Wall clock time and date at job start Wed Apr 1 2020 02:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99873 * 2 1 4 4 H 1.48502 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47375 * 300.00435 * 3 2 1 6 6 H 1.48503 * 109.46899 * 60.00463 * 3 2 1 7 7 C 1.38815 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99732 * 169.06469 * 7 2 1 9 9 N 1.36941 * 119.99677 * 349.06813 * 7 2 1 10 10 C 1.46924 * 120.62907 * 148.86082 * 9 7 2 11 11 C 1.53193 * 108.77564 * 126.36642 * 10 9 7 12 12 C 1.53034 * 109.31417 * 54.63180 * 11 10 9 13 13 C 1.53046 * 109.54054 * 298.63778 * 12 11 10 14 14 H 1.09002 * 109.52044 * 301.39560 * 13 12 11 15 15 C 1.52995 * 109.49810 * 181.31647 * 13 12 11 16 16 N 1.46502 * 109.47150 * 175.15853 * 15 13 12 17 17 C 1.34779 * 120.00052 * 179.97438 * 16 15 13 18 18 O 1.21276 * 119.99962 * 4.72998 * 17 16 15 19 19 C 1.50694 * 119.99908 * 184.72836 * 17 16 15 20 20 H 1.09002 * 109.44061 * 24.51117 * 19 17 16 21 21 C 1.53074 * 109.43991 * 144.42750 * 19 17 16 22 22 C 1.53409 * 108.28927 * 168.27065 * 21 19 17 23 23 O 1.42817 * 108.38009 * 295.26064 * 22 21 19 24 24 C 1.35853 * 117.86868 * 49.11930 * 23 22 21 25 25 C 1.39146 * 118.49636 * 163.00616 * 24 23 22 26 26 C 1.37961 * 120.21617 * 179.80150 * 25 24 23 27 27 C 1.38294 * 119.95883 * 359.97438 * 26 25 24 28 28 C 1.38111 * 119.98039 * 0.08437 * 27 26 25 29 29 C 1.38365 * 121.80402 * 342.94947 * 24 23 22 30 30 C 1.46921 * 120.62943 * 328.83106 * 9 7 2 31 31 H 0.97000 * 119.99808 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.58414 * 246.15037 * 10 9 7 33 33 H 1.09004 * 109.58498 * 6.43510 * 10 9 7 34 34 H 1.08996 * 109.49567 * 174.59030 * 11 10 9 35 35 H 1.09005 * 109.49625 * 294.64605 * 11 10 9 36 36 H 1.09002 * 109.46351 * 178.61573 * 12 11 10 37 37 H 1.09000 * 109.45990 * 58.65798 * 12 11 10 38 38 H 1.09000 * 109.47530 * 55.16086 * 15 13 12 39 39 H 1.09003 * 109.47328 * 295.15914 * 15 13 12 40 40 H 0.97001 * 119.99533 * 0.02562 * 16 15 13 41 41 H 1.09004 * 109.69337 * 48.57326 * 21 19 17 42 42 H 1.08998 * 109.73443 * 287.99578 * 21 19 17 43 43 H 1.09002 * 109.67876 * 175.53555 * 22 21 19 44 44 H 1.09003 * 109.71178 * 55.00569 * 22 21 19 45 45 H 1.08001 * 119.88929 * 359.77359 * 25 24 23 46 46 H 1.07995 * 120.02492 * 179.97438 * 26 25 24 47 47 H 1.07992 * 120.01211 * 180.10194 * 27 26 25 48 48 H 1.07999 * 119.83736 * 179.97438 * 28 27 26 49 49 H 1.09002 * 109.58527 * 113.84941 * 30 9 7 50 50 H 1.09003 * 109.70863 * 353.49106 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0756 -1.2105 -0.1780 9 7 1.3442 -2.3774 0.2238 10 6 1.8013 -3.6275 -0.3983 11 6 1.9926 -4.6819 0.6965 12 6 0.6978 -4.8170 1.5009 13 6 0.3689 -3.4803 2.1698 14 1 1.1935 -3.1852 2.8188 15 6 -0.9078 -3.6253 3.0003 16 7 -1.1587 -2.3809 3.7316 17 6 -2.2368 -2.2762 4.5336 18 8 -2.9517 -3.2384 4.7172 19 6 -2.5540 -0.9634 5.2020 20 1 -2.1183 -0.1478 4.6248 21 6 -4.0722 -0.7820 5.2742 22 6 -4.3723 0.3979 6.2075 23 8 -3.9399 0.0520 7.5240 24 6 -2.6872 -0.4533 7.6687 25 6 -2.1165 -0.4600 8.9377 26 6 -0.8479 -0.9685 9.1258 27 6 -0.1401 -1.4740 8.0507 28 6 -0.7029 -1.4679 6.7895 29 6 -1.9753 -0.9566 6.5942 30 6 0.1593 -2.4123 1.0918 31 1 -0.4850 0.8401 0.0004 32 1 1.0550 -3.9741 -1.1130 33 1 2.7471 -3.4554 -0.9121 34 1 2.2387 -5.6403 0.2394 35 1 2.8027 -4.3760 1.3586 36 1 0.8232 -5.5842 2.2649 37 1 -0.1166 -5.0991 0.8336 38 1 -0.7895 -4.4453 3.7085 39 1 -1.7492 -3.8343 2.3396 40 1 -0.5492 -1.6321 3.6380 41 1 -4.5321 -1.6884 5.6681 42 1 -4.4656 -0.5730 4.2794 43 1 -5.4438 0.5977 6.2136 44 1 -3.8358 1.2829 5.8655 45 1 -2.6683 -0.0654 9.7781 46 1 -0.4078 -0.9717 10.1120 47 1 0.8524 -1.8738 8.1973 48 1 -0.1479 -1.8629 5.9515 49 1 -0.7210 -2.6599 0.4985 50 1 0.0203 -1.4395 1.5634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266057628.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:49 Heat of formation + Delta-G solvation = -42.992073 kcal Electronic energy + Delta-G solvation = -30944.561504 eV Core-core repulsion = 26936.587837 eV Total energy + Delta-G solvation = -4007.973667 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.13007 -39.29771 -37.77771 -37.60712 -34.72317 -34.27213 -33.09065 -31.04075 -30.65865 -30.32864 -29.84780 -26.94167 -25.39094 -25.01749 -23.81210 -22.72701 -22.17969 -21.04654 -20.60851 -19.79976 -19.03899 -18.05616 -17.03980 -16.81651 -16.72131 -16.18878 -15.71558 -15.20888 -15.05773 -14.70893 -14.30457 -14.12267 -13.91027 -13.83122 -13.68104 -13.51632 -13.35315 -13.10683 -12.91140 -12.62055 -12.34078 -12.21865 -12.14268 -12.02129 -11.62920 -11.28521 -11.14381 -11.02771 -10.99340 -10.81051 -10.74549 -10.54412 -10.24825 -10.22897 -9.97729 -9.83360 -9.57042 -9.48019 -8.90175 -8.77544 -8.56441 -8.26994 -6.68339 -5.86161 -3.33746 1.15869 1.31673 2.74921 3.11828 3.29299 3.35296 3.38450 3.39974 3.69729 4.39158 4.41239 4.50292 4.57779 4.77609 4.95845 5.01069 5.03066 5.13061 5.18544 5.28369 5.29792 5.34509 5.41665 5.45756 5.51373 5.54961 5.56521 5.73807 5.76516 5.85565 5.94744 5.99215 6.07723 6.15364 6.25119 6.26730 6.30616 6.37619 6.41714 6.46516 6.61867 6.64379 6.69084 6.78405 6.82257 6.97636 7.26790 7.29733 7.57484 7.71831 7.72776 8.38705 8.39611 9.15027 9.76356 10.35195 11.21370 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010654 B = 0.003301 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.374741 B = 8480.657439 C = 9387.356377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.004 3.996 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.143 3.857 11 C -0.133 4.133 12 C -0.100 4.100 13 C -0.128 4.128 14 H 0.069 0.931 15 C 0.130 3.870 16 N -0.717 5.717 17 C 0.526 3.474 18 O -0.542 6.542 19 C -0.066 4.066 20 H 0.105 0.895 21 C -0.146 4.146 22 C 0.063 3.937 23 O -0.316 6.316 24 C 0.140 3.860 25 C -0.152 4.152 26 C -0.086 4.086 27 C -0.150 4.150 28 C -0.081 4.081 29 C -0.146 4.146 30 C 0.180 3.820 31 H 0.253 0.747 32 H 0.017 0.983 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.059 0.941 39 H 0.064 0.936 40 H 0.406 0.594 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.112 0.888 44 H 0.067 0.933 45 H 0.130 0.870 46 H 0.128 0.872 47 H 0.125 0.875 48 H 0.126 0.874 49 H 0.018 0.982 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 -1.813 14.192 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.194 4.194 3 Si 0.731 3.269 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.017 3.983 11 C -0.172 4.172 12 C -0.138 4.138 13 C -0.149 4.149 14 H 0.087 0.913 15 C 0.006 3.994 16 N -0.369 5.369 17 C 0.311 3.689 18 O -0.420 6.420 19 C -0.088 4.088 20 H 0.123 0.877 21 C -0.184 4.184 22 C -0.012 4.012 23 O -0.230 6.230 24 C 0.095 3.905 25 C -0.170 4.170 26 C -0.104 4.104 27 C -0.168 4.168 28 C -0.099 4.099 29 C -0.147 4.147 30 C 0.054 3.946 31 H 0.063 0.937 32 H 0.035 0.965 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.241 0.759 41 H 0.112 0.888 42 H 0.109 0.891 43 H 0.130 0.870 44 H 0.086 0.914 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.143 0.857 48 H 0.144 0.856 49 H 0.036 0.964 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.956 -2.319 14.395 15.400 hybrid contribution 0.830 1.212 -0.465 1.541 sum -4.126 -1.107 13.931 14.571 Atomic orbital electron populations 1.69995 1.05155 1.25283 1.54477 1.25142 0.95398 0.98282 1.00598 0.86235 0.79400 0.83910 0.77336 1.20235 1.21628 1.21567 1.19245 0.90988 0.83929 1.43893 0.91771 1.44005 1.32048 1.03488 1.51975 1.20943 0.97599 0.87098 0.92701 1.21985 0.97111 0.98886 0.99210 1.21330 0.98112 0.95877 0.98496 1.22162 0.95368 0.98687 0.98677 0.91283 1.21411 0.98448 0.85359 0.94156 1.46161 1.26762 1.17999 1.45928 1.20098 0.80728 0.89393 0.78644 1.90665 1.49833 1.39123 1.62342 1.20189 0.97550 0.97401 0.93624 0.87689 1.22153 0.93889 1.00470 1.01870 1.23011 1.01116 0.96606 0.80422 1.85971 1.27987 1.78054 1.31013 1.18629 0.84135 0.94235 0.93473 1.20561 0.96085 1.05175 0.95207 1.20936 0.93576 0.96874 0.99040 1.21017 1.00661 1.02570 0.92554 1.21051 0.93745 0.97103 0.97972 1.19381 0.96298 1.05320 0.93696 1.20803 0.88356 0.96398 0.89019 0.93694 0.96508 0.92910 0.93086 0.92463 0.93445 0.92499 0.92307 0.91749 0.75866 0.88816 0.89089 0.87031 0.91434 0.85205 0.85398 0.85689 0.85599 0.96406 0.89359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.72 11.05 55.49 0.61 -24.11 16 2 C 0.00 0.11 5.05 -17.43 -0.09 0.02 16 3 Si 0.90 20.74 29.57 -169.99 -5.03 15.71 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.25 -6.58 9.58 -15.06 -0.14 -6.72 16 8 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 9 N -0.59 -14.15 2.99 -172.32 -0.51 -14.66 16 10 C 0.14 2.90 6.52 -3.71 -0.02 2.88 16 11 C -0.13 -2.21 6.08 -26.61 -0.16 -2.37 16 12 C -0.10 -1.60 5.17 -26.69 -0.14 -1.74 16 13 C -0.13 -2.23 2.38 -90.50 -0.21 -2.44 16 14 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 15 C 0.13 2.10 5.07 -4.04 -0.02 2.08 16 16 N -0.72 -11.08 4.61 -60.30 -0.28 -11.36 16 17 C 0.53 8.34 5.80 -10.99 -0.06 8.28 16 18 O -0.54 -10.28 16.07 5.56 0.09 -10.19 16 19 C -0.07 -0.88 2.70 -92.85 -0.25 -1.13 16 20 H 0.11 1.29 8.13 -51.93 -0.42 0.87 16 21 C -0.15 -1.73 5.35 -26.48 -0.14 -1.87 16 22 C 0.06 0.63 7.03 37.37 0.26 0.90 16 23 O -0.32 -3.94 10.27 -19.28 -0.20 -4.14 16 24 C 0.14 1.84 6.47 -39.20 -0.25 1.59 16 25 C -0.15 -1.73 9.94 -39.35 -0.39 -2.12 16 26 C -0.09 -0.89 10.04 -39.66 -0.40 -1.29 16 27 C -0.15 -1.69 10.05 -39.61 -0.40 -2.09 16 28 C -0.08 -1.05 9.10 -39.53 -0.36 -1.41 16 29 C -0.15 -1.97 5.43 -104.44 -0.57 -2.53 16 30 C 0.18 3.96 4.34 -3.71 -0.02 3.94 16 31 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 34 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 40 H 0.41 6.09 7.65 -40.82 -0.31 5.78 16 41 H 0.09 1.28 7.46 -51.93 -0.39 0.89 16 42 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.13 1.24 8.06 -52.49 -0.42 0.81 16 46 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 47 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 48 H 0.13 1.61 6.76 -52.49 -0.35 1.26 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 50 H 0.09 2.10 5.30 -51.93 -0.27 1.83 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -30.90 393.20 -10.81 -41.71 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -8.05 Total: 7.15 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -3.37 Total: -6.04 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.18 Total: -50.12 kcal Atomic # 8 Polarization: -14.22 SS G_CDS: -0.11 Total: -14.33 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.90 -10.81 -41.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266057628.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.282 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds