5.1011 0.8144 37 1 0.8221 -5.5974 2.2400 38 1 1.5606 -6.2845 -0.7055 39 1 2.3778 -6.8023 0.7886 40 1 4.1200 -5.0927 -0.6323 41 1 5.2080 -8.8644 -2.8003 42 1 5.0106 -7.4975 -3.9277 43 1 7.1432 -8.6374 -4.3999 44 1 7.4775 -7.0282 -3.7106 45 1 9.3789 -9.0780 -0.4430 46 1 9.1220 -8.1991 1.8383 47 1 7.2099 -6.7474 2.3905 48 1 5.5617 -6.1727 0.6591 49 1 2.7433 -3.4511 -0.9253 50 1 1.0485 -3.9645 -1.1281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266057610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:42 Heat of formation + Delta-G solvation = -41.501069 kcal Electronic energy + Delta-G solvation = -30538.824769 eV Core-core repulsion = 26530.915757 eV Total energy + Delta-G solvation = -4007.909012 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.28057 -39.47470 -37.83330 -37.72300 -34.90576 -34.43873 -33.01608 -30.98575 -30.47807 -30.43387 -30.32435 -27.03367 -25.37870 -25.07155 -23.91795 -22.82563 -22.15410 -21.15938 -20.78728 -19.94113 -19.08290 -18.18972 -17.15982 -16.94929 -16.66953 -16.36084 -15.85423 -15.20643 -15.16191 -14.86911 -14.55273 -14.23704 -14.01968 -13.89685 -13.72161 -13.51481 -13.43473 -13.30522 -12.81866 -12.72879 -12.35807 -12.23468 -12.19847 -12.13529 -11.74823 -11.35053 -11.27334 -11.13100 -11.01073 -10.87508 -10.76761 -10.54967 -10.27209 -10.22094 -10.02299 -9.92169 -9.59337 -9.46174 -9.01995 -8.98198 -8.52207 -8.38644 -6.65548 -5.82817 -3.31673 1.03747 1.20691 2.56848 2.98902 3.16406 3.32832 3.39882 3.41044 3.56570 4.23217 4.33797 4.42769 4.44009 4.62834 4.85298 4.86470 4.88764 5.00493 5.08201 5.17610 5.23235 5.27108 5.28458 5.30949 5.39384 5.43773 5.58677 5.60884 5.74832 5.79839 5.85837 5.91553 5.96731 6.04403 6.18896 6.19918 6.29336 6.31641 6.34388 6.45272 6.53486 6.55855 6.67272 6.73938 6.83233 6.92785 7.18101 7.37951 7.49632 7.66817 7.73919 8.18578 8.43054 9.17716 9.79131 10.37669 11.25005 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.002639 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.851895 B =10607.085147 C =11047.377129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.005 3.995 3 Si 0.904 3.096 4 H -0.286 1.286 5 H -0.289 1.289 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.063 0.937 9 N -0.591 5.591 10 C 0.170 3.830 11 C -0.142 4.142 12 C -0.099 4.099 13 C -0.117 4.117 14 H 0.072 0.928 15 C 0.126 3.874 16 N -0.722 5.722 17 C 0.525 3.475 18 O -0.538 6.538 19 C -0.065 4.065 20 H 0.104 0.896 21 C -0.146 4.146 22 C 0.063 3.937 23 O -0.316 6.316 24 C 0.141 3.859 25 C -0.152 4.152 26 C -0.085 4.085 27 C -0.149 4.149 28 C -0.082 4.082 29 C -0.151 4.151 30 C 0.154 3.846 31 H 0.254 0.746 32 H 0.017 0.983 33 H 0.087 0.913 34 H 0.049 0.951 35 H 0.053 0.947 36 H 0.056 0.944 37 H 0.046 0.954 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.403 0.597 41 H 0.094 0.906 42 H 0.090 0.910 43 H 0.112 0.888 44 H 0.067 0.933 45 H 0.131 0.869 46 H 0.129 0.871 47 H 0.126 0.874 48 H 0.129 0.871 49 H 0.049 0.951 50 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.141 -15.454 -1.168 20.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.193 4.193 3 Si 0.733 3.267 4 H -0.213 1.213 5 H -0.215 1.215 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.181 4.181 12 C -0.138 4.138 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.002 3.998 16 N -0.374 5.374 17 C 0.310 3.690 18 O -0.414 6.414 19 C -0.086 4.086 20 H 0.122 0.878 21 C -0.184 4.184 22 C -0.012 4.012 23 O -0.230 6.230 24 C 0.096 3.904 25 C -0.170 4.170 26 C -0.103 4.103 27 C -0.167 4.167 28 C -0.100 4.100 29 C -0.152 4.152 30 C 0.028 3.972 31 H 0.064 0.936 32 H 0.035 0.965 33 H 0.105 0.895 34 H 0.068 0.932 35 H 0.072 0.928 36 H 0.075 0.925 37 H 0.065 0.935 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.239 0.761 41 H 0.113 0.887 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.085 0.915 45 H 0.149 0.851 46 H 0.147 0.853 47 H 0.144 0.856 48 H 0.146 0.854 49 H 0.068 0.932 50 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 13.647 -16.169 -1.294 21.198 hybrid contribution 0.356 1.553 -0.010 1.593 sum 14.003 -14.616 -1.304 20.283 Atomic orbital electron populations 1.69984 1.05294 1.25516 1.53909 1.25174 0.95391 0.98415 1.00361 0.86287 0.79087 0.83583 0.77728 1.21333 1.21545 1.20442 1.19127 0.90731 0.83954 1.44724 0.91955 1.43984 1.32247 1.03343 1.51782 1.20796 0.88118 0.97113 0.89525 1.22185 0.99947 0.96408 0.99592 1.21335 0.96423 0.97770 0.98223 1.21958 0.98682 0.93967 0.99204 0.90919 1.21497 0.83955 0.98178 0.96140 1.46204 1.22468 1.14242 1.54475 1.20155 0.87179 0.83468 0.78191 1.90687 1.60926 1.30909 1.58900 1.20174 0.91561 1.01927 0.94957 0.87777 1.22152 0.97144 1.01620 0.97465 1.23014 0.90660 0.99146 0.88358 1.85985 1.66526 1.56578 1.13899 1.18626 0.93158 0.93565 0.85069 1.20582 0.99491 1.04488 0.92448 1.20971 0.97604 0.96200 0.95481 1.21047 0.95541 1.00475 0.99674 1.21112 0.98951 0.98248 0.91722 1.19353 0.96454 1.03644 0.95743 1.20901 0.97477 0.86893 0.91965 0.93561 0.96478 0.89516 0.93212 0.92804 0.92484 0.93484 0.91453 0.91989 0.76125 0.88725 0.89168 0.87012 0.91494 0.85144 0.85315 0.85588 0.85360 0.93245 0.96378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.69 11.07 55.49 0.61 -25.08 16 2 C 0.01 0.15 5.05 -17.43 -0.09 0.06 16 3 Si 0.90 21.11 29.57 -169.99 -5.03 16.08 16 4 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 7 C -0.26 -6.75 9.58 -15.06 -0.14 -6.90 16 8 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 9 N -0.59 -14.20 2.98 -172.31 -0.51 -14.71 16 10 C 0.17 3.95 5.25 -3.71 -0.02 3.93 16 11 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 12 C -0.10 -1.59 5.17 -26.69 -0.14 -1.73 16 13 C -0.12 -1.85 2.37 -90.50 -0.21 -2.07 16 14 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 15 C 0.13 1.77 5.07 -4.04 -0.02 1.75 16 16 N -0.72 -9.18 4.18 -60.29 -0.25 -9.43 16 17 C 0.52 7.11 6.11 -10.99 -0.07 7.04 16 18 O -0.54 -9.19 15.89 5.55 0.09 -9.10 16 19 C -0.06 -0.71 2.70 -92.85 -0.25 -0.96 16 20 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.15 -1.43 5.26 -26.48 -0.14 -1.57 16 22 C 0.06 0.52 7.03 37.37 0.26 0.78 16 23 O -0.32 -3.46 10.27 -19.26 -0.20 -3.66 16 24 C 0.14 1.63 6.47 -39.20 -0.25 1.37 16 25 C -0.15 -1.54 9.94 -39.35 -0.39 -1.93 16 26 C -0.08 -0.78 10.04 -39.66 -0.40 -1.18 16 27 C -0.15 -1.50 10.04 -39.61 -0.40 -1.89 16 28 C -0.08 -0.93 9.10 -39.53 -0.36 -1.28 16 29 C -0.15 -1.75 5.43 -104.44 -0.57 -2.31 16 30 C 0.15 3.01 5.60 -3.71 -0.02 2.99 16 31 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 2.27 6.13 -51.92 -0.32 1.95 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 40 H 0.40 4.59 7.45 -40.82 -0.30 4.28 16 41 H 0.09 1.13 7.44 -51.93 -0.39 0.74 16 42 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.11 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.13 1.10 8.06 -52.48 -0.42 0.67 16 46 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 48 H 0.13 1.40 6.22 -52.48 -0.33 1.07 16 49 H 0.05 0.92 7.14 -51.93 -0.37 0.55 16 50 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 392.14 15.07 5.91 5.91 Total: -1.00 -31.82 392.14 -10.77 -42.59 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -8.02 Total: 4.07 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -3.37 Total: -6.67 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -0.15 Total: -49.22 kcal Atomic # 8 Polarization: -12.65 SS G_CDS: -0.11 Total: -12.76 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -31.82 -10.77 -42.59 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266057610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.089 kcal (2) G-P(sol) polarization free energy of solvation -31.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds