Wall clock time and date at job start Wed Apr 1 2020 02:41:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86798 * 119.99873 * 2 1 4 4 H 1.48502 * 109.46858 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47375 * 300.00435 * 3 2 1 6 6 H 1.48503 * 109.46899 * 60.00463 * 3 2 1 7 7 C 1.38815 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99732 * 169.06469 * 7 2 1 9 9 N 1.36941 * 119.99677 * 349.06813 * 7 2 1 10 10 C 1.46924 * 120.62907 * 148.86082 * 9 7 2 11 11 C 1.53193 * 108.77564 * 126.36642 * 10 9 7 12 12 C 1.53034 * 109.31417 * 54.63180 * 11 10 9 13 13 C 1.53046 * 109.54054 * 298.63778 * 12 11 10 14 14 H 1.09002 * 109.52044 * 301.39560 * 13 12 11 15 15 C 1.52995 * 109.49810 * 181.31647 * 13 12 11 16 16 N 1.46502 * 109.47150 * 175.15853 * 15 13 12 17 17 C 1.34779 * 120.00052 * 179.97438 * 16 15 13 18 18 O 1.21276 * 119.99962 * 4.72998 * 17 16 15 19 19 C 1.50694 * 119.99908 * 184.72836 * 17 16 15 20 20 H 1.09002 * 109.44061 * 24.51117 * 19 17 16 21 21 C 1.53074 * 109.43991 * 144.42750 * 19 17 16 22 22 C 1.53409 * 108.28927 * 168.27065 * 21 19 17 23 23 O 1.42817 * 108.38009 * 295.26064 * 22 21 19 24 24 C 1.35853 * 117.86868 * 49.11930 * 23 22 21 25 25 C 1.39146 * 118.49636 * 163.00616 * 24 23 22 26 26 C 1.37961 * 120.21617 * 179.80150 * 25 24 23 27 27 C 1.38294 * 119.95883 * 359.97438 * 26 25 24 28 28 C 1.38111 * 119.98039 * 0.08437 * 27 26 25 29 29 C 1.38365 * 121.80402 * 342.94947 * 24 23 22 30 30 C 1.46921 * 120.62943 * 328.83106 * 9 7 2 31 31 H 0.97000 * 119.99808 * 359.97438 * 1 2 3 32 32 H 1.08999 * 109.58414 * 246.15037 * 10 9 7 33 33 H 1.09004 * 109.58498 * 6.43510 * 10 9 7 34 34 H 1.08996 * 109.49567 * 174.59030 * 11 10 9 35 35 H 1.09005 * 109.49625 * 294.64605 * 11 10 9 36 36 H 1.09002 * 109.46351 * 178.61573 * 12 11 10 37 37 H 1.09000 * 109.45990 * 58.65798 * 12 11 10 38 38 H 1.09000 * 109.47530 * 55.16086 * 15 13 12 39 39 H 1.09003 * 109.47328 * 295.15914 * 15 13 12 40 40 H 0.97001 * 119.99533 * 0.02562 * 16 15 13 41 41 H 1.09004 * 109.69337 * 48.57326 * 21 19 17 42 42 H 1.08998 * 109.73443 * 287.99578 * 21 19 17 43 43 H 1.09002 * 109.67876 * 175.53555 * 22 21 19 44 44 H 1.09003 * 109.71178 * 55.00569 * 22 21 19 45 45 H 1.08001 * 119.88929 * 359.77359 * 25 24 23 46 46 H 1.07995 * 120.02492 * 179.97438 * 26 25 24 47 47 H 1.07992 * 120.01211 * 180.10194 * 27 26 25 48 48 H 1.07999 * 119.83736 * 179.97438 * 28 27 26 49 49 H 1.09002 * 109.58527 * 113.84941 * 30 9 7 50 50 H 1.09003 * 109.70863 * 353.49106 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0756 -1.2105 -0.1780 9 7 1.3442 -2.3774 0.2238 10 6 1.8013 -3.6275 -0.3983 11 6 1.9926 -4.6819 0.6965 12 6 0.6978 -4.8170 1.5009 13 6 0.3689 -3.4803 2.1698 14 1 1.1935 -3.1852 2.8188 15 6 -0.9078 -3.6253 3.0003 16 7 -1.1587 -2.3809 3.7316 17 6 -2.2368 -2.2762 4.5336 18 8 -2.9517 -3.2384 4.7172 19 6 -2.5540 -0.9634 5.2020 20 1 -2.1183 -0.1478 4.6248 21 6 -4.0722 -0.7820 5.2742 22 6 -4.3723 0.3979 6.2075 23 8 -3.9399 0.0520 7.5240 24 6 -2.6872 -0.4533 7.6687 25 6 -2.1165 -0.4600 8.9377 26 6 -0.8479 -0.9685 9.1258 27 6 -0.1401 -1.4740 8.0507 28 6 -0.7029 -1.4679 6.7895 29 6 -1.9753 -0.9566 6.5942 30 6 0.1593 -2.4123 1.0918 31 1 -0.4850 0.8401 0.0004 32 1 1.0550 -3.9741 -1.1130 33 1 2.7471 -3.4554 -0.9121 34 1 2.2387 -5.6403 0.2394 35 1 2.8027 -4.3760 1.3586 36 1 0.8232 -5.5842 2.2649 37 1 -0.1166 -5.0991 0.8336 38 1 -0.7895 -4.4453 3.7085 39 1 -1.7492 -3.8343 2.3396 40 1 -0.5492 -1.6321 3.6380 41 1 -4.5321 -1.6884 5.6681 42 1 -4.4656 -0.5730 4.2794 43 1 -5.4438 0.5977 6.2136 44 1 -3.8358 1.2829 5.8655 45 1 -2.6683 -0.0654 9.7781 46 1 -0.4078 -0.9717 10.1120 47 1 0.8524 -1.8738 8.1973 48 1 -0.1479 -1.8629 5.9515 49 1 -0.7210 -2.6599 0.4985 50 1 0.0203 -1.4395 1.5634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266057628.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:41:48 Heat of formation + Delta-G solvation = -60.100396 kcal Electronic energy + Delta-G solvation = -30945.303377 eV Core-core repulsion = 26936.587837 eV Total energy + Delta-G solvation = -4008.715539 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.12413 -40.53095 -39.31566 -38.47494 -36.20217 -35.32798 -34.79641 -32.54786 -31.69909 -31.45909 -31.22035 -28.10151 -27.23315 -26.28226 -24.74795 -23.90166 -23.62358 -22.44902 -21.85251 -20.94528 -20.48152 -19.03080 -18.69643 -18.07539 -17.75857 -17.16975 -16.99038 -16.87620 -16.11070 -15.94463 -15.74578 -15.42398 -15.16183 -15.06627 -14.97187 -14.72514 -14.53313 -14.31261 -14.24641 -14.00753 -13.76275 -13.62979 -13.39778 -12.94928 -12.92269 -12.85853 -12.58926 -12.50719 -12.23530 -12.09091 -11.96799 -11.88112 -11.80691 -11.67257 -11.55810 -11.33838 -11.10706 -10.89142 -10.56540 -10.11246 -9.82515 -9.17833 -8.60712 -7.85340 -5.36295 0.25708 0.41188 1.45643 1.49051 1.49275 1.58121 2.10646 2.33877 2.50760 2.76540 3.28548 3.39575 3.54157 3.59543 3.66126 3.80240 3.99032 4.05768 4.07545 4.09930 4.14808 4.18641 4.32069 4.34866 4.47717 4.48701 4.51230 4.53523 4.61981 4.63665 4.80075 4.85536 4.87648 4.89233 4.97245 5.03012 5.03711 5.15114 5.22734 5.27893 5.34788 5.38311 5.41666 5.46827 5.54087 5.56844 5.67430 5.79780 5.80862 6.40585 6.42719 6.44194 7.10846 7.17797 7.86767 8.40223 9.19582 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010654 B = 0.003301 C = 0.002982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.374741 B = 8480.657439 C = 9387.356377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.041 4.041 3 Si 0.962 3.038 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.286 1.286 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.612 5.612 10 C 0.135 3.865 11 C -0.121 4.121 12 C -0.099 4.099 13 C -0.111 4.111 14 H 0.070 0.930 15 C 0.138 3.862 16 N -0.715 5.715 17 C 0.528 3.472 18 O -0.576 6.576 19 C -0.064 4.064 20 H 0.111 0.889 21 C -0.144 4.144 22 C 0.064 3.936 23 O -0.326 6.326 24 C 0.123 3.877 25 C -0.158 4.158 26 C -0.080 4.080 27 C -0.154 4.154 28 C -0.100 4.100 29 C -0.164 4.164 30 C 0.191 3.809 31 H 0.250 0.750 32 H 0.009 0.991 33 H 0.051 0.949 34 H 0.082 0.918 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.051 0.949 40 H 0.408 0.592 41 H 0.073 0.927 42 H 0.099 0.901 43 H 0.140 0.860 44 H 0.078 0.922 45 H 0.148 0.852 46 H 0.162 0.838 47 H 0.145 0.855 48 H 0.120 0.880 49 H -0.014 1.014 50 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.221 -1.945 15.958 16.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.237 4.237 3 Si 0.791 3.209 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.213 1.213 7 C -0.393 4.393 8 H 0.080 0.920 9 N -0.335 5.335 10 C 0.010 3.990 11 C -0.160 4.160 12 C -0.137 4.137 13 C -0.132 4.132 14 H 0.089 0.911 15 C 0.014 3.986 16 N -0.365 5.365 17 C 0.315 3.685 18 O -0.456 6.456 19 C -0.086 4.086 20 H 0.129 0.871 21 C -0.182 4.182 22 C -0.010 4.010 23 O -0.240 6.240 24 C 0.078 3.922 25 C -0.176 4.176 26 C -0.098 4.098 27 C -0.172 4.172 28 C -0.118 4.118 29 C -0.165 4.165 30 C 0.065 3.935 31 H 0.059 0.941 32 H 0.027 0.973 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.244 0.756 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.157 0.843 44 H 0.096 0.904 45 H 0.166 0.834 46 H 0.179 0.821 47 H 0.163 0.837 48 H 0.138 0.862 49 H 0.004 0.996 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.949 -2.466 16.158 16.815 hybrid contribution 0.544 1.219 -1.059 1.704 sum -3.405 -1.246 15.100 15.529 Atomic orbital electron populations 1.70145 1.06367 1.25631 1.55572 1.25790 0.96085 1.01018 1.00805 0.85290 0.78607 0.80209 0.76844 1.19400 1.22262 1.21254 1.19514 0.91201 0.85158 1.43440 0.91975 1.44291 1.32221 1.04092 1.52897 1.21119 0.97058 0.86872 0.93937 1.21864 0.97325 0.98857 0.97962 1.21357 0.97717 0.95515 0.99117 1.21916 0.95883 0.98150 0.97214 0.91143 1.21288 0.97238 0.86058 0.94024 1.46170 1.26824 1.17876 1.45633 1.20532 0.79995 0.89953 0.78066 1.90638 1.50875 1.40514 1.63580 1.20206 0.98689 0.95825 0.93835 0.87100 1.22143 0.92685 1.00530 1.02823 1.23210 1.02900 0.95815 0.79116 1.85952 1.27831 1.78093 1.32120 1.18908 0.84456 0.94818 0.94067 1.20920 0.96691 1.04886 0.95112 1.21337 0.92984 0.95222 1.00234 1.21332 1.01594 1.02208 0.92109 1.21173 0.93877 0.97954 0.98818 1.19449 0.96835 1.06552 0.93703 1.20571 0.86750 0.96781 0.89361 0.94075 0.97289 0.93049 0.89959 0.92451 0.90328 0.92776 0.91058 0.93088 0.75626 0.90877 0.88234 0.84277 0.90370 0.83385 0.82082 0.83716 0.86199 0.99618 0.91629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -52.16 11.05 21.65 0.24 -51.92 16 2 C -0.04 -2.19 5.05 84.86 0.43 -1.77 16 3 Si 0.96 42.94 29.57 68.60 2.03 44.97 16 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 5 H -0.30 -13.40 7.11 99.48 0.71 -12.70 16 6 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.26 -13.92 9.58 84.03 0.81 -13.12 16 8 H 0.06 3.25 7.85 -2.91 -0.02 3.23 16 9 N -0.61 -29.55 2.99 -699.10 -2.09 -31.64 16 10 C 0.14 5.46 6.52 86.36 0.56 6.02 16 11 C -0.12 -3.77 6.08 30.67 0.19 -3.59 16 12 C -0.10 -2.98 5.17 30.62 0.16 -2.82 16 13 C -0.11 -3.82 2.38 -10.72 -0.03 -3.84 16 14 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 15 C 0.14 4.45 5.07 86.38 0.44 4.89 16 16 N -0.71 -22.56 4.61 -463.07 -2.14 -24.69 16 17 C 0.53 17.15 5.80 87.65 0.51 17.66 16 18 O -0.58 -22.40 16.07 -3.02 -0.05 -22.45 16 19 C -0.06 -1.75 2.70 -12.24 -0.03 -1.78 16 20 H 0.11 2.79 8.13 -2.39 -0.02 2.77 16 21 C -0.14 -3.43 5.35 30.76 0.16 -3.27 16 22 C 0.06 1.22 7.03 72.12 0.51 1.72 16 23 O -0.33 -7.84 10.27 -91.89 -0.94 -8.78 16 24 C 0.12 3.13 6.47 22.52 0.15 3.27 16 25 C -0.16 -3.32 9.94 22.42 0.22 -3.10 16 26 C -0.08 -1.46 10.04 22.22 0.22 -1.24 16 27 C -0.15 -3.24 10.05 22.25 0.22 -3.01 16 28 C -0.10 -2.57 9.10 22.30 0.20 -2.36 16 29 C -0.16 -4.43 5.43 -19.75 -0.11 -4.53 16 30 C 0.19 8.60 4.34 86.36 0.37 8.98 16 31 H 0.25 13.56 8.31 -92.71 -0.77 12.79 16 32 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.05 2.04 7.93 -2.38 -0.02 2.02 16 34 H 0.08 2.08 8.14 -2.39 -0.02 2.07 16 35 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 36 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 40 H 0.41 12.63 7.65 -92.71 -0.71 11.92 16 41 H 0.07 2.05 7.46 -2.39 -0.02 2.04 16 42 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 43 H 0.14 1.82 8.14 -2.39 -0.02 1.81 16 44 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.15 2.48 8.06 -2.91 -0.02 2.46 16 46 H 0.16 1.81 8.06 -2.91 -0.02 1.78 16 47 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 48 H 0.12 3.10 6.76 -2.91 -0.02 3.08 16 49 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 50 H 0.07 3.24 5.30 -2.39 -0.01 3.22 16 Total: -1.00 -67.79 393.20 2.26 -65.53 By element: Atomic # 1 Polarization: 30.63 SS G_CDS: 0.23 Total: 30.86 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: 4.99 Total: -1.89 kcal Atomic # 7 Polarization: -104.26 SS G_CDS: -3.98 Total: -108.25 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.99 Total: -31.23 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -67.79 2.26 -65.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266057628.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.430 kcal (2) G-P(sol) polarization free energy of solvation -67.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds