Wall clock time and date at job start Wed Apr 1 2020 02:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48495 * 109.47351 * 240.00038 * 3 2 1 5 5 H 1.48497 * 109.47372 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46797 * 120.00647 * 3 2 1 7 7 C 1.38813 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99970 * 195.92498 * 7 2 1 9 9 N 1.36942 * 119.99684 * 15.92670 * 7 2 1 10 10 C 1.46918 * 120.63374 * 34.28314 * 9 7 2 11 11 C 1.53191 * 108.77401 * 126.41375 * 10 9 7 12 12 C 1.53037 * 109.31408 * 54.63575 * 11 10 9 13 13 C 1.53032 * 109.53960 * 298.63580 * 12 11 10 14 14 H 1.09004 * 109.49821 * 301.37966 * 13 12 11 15 15 C 1.53005 * 109.50125 * 181.31505 * 13 12 11 16 16 N 1.46498 * 109.47111 * 175.00048 * 15 13 12 17 17 C 1.34778 * 119.99976 * 180.02562 * 16 15 13 18 18 O 1.21280 * 119.99796 * 4.12736 * 17 16 15 19 19 C 1.50701 * 119.99998 * 184.13136 * 17 16 15 20 20 H 1.08997 * 109.33672 * 233.53263 * 19 17 16 21 21 O 1.42717 * 109.33850 * 353.21444 * 19 17 16 22 22 C 1.43211 * 113.14327 * 171.87023 * 21 19 17 23 23 C 1.52965 * 108.48728 * 289.35041 * 22 21 19 24 24 C 1.50742 * 109.76129 * 49.22016 * 23 22 21 25 25 C 1.38594 * 118.76617 * 163.01721 * 24 23 22 26 26 C 1.38067 * 120.27904 * 179.73045 * 25 24 23 27 27 C 1.38266 * 119.86165 * 359.93098 * 26 25 24 28 28 C 1.38045 * 119.89464 * 0.11252 * 27 26 25 29 29 C 1.37913 * 121.35234 * 343.14385 * 24 23 22 30 30 C 1.46931 * 120.62555 * 214.30796 * 9 7 2 31 31 H 0.96997 * 119.99580 * 359.97438 * 1 2 3 32 32 H 1.09003 * 109.59027 * 6.62841 * 10 9 7 33 33 H 1.08996 * 109.70834 * 246.27272 * 10 9 7 34 34 H 1.09000 * 109.50032 * 294.68118 * 11 10 9 35 35 H 1.09004 * 109.52510 * 174.60334 * 11 10 9 36 36 H 1.09008 * 109.46489 * 178.61279 * 12 11 10 37 37 H 1.09002 * 109.44714 * 58.64825 * 12 11 10 38 38 H 1.08994 * 109.46751 * 55.00018 * 15 13 12 39 39 H 1.08997 * 109.46596 * 294.99945 * 15 13 12 40 40 H 0.96999 * 120.00104 * 359.97438 * 16 15 13 41 41 H 1.09000 * 109.63744 * 169.64763 * 22 21 19 42 42 H 1.09004 * 109.63246 * 49.05003 * 22 21 19 43 43 H 1.08998 * 109.42258 * 289.13101 * 23 22 21 44 44 H 1.08993 * 109.42424 * 169.31133 * 23 22 21 45 45 H 1.08003 * 119.86043 * 359.70876 * 25 24 23 46 46 H 1.08005 * 120.07097 * 179.90958 * 26 25 24 47 47 H 1.08001 * 120.05002 * 180.08704 * 27 26 25 48 48 H 1.08005 * 119.84988 * 180.02562 * 28 27 26 49 49 H 1.08999 * 109.58398 * 113.80229 * 30 9 7 50 50 H 1.08995 * 109.58560 * 353.37146 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1041 1.6963 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0592 -1.2202 0.2561 9 7 1.3650 -2.3652 -0.3265 10 6 0.2942 -2.3706 -1.3324 11 6 0.6226 -3.4227 -2.3964 12 6 0.8537 -4.7744 -1.7171 13 6 2.0422 -4.6692 -0.7589 14 1 2.9298 -4.3626 -1.3125 15 6 2.2930 -6.0295 -0.1049 16 7 3.5017 -5.9594 0.7199 17 6 3.9204 -7.0477 1.3958 18 8 3.3404 -8.1045 1.2626 19 6 5.1092 -6.9514 2.3170 20 1 5.8368 -7.7173 2.0485 21 8 5.7079 -5.6629 2.1828 22 6 6.7318 -5.4143 3.1527 23 6 6.0717 -5.2434 4.5220 24 6 5.1099 -6.3775 4.7692 25 6 4.6787 -6.6160 6.0646 26 6 3.7936 -7.6429 6.3257 27 6 3.3343 -8.4359 5.2903 28 6 3.7640 -8.1995 3.9999 29 6 4.6595 -7.1741 3.7375 30 6 1.7300 -3.6313 0.3236 31 1 -0.4849 0.8401 0.0004 32 1 0.2263 -1.3878 -1.7991 33 1 -0.6555 -2.6157 -0.8571 34 1 1.5233 -3.1272 -2.9345 35 1 -0.2089 -3.5047 -3.0965 36 1 1.0633 -5.5302 -2.4742 37 1 -0.0388 -5.0574 -1.1590 38 1 2.4245 -6.7859 -0.8786 39 1 1.4408 -6.2942 0.5210 40 1 4.0011 -5.1300 0.7790 41 1 7.2718 -4.5045 2.8903 42 1 7.4217 -6.2577 3.1814 43 1 5.5310 -4.2973 4.5482 44 1 6.8385 -5.2431 5.2966 45 1 5.0369 -5.9961 6.8732 46 1 3.4609 -7.8267 7.3366 47 1 2.6408 -9.2391 5.4909 48 1 3.4044 -8.8191 3.1916 49 1 0.8986 -3.9806 0.9358 50 1 2.6094 -3.4803 0.9496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269688015.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:39 Heat of formation + Delta-G solvation = -45.682141 kcal Electronic energy + Delta-G solvation = -30813.676335 eV Core-core repulsion = 26805.586018 eV Total energy + Delta-G solvation = -4008.090317 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.95837 -39.17938 -37.80526 -37.69042 -34.79346 -33.33104 -32.89781 -31.94459 -30.50359 -30.38672 -29.57630 -26.81343 -25.29878 -24.97505 -24.04969 -22.63654 -22.07755 -21.01678 -20.63337 -20.11844 -19.05855 -17.63021 -17.44723 -16.71377 -16.44039 -15.81058 -15.59615 -15.37856 -15.09488 -14.81434 -14.47591 -14.40089 -13.94582 -13.81268 -13.55105 -13.40286 -13.32351 -12.87851 -12.79810 -12.73440 -12.31333 -12.17019 -12.16184 -12.09279 -11.97307 -11.43437 -11.23263 -11.00770 -10.90791 -10.70460 -10.50653 -10.22514 -10.17912 -10.02445 -9.97321 -9.88037 -9.55636 -9.38423 -8.92893 -8.85869 -8.78394 -8.45644 -6.56772 -5.78502 -3.26994 1.08204 1.22872 2.55694 3.21394 3.34675 3.37713 3.43557 3.44632 3.60695 4.36706 4.39932 4.48828 4.59045 4.78762 4.85673 4.91496 5.00088 5.05123 5.14759 5.21307 5.26571 5.33427 5.45081 5.49020 5.50346 5.55072 5.64483 5.65262 5.81306 5.84345 5.93553 5.97140 6.03115 6.26126 6.26949 6.32936 6.35802 6.38115 6.39904 6.55522 6.62985 6.66732 6.72614 6.82462 6.83008 6.87552 7.01363 7.36805 7.62550 7.64821 7.81499 8.23844 8.49676 9.22838 9.84521 10.45923 11.29639 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010979 B = 0.003152 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2549.738449 B = 8881.207618 C =10140.147903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.010 3.990 3 Si 0.901 3.099 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.259 4.259 8 H 0.061 0.939 9 N -0.589 5.589 10 C 0.174 3.826 11 C -0.141 4.141 12 C -0.099 4.099 13 C -0.117 4.117 14 H 0.073 0.927 15 C 0.124 3.876 16 N -0.704 5.704 17 C 0.532 3.468 18 O -0.542 6.542 19 C 0.118 3.882 20 H 0.101 0.899 21 O -0.368 6.368 22 C 0.063 3.937 23 C -0.119 4.119 24 C -0.064 4.064 25 C -0.124 4.124 26 C -0.111 4.111 27 C -0.126 4.126 28 C -0.101 4.101 29 C -0.117 4.117 30 C 0.154 3.846 31 H 0.254 0.746 32 H 0.074 0.926 33 H 0.019 0.981 34 H 0.054 0.946 35 H 0.049 0.951 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.413 0.587 41 H 0.107 0.893 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.124 0.876 48 H 0.146 0.854 49 H 0.017 0.983 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.504 -15.029 7.819 20.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.190 4.190 3 Si 0.730 3.270 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.208 1.208 7 C -0.389 4.389 8 H 0.079 0.921 9 N -0.311 5.311 10 C 0.048 3.952 11 C -0.181 4.181 12 C -0.137 4.137 13 C -0.138 4.138 14 H 0.092 0.908 15 C 0.001 3.999 16 N -0.355 5.355 17 C 0.316 3.684 18 O -0.421 6.421 19 C 0.057 3.943 20 H 0.119 0.881 21 O -0.286 6.286 22 C -0.014 4.014 23 C -0.156 4.156 24 C -0.064 4.064 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.144 4.144 28 C -0.119 4.119 29 C -0.118 4.118 30 C 0.028 3.972 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.250 0.750 41 H 0.125 0.875 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.142 0.858 48 H 0.163 0.837 49 H 0.035 0.965 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.886 -15.437 7.584 20.355 hybrid contribution 0.620 1.136 0.391 1.352 sum 11.506 -14.301 7.975 20.013 Atomic orbital electron populations 1.70031 1.05373 1.25672 1.53060 1.25191 0.95216 0.98521 1.00046 0.86417 0.78996 0.83403 0.78180 1.20923 1.21647 1.20803 1.19054 0.91952 0.84612 1.43297 0.92096 1.43941 1.41757 1.02952 1.42469 1.20677 0.89881 0.96750 0.87918 1.22167 1.00381 0.96312 0.99215 1.21332 0.97301 0.97650 0.97423 1.21951 0.99332 0.93840 0.98682 0.90819 1.21522 0.86329 0.98258 0.93820 1.46050 1.28135 1.14177 1.47110 1.19857 0.84212 0.84174 0.80144 1.90663 1.57612 1.28677 1.65193 1.20991 0.93906 0.87590 0.91826 0.88120 1.88032 1.53501 1.32707 1.54402 1.22681 0.89227 1.02171 0.87299 1.21184 0.98162 0.97714 0.98535 1.19463 0.98083 0.96008 0.92870 1.21020 0.98840 0.98535 0.95828 1.21176 0.97078 0.95436 0.99233 1.21137 1.00428 1.00100 0.92718 1.21575 0.95313 0.97016 0.97951 1.19667 1.00270 0.98004 0.93829 1.20911 0.97671 0.86694 0.91952 0.93585 0.90756 0.96296 0.92717 0.93213 0.93431 0.92491 0.91817 0.91582 0.75002 0.87476 0.92350 0.88989 0.89480 0.85865 0.85952 0.85833 0.83654 0.96494 0.92986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.13 11.61 55.49 0.64 -25.49 16 2 C 0.01 0.28 4.89 -17.43 -0.09 0.19 16 3 Si 0.90 21.50 29.58 -169.99 -5.03 16.47 16 4 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.26 -7.07 9.51 -15.06 -0.14 -7.22 16 8 H 0.06 1.63 7.88 -52.49 -0.41 1.21 16 9 N -0.59 -14.66 2.96 -172.32 -0.51 -15.17 16 10 C 0.17 4.12 5.27 -3.72 -0.02 4.10 16 11 C -0.14 -2.67 6.08 -26.61 -0.16 -2.83 16 12 C -0.10 -1.65 5.17 -26.70 -0.14 -1.78 16 13 C -0.12 -1.99 2.37 -90.50 -0.21 -2.20 16 14 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 15 C 0.12 1.89 5.07 -4.04 -0.02 1.87 16 16 N -0.70 -10.34 5.28 -60.29 -0.32 -10.66 16 17 C 0.53 7.80 6.93 -10.98 -0.08 7.73 16 18 O -0.54 -9.07 14.65 5.56 0.08 -8.99 16 19 C 0.12 1.44 3.23 -29.06 -0.09 1.35 16 20 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 21 O -0.37 -4.31 9.16 -35.23 -0.32 -4.63 16 22 C 0.06 0.54 6.85 37.14 0.25 0.79 16 23 C -0.12 -1.05 6.00 -27.88 -0.17 -1.22 16 24 C -0.06 -0.71 5.78 -104.59 -0.60 -1.32 16 25 C -0.12 -1.26 9.67 -39.51 -0.38 -1.64 16 26 C -0.11 -1.11 10.05 -39.63 -0.40 -1.51 16 27 C -0.13 -1.38 10.05 -39.64 -0.40 -1.78 16 28 C -0.10 -1.28 9.04 -39.50 -0.36 -1.63 16 29 C -0.12 -1.46 5.46 -104.61 -0.57 -2.03 16 30 C 0.15 3.22 5.60 -3.71 -0.02 3.20 16 31 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.07 1.96 6.52 -51.93 -0.34 1.62 16 33 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.41 5.97 6.50 -40.82 -0.27 5.71 16 41 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 43 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 46 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 47 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 48 H 0.15 1.97 5.76 -52.48 -0.30 1.67 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 50 H 0.05 1.07 7.14 -51.93 -0.37 0.70 16 LS Contribution 391.79 15.07 5.90 5.90 Total: -1.00 -31.52 391.79 -11.16 -42.68 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: -8.01 Total: 5.81 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -3.60 Total: -5.93 kcal Atomic # 7 Polarization: -51.13 SS G_CDS: -0.18 Total: -51.31 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: -0.24 Total: -13.62 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.47 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.52 -11.16 -42.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269688015.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.004 kcal (2) G-P(sol) polarization free energy of solvation -31.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds