Wall clock time and date at job start Wed Apr 1 2020 02:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86801 * 120.00079 * 2 1 4 4 H 1.48496 * 109.46912 * 269.99551 * 3 2 1 5 5 H 1.48500 * 109.47131 * 29.99755 * 3 2 1 6 6 H 1.48501 * 109.47253 * 149.99637 * 3 2 1 7 7 C 1.38812 * 119.99882 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99758 * 169.40685 * 7 2 1 9 9 N 1.36937 * 119.99913 * 349.40159 * 7 2 1 10 10 C 1.46926 * 120.63361 * 328.31562 * 9 7 2 11 11 C 1.53196 * 108.77744 * 233.60991 * 10 9 7 12 12 C 1.53039 * 109.30960 * 305.36315 * 11 10 9 13 13 C 1.53035 * 109.53622 * 61.36736 * 12 11 10 14 14 H 1.08992 * 109.50451 * 58.61897 * 13 12 11 15 15 C 1.53003 * 109.49575 * 178.68518 * 13 12 11 16 16 N 1.46500 * 109.47416 * 184.93641 * 15 13 12 17 17 C 1.34775 * 120.00364 * 179.97438 * 16 15 13 18 18 O 1.21284 * 119.99857 * 4.59752 * 17 16 15 19 19 C 1.50699 * 120.00085 * 184.31917 * 17 16 15 20 20 H 1.08994 * 109.43527 * 327.25175 * 19 17 16 21 21 C 1.53078 * 109.43801 * 207.33362 * 19 17 16 22 22 C 1.53408 * 108.29248 * 191.74777 * 21 19 17 23 23 O 1.42830 * 108.36941 * 64.74468 * 22 21 19 24 24 C 1.35848 * 117.86451 * 310.84995 * 23 22 21 25 25 C 1.39140 * 118.50004 * 197.02131 * 24 23 22 26 26 C 1.37966 * 120.22029 * 180.18366 * 25 24 23 27 27 C 1.38294 * 119.95443 * 0.02562 * 26 25 24 28 28 C 1.38100 * 119.98079 * 359.92625 * 27 26 25 29 29 C 1.38367 * 121.80659 * 17.07669 * 24 23 22 30 30 C 1.46934 * 120.60553 * 148.33578 * 9 7 2 31 31 H 0.97004 * 119.99515 * 0.02562 * 1 2 3 32 32 H 1.08996 * 109.59014 * 113.81744 * 10 9 7 33 33 H 1.09009 * 109.70281 * 353.46608 * 10 9 7 34 34 H 1.08995 * 109.49672 * 185.40896 * 11 10 9 35 35 H 1.09001 * 109.49812 * 65.31529 * 11 10 9 36 36 H 1.08995 * 109.46078 * 301.34099 * 12 11 10 37 37 H 1.09001 * 109.44367 * 181.37802 * 12 11 10 38 38 H 1.09002 * 109.47507 * 64.92846 * 15 13 12 39 39 H 1.08999 * 109.46726 * 304.92988 * 15 13 12 40 40 H 0.97006 * 119.99521 * 359.97438 * 16 15 13 41 41 H 1.09000 * 109.69694 * 311.44619 * 21 19 17 42 42 H 1.08993 * 109.69519 * 72.04671 * 21 19 17 43 43 H 1.08993 * 109.68415 * 184.46952 * 22 21 19 44 44 H 1.09001 * 109.68425 * 304.99179 * 22 21 19 45 45 H 1.08007 * 119.89322 * 0.16279 * 25 24 23 46 46 H 1.08002 * 120.02603 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.00807 * 179.90361 * 27 26 25 48 48 H 1.08007 * 119.84119 * 180.02562 * 28 27 26 49 49 H 1.09005 * 109.61424 * 6.62068 * 30 9 7 50 50 H 1.08996 * 109.56432 * 246.19619 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 3.0764 -1.2102 -0.1714 9 7 1.3431 -2.3778 0.2192 10 6 0.1604 -2.4167 1.0901 11 6 0.3712 -3.4923 2.1603 12 6 0.6958 -4.8249 1.4814 13 6 1.9887 -4.6865 0.6744 14 1 2.8008 -4.3869 1.3368 15 6 2.3300 -6.0281 0.0228 16 7 3.6267 -5.9277 -0.6516 17 6 4.1343 -6.9955 -1.2987 18 8 3.4816 -8.0132 -1.3943 19 6 5.5103 -6.9227 -1.9088 20 1 5.7004 -5.9067 -2.2546 21 6 5.5938 -7.8881 -3.0938 22 6 7.0655 -8.0167 -3.5074 23 8 7.7832 -8.6262 -2.4334 24 6 7.6097 -8.1190 -1.1852 25 6 8.5409 -8.4405 -0.2025 26 6 8.3971 -7.9479 1.0782 27 6 7.3242 -7.1322 1.3879 28 6 6.3986 -6.8103 0.4148 29 6 6.5390 -7.3000 -0.8731 30 6 1.7971 -3.6243 -0.4126 31 1 -0.4850 0.8401 -0.0004 32 1 -0.7219 -2.6586 0.4976 33 1 0.0244 -1.4467 1.5686 34 1 -0.5370 -3.5980 2.7537 35 1 1.1983 -3.2033 2.8087 36 1 -0.1208 -5.1011 0.8144 37 1 0.8221 -5.5974 2.2400 38 1 1.5606 -6.2845 -0.7055 39 1 2.3778 -6.8023 0.7886 40 1 4.1200 -5.0927 -0.6323 41 1 5.2080 -8.8644 -2.8003 42 1 5.0106 -7.4975 -3.9277 43 1 7.1432 -8.6374 -4.3999 44 1 7.4775 -7.0282 -3.7106 45 1 9.3789 -9.0780 -0.4430 46 1 9.1220 -8.1991 1.8383 47 1 7.2099 -6.7474 2.3905 48 1 5.5617 -6.1727 0.6591 49 1 2.7433 -3.4511 -0.9253 50 1 1.0485 -3.9645 -1.1281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266057610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:41 Heat of formation + Delta-G solvation = -59.464110 kcal Electronic energy + Delta-G solvation = -30539.603705 eV Core-core repulsion = 26530.915757 eV Total energy + Delta-G solvation = -4008.687948 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.11592 -40.53232 -39.32640 -38.45898 -36.31223 -35.31866 -34.64569 -32.29051 -32.02579 -31.50476 -31.18849 -28.03742 -27.22852 -26.24939 -24.70860 -23.85651 -23.61058 -22.54584 -21.87625 -20.94125 -20.47086 -19.02211 -18.65396 -18.00173 -17.73892 -17.19947 -16.95674 -16.79274 -16.30826 -15.92602 -15.76617 -15.46407 -15.11883 -15.00377 -14.97391 -14.74174 -14.51891 -14.27957 -14.22777 -13.97858 -13.75002 -13.54217 -13.39007 -13.01981 -12.90781 -12.83999 -12.54812 -12.46999 -12.28053 -12.06227 -11.98081 -11.85374 -11.82691 -11.64040 -11.57183 -11.35796 -11.11178 -10.89057 -10.54430 -10.11386 -9.80692 -9.15739 -8.61289 -7.85636 -5.37432 0.27144 0.43173 1.47442 1.48615 1.51591 1.57680 2.09580 2.35958 2.50843 2.78137 3.30600 3.41852 3.54841 3.59189 3.68418 3.83318 3.98741 4.00207 4.06316 4.10605 4.13586 4.20655 4.36035 4.40973 4.50439 4.51449 4.53627 4.57179 4.61261 4.65775 4.76636 4.87123 4.89381 4.91551 5.00593 5.01622 5.07647 5.10789 5.22892 5.29690 5.33371 5.37499 5.43196 5.46771 5.56787 5.58217 5.67270 5.80395 5.82642 6.41505 6.43737 6.46300 7.13539 7.16846 7.86439 8.39898 9.20054 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012943 B = 0.002639 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2162.851895 B =10607.085147 C =11047.377129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.051 4.051 3 Si 0.968 3.032 4 H -0.285 1.285 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.262 4.262 8 H 0.070 0.930 9 N -0.609 5.609 10 C 0.174 3.826 11 C -0.130 4.130 12 C -0.097 4.097 13 C -0.099 4.099 14 H 0.078 0.922 15 C 0.137 3.863 16 N -0.715 5.715 17 C 0.526 3.474 18 O -0.576 6.576 19 C -0.062 4.062 20 H 0.124 0.876 21 C -0.144 4.144 22 C 0.062 3.938 23 O -0.329 6.329 24 C 0.124 3.876 25 C -0.161 4.161 26 C -0.082 4.082 27 C -0.157 4.157 28 C -0.098 4.098 29 C -0.166 4.166 30 C 0.153 3.847 31 H 0.249 0.751 32 H -0.009 1.009 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.071 0.929 40 H 0.411 0.589 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.136 0.864 44 H 0.082 0.918 45 H 0.145 0.855 46 H 0.157 0.843 47 H 0.143 0.857 48 H 0.128 0.872 49 H 0.057 0.943 50 H 0.004 0.996 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.434 -16.270 -0.628 23.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.246 4.246 3 Si 0.796 3.204 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.392 4.392 8 H 0.088 0.912 9 N -0.332 5.332 10 C 0.048 3.952 11 C -0.169 4.169 12 C -0.135 4.135 13 C -0.119 4.119 14 H 0.097 0.903 15 C 0.013 3.987 16 N -0.367 5.367 17 C 0.313 3.687 18 O -0.456 6.456 19 C -0.083 4.083 20 H 0.142 0.858 21 C -0.182 4.182 22 C -0.012 4.012 23 O -0.243 6.243 24 C 0.079 3.921 25 C -0.179 4.179 26 C -0.099 4.099 27 C -0.175 4.175 28 C -0.116 4.116 29 C -0.167 4.167 30 C 0.028 3.972 31 H 0.058 0.942 32 H 0.009 0.991 33 H 0.070 0.930 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.097 0.903 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.248 0.752 41 H 0.087 0.913 42 H 0.122 0.878 43 H 0.154 0.846 44 H 0.100 0.900 45 H 0.163 0.837 46 H 0.175 0.825 47 H 0.160 0.840 48 H 0.146 0.854 49 H 0.076 0.924 50 H 0.022 0.978 Dipole moment (debyes) X Y Z Total from point charges 15.972 -16.994 -0.754 23.333 hybrid contribution -0.359 1.765 -0.195 1.812 sum 15.613 -15.229 -0.949 21.831 Atomic orbital electron populations 1.70161 1.06793 1.25728 1.55698 1.25938 0.96111 1.01628 1.00908 0.85274 0.78144 0.79494 0.77524 1.21205 1.22229 1.19114 1.19523 0.91308 0.85013 1.43356 0.91226 1.44249 1.32163 1.04203 1.52614 1.20614 0.87257 0.97063 0.90226 1.22004 1.00899 0.95885 0.98115 1.21333 0.96248 0.97096 0.98855 1.21711 0.98932 0.93408 0.97889 0.90331 1.21282 0.84324 0.97073 0.96017 1.46141 1.21966 1.14575 1.54008 1.20600 0.87844 0.82728 0.77495 1.90670 1.62174 1.32331 1.60415 1.20216 0.89610 1.03353 0.95127 0.85813 1.22136 0.98571 1.00017 0.97469 1.23237 0.89163 1.00523 0.88285 1.85963 1.66992 1.57152 1.14202 1.18887 0.93681 0.93865 0.85692 1.20903 0.99731 1.04613 0.92663 1.21323 0.97701 0.95167 0.95755 1.21338 0.95454 1.00451 1.00221 1.21247 0.99517 0.98790 0.92069 1.19456 0.96831 1.04304 0.96098 1.21020 0.97146 0.86179 0.92880 0.94217 0.99131 0.93024 0.91412 0.92766 0.92824 0.90255 0.92558 0.91107 0.75169 0.91297 0.87842 0.84648 0.89970 0.83728 0.82510 0.83952 0.85446 0.92417 0.97805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -54.99 11.07 21.65 0.24 -54.75 16 2 C -0.05 -2.77 5.05 84.86 0.43 -2.34 16 3 Si 0.97 43.72 29.57 68.60 2.03 45.75 16 4 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 5 H -0.30 -13.55 7.11 99.48 0.71 -12.84 16 6 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 7 C -0.26 -13.85 9.58 84.03 0.80 -13.04 16 8 H 0.07 3.51 7.85 -2.91 -0.02 3.49 16 9 N -0.61 -29.44 2.98 -699.06 -2.09 -31.52 16 10 C 0.17 8.27 5.25 86.36 0.45 8.72 16 11 C -0.13 -4.64 6.08 30.67 0.19 -4.46 16 12 C -0.10 -2.92 5.17 30.62 0.16 -2.76 16 13 C -0.10 -2.95 2.37 -10.72 -0.03 -2.98 16 14 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 15 C 0.14 3.64 5.07 86.38 0.44 4.08 16 16 N -0.72 -17.20 4.18 -463.05 -1.94 -19.13 16 17 C 0.53 13.82 6.11 87.66 0.54 14.36 16 18 O -0.58 -19.61 15.89 -3.04 -0.05 -19.66 16 19 C -0.06 -1.28 2.70 -12.24 -0.03 -1.32 16 20 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 21 C -0.14 -2.68 5.26 30.76 0.16 -2.52 16 22 C 0.06 0.91 7.03 72.12 0.51 1.41 16 23 O -0.33 -6.79 10.27 -91.85 -0.94 -7.73 16 24 C 0.12 2.71 6.47 22.52 0.15 2.86 16 25 C -0.16 -2.99 9.94 22.42 0.22 -2.76 16 26 C -0.08 -1.31 10.04 22.22 0.22 -1.09 16 27 C -0.16 -2.83 10.04 22.25 0.22 -2.61 16 28 C -0.10 -2.07 9.10 22.30 0.20 -1.87 16 29 C -0.17 -3.66 5.43 -19.75 -0.11 -3.76 16 30 C 0.15 5.90 5.60 86.36 0.48 6.39 16 31 H 0.25 14.18 8.31 -92.70 -0.77 13.41 16 32 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.05 2.80 6.13 -2.38 -0.01 2.79 16 34 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.66 8.14 -2.39 -0.02 1.65 16 37 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 38 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.41 8.65 7.45 -92.70 -0.69 7.96 16 41 H 0.07 1.65 7.44 -2.39 -0.02 1.64 16 42 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.14 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.14 2.16 8.06 -2.91 -0.02 2.13 16 46 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 47 H 0.14 2.01 8.06 -2.91 -0.02 1.98 16 48 H 0.13 2.60 6.22 -2.91 -0.02 2.58 16 49 H 0.06 2.08 7.14 -2.38 -0.02 2.07 16 50 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 Total: -1.00 -70.45 392.14 2.51 -67.94 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: 0.25 Total: 22.79 kcal Atomic # 6 Polarization: -8.70 SS G_CDS: 5.01 Total: -3.69 kcal Atomic # 7 Polarization: -101.62 SS G_CDS: -3.78 Total: -105.40 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.99 Total: -27.39 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.75 kcal Total: -70.45 2.51 -67.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266057610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.477 kcal (2) G-P(sol) polarization free energy of solvation -70.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds