Wall clock time and date at job start Wed Apr 1 2020 02:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99978 * 2 1 4 4 H 1.48504 * 109.47049 * 269.99722 * 3 2 1 5 5 H 1.48498 * 109.47083 * 29.99832 * 3 2 1 6 6 H 1.48504 * 109.47126 * 149.99773 * 3 2 1 7 7 C 1.38816 * 120.00105 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00095 * 179.21657 * 7 2 1 9 9 N 1.36932 * 119.99760 * 359.22192 * 7 2 1 10 10 C 1.46924 * 120.63287 * 324.17173 * 9 7 2 11 11 C 1.53190 * 108.77698 * 233.63187 * 10 9 7 12 12 C 1.53032 * 109.31452 * 305.36438 * 11 10 9 13 13 C 1.53045 * 109.54084 * 61.36430 * 12 11 10 14 14 H 1.08999 * 109.51892 * 58.60175 * 13 12 11 15 15 C 1.52996 * 109.49956 * 178.68373 * 13 12 11 16 16 N 1.46505 * 109.46954 * 184.83886 * 15 13 12 17 17 C 1.34768 * 119.99897 * 180.02562 * 16 15 13 18 18 O 1.21287 * 120.00364 * 4.02612 * 17 16 15 19 19 C 1.50707 * 119.99834 * 184.03064 * 17 16 15 20 20 H 1.08998 * 109.33825 * 129.16154 * 19 17 16 21 21 O 1.42723 * 109.33898 * 9.47882 * 19 17 16 22 22 C 1.43223 * 113.11611 * 187.98956 * 21 19 17 23 23 C 1.52961 * 108.47740 * 70.71481 * 22 21 19 24 24 C 1.50741 * 109.77005 * 310.83430 * 23 22 21 25 25 C 1.38600 * 118.77105 * 196.80779 * 24 23 22 26 26 C 1.38067 * 120.27978 * 180.20409 * 25 24 23 27 27 C 1.38254 * 119.86526 * 0.02562 * 26 25 24 28 28 C 1.38055 * 119.89462 * 359.90589 * 27 26 25 29 29 C 1.37910 * 121.35150 * 16.86281 * 24 23 22 30 30 C 1.46927 * 120.63060 * 144.19739 * 9 7 2 31 31 H 0.97005 * 120.00291 * 0.02562 * 1 2 3 32 32 H 1.08994 * 109.59053 * 113.84562 * 10 9 7 33 33 H 1.09004 * 109.70580 * 353.48933 * 10 9 7 34 34 H 1.08998 * 109.49857 * 65.31868 * 11 10 9 35 35 H 1.09000 * 109.49836 * 185.41173 * 11 10 9 36 36 H 1.09005 * 109.46187 * 181.38211 * 12 11 10 37 37 H 1.09000 * 109.46380 * 301.34577 * 12 11 10 38 38 H 1.08996 * 109.47520 * 304.83686 * 15 13 12 39 39 H 1.08999 * 109.46911 * 64.84216 * 15 13 12 40 40 H 0.97002 * 119.99787 * 359.97438 * 16 15 13 41 41 H 1.09001 * 109.63110 * 190.41458 * 22 21 19 42 42 H 1.08996 * 109.63330 * 311.01233 * 22 21 19 43 43 H 1.08998 * 109.42274 * 70.93165 * 23 22 21 44 44 H 1.09004 * 109.41850 * 190.80828 * 23 22 21 45 45 H 1.08004 * 119.85517 * 0.20247 * 25 24 23 46 46 H 1.08000 * 120.06277 * 180.02562 * 26 25 24 47 47 H 1.07994 * 120.05326 * 179.97438 * 27 26 25 48 48 H 1.08001 * 119.85018 * 180.02562 * 28 27 26 49 49 H 1.09005 * 109.58450 * 246.15636 * 30 9 7 50 50 H 1.09001 * 109.58518 * 6.57870 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 -0.0123 9 7 1.3256 -2.3880 0.0172 10 6 0.0725 -2.5184 0.7729 11 6 0.1897 -3.7175 1.7191 12 6 0.5705 -4.9620 0.9141 13 6 1.9282 -4.7418 0.2429 14 1 2.6807 -4.5329 1.0032 15 6 2.3232 -5.9988 -0.5348 16 7 3.6723 -5.8313 -1.0810 17 6 4.2322 -6.8182 -1.8081 18 8 3.5930 -7.8146 -2.0721 19 6 5.6528 -6.6839 -2.2931 20 1 6.2125 -7.5795 -2.0234 21 8 6.2565 -5.5461 -1.6782 22 6 7.5466 -5.2344 -2.2166 23 6 7.3614 -4.6852 -3.6321 24 6 6.4564 -5.5985 -4.4190 25 6 6.4365 -5.4895 -5.8006 26 6 5.6161 -6.3075 -6.5517 27 6 4.8107 -7.2389 -5.9231 28 6 4.8310 -7.3492 -4.5472 29 6 5.6558 -6.5299 -3.7918 30 6 1.8306 -3.5543 -0.7200 31 1 -0.4851 0.8401 -0.0004 32 1 -0.7558 -2.6774 0.0825 33 1 -0.1035 -1.6118 1.3521 34 1 0.9582 -3.5179 2.4658 35 1 -0.7662 -3.8838 2.2157 36 1 0.6306 -5.8218 1.5814 37 1 -0.1859 -5.1467 0.1513 38 1 2.3061 -6.8598 0.1332 39 1 1.6181 -6.1578 -1.3507 40 1 4.1621 -5.0097 -0.9199 41 1 8.0320 -4.4837 -1.5929 42 1 8.1570 -6.1367 -2.2507 43 1 6.9169 -3.6913 -3.5800 44 1 8.3309 -4.6232 -4.1265 45 1 7.0653 -4.7615 -6.2916 46 1 5.6037 -6.2198 -7.6281 47 1 4.1676 -7.8800 -6.5077 48 1 4.2018 -8.0774 -4.0569 49 1 1.1457 -3.7977 -1.5323 50 1 2.8173 -3.3309 -1.1258 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269688019.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:37:46 Heat of formation + Delta-G solvation = -45.208789 kcal Electronic energy + Delta-G solvation = -30808.181199 eV Core-core repulsion = 26800.111408 eV Total energy + Delta-G solvation = -4008.069791 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.96363 -39.18183 -37.80766 -37.67593 -34.78782 -33.34646 -32.90287 -31.96211 -30.46492 -30.37336 -29.57758 -26.80403 -25.30712 -24.96291 -24.06412 -22.65073 -22.06823 -20.96400 -20.64296 -20.11289 -19.03970 -17.63452 -17.45054 -16.74356 -16.45588 -15.81133 -15.61088 -15.34616 -15.11143 -14.83505 -14.48007 -14.38574 -13.94255 -13.81510 -13.53624 -13.38262 -13.32812 -12.88995 -12.78821 -12.72360 -12.27555 -12.17458 -12.13188 -12.08440 -11.97264 -11.43259 -11.27419 -10.93706 -10.90390 -10.74708 -10.49254 -10.18462 -10.15869 -10.03014 -9.95514 -9.87513 -9.52557 -9.40289 -8.92727 -8.87300 -8.79029 -8.45343 -6.52058 -5.77402 -3.30729 1.07386 1.21522 2.55319 3.20406 3.35034 3.36796 3.43125 3.44223 3.59714 4.35614 4.38513 4.47682 4.57502 4.77595 4.84374 4.90426 4.99068 5.04922 5.16334 5.20000 5.25427 5.35509 5.45051 5.47484 5.51323 5.55044 5.62935 5.67709 5.80026 5.86956 5.92125 5.98301 6.05239 6.25036 6.28915 6.32268 6.35887 6.39098 6.42877 6.55344 6.65379 6.66393 6.75875 6.81588 6.83823 6.92017 7.02392 7.47348 7.64483 7.77776 7.81162 8.23734 8.53178 9.25831 9.84857 10.45797 11.29756 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010566 B = 0.003207 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2649.480512 B = 8727.472018 C =10058.524058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.009 3.991 3 Si 0.903 3.097 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.255 4.255 8 H 0.062 0.938 9 N -0.592 5.592 10 C 0.169 3.831 11 C -0.143 4.143 12 C -0.099 4.099 13 C -0.118 4.118 14 H 0.073 0.927 15 C 0.124 3.876 16 N -0.704 5.704 17 C 0.532 3.468 18 O -0.542 6.542 19 C 0.118 3.882 20 H 0.102 0.898 21 O -0.367 6.367 22 C 0.062 3.938 23 C -0.119 4.119 24 C -0.065 4.065 25 C -0.124 4.124 26 C -0.111 4.111 27 C -0.125 4.125 28 C -0.101 4.101 29 C -0.117 4.117 30 C 0.155 3.845 31 H 0.254 0.746 32 H 0.015 0.985 33 H 0.090 0.910 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.413 0.587 41 H 0.107 0.893 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.087 0.913 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.124 0.876 48 H 0.144 0.856 49 H 0.017 0.983 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.889 -13.771 -7.080 20.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.190 4.190 3 Si 0.732 3.268 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.080 0.920 9 N -0.314 5.314 10 C 0.044 3.956 11 C -0.182 4.182 12 C -0.137 4.137 13 C -0.138 4.138 14 H 0.091 0.909 15 C 0.001 3.999 16 N -0.354 5.354 17 C 0.316 3.684 18 O -0.422 6.422 19 C 0.057 3.943 20 H 0.120 0.880 21 O -0.286 6.286 22 C -0.014 4.014 23 C -0.156 4.156 24 C -0.065 4.065 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.143 4.143 28 C -0.119 4.119 29 C -0.118 4.118 30 C 0.028 3.972 31 H 0.064 0.936 32 H 0.034 0.966 33 H 0.108 0.892 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.249 0.751 41 H 0.125 0.875 42 H 0.077 0.923 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.142 0.858 48 H 0.162 0.838 49 H 0.035 0.965 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 13.215 -14.177 -7.077 20.632 hybrid contribution 0.740 1.168 -0.314 1.418 sum 13.955 -13.009 -7.391 20.460 Atomic orbital electron populations 1.69929 1.05343 1.25431 1.54072 1.25311 0.95484 0.98296 0.99870 0.86295 0.79135 0.83626 0.77714 1.21317 1.21632 1.20401 1.19132 0.90094 0.83206 1.46024 0.92025 1.43949 1.25483 1.07746 1.54243 1.20848 0.87209 0.95375 0.92189 1.22203 0.99546 0.97230 0.99229 1.21339 0.95864 0.97789 0.98728 1.21952 0.98138 0.94758 0.98970 0.90851 1.21528 0.82410 0.98431 0.97577 1.46049 1.17788 1.19430 1.52163 1.19852 0.87037 0.83323 0.78183 1.90677 1.62923 1.30863 1.57687 1.21026 0.92607 0.90975 0.89717 0.88022 1.88049 1.33205 1.47206 1.60152 1.22683 0.84330 1.00458 0.93957 1.21185 0.99343 0.99404 0.95653 1.19462 0.97216 0.95873 0.93936 1.21024 1.00246 0.99983 0.92918 1.21172 0.96128 0.95719 0.99894 1.21135 0.99503 0.99109 0.94550 1.21528 0.97370 0.98835 0.94118 1.19687 0.99369 0.98512 0.94250 1.20913 0.97436 0.87012 0.91857 0.93569 0.96640 0.89154 0.92857 0.93309 0.93541 0.92547 0.91901 0.91496 0.75052 0.87500 0.92338 0.89004 0.89473 0.85854 0.85930 0.85808 0.83826 0.96472 0.93107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.12 10.86 55.49 0.60 -25.51 16 2 C 0.01 0.26 5.23 -17.43 -0.09 0.17 16 3 Si 0.90 21.51 29.55 -169.99 -5.02 16.49 16 4 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.25 -6.94 9.55 -15.06 -0.14 -7.09 16 8 H 0.06 1.65 7.83 -52.49 -0.41 1.23 16 9 N -0.59 -14.79 2.98 -172.32 -0.51 -15.31 16 10 C 0.17 4.07 5.22 -3.71 -0.02 4.05 16 11 C -0.14 -2.74 6.08 -26.62 -0.16 -2.90 16 12 C -0.10 -1.67 5.17 -26.69 -0.14 -1.81 16 13 C -0.12 -2.01 2.38 -90.50 -0.22 -2.22 16 14 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 15 C 0.12 1.90 5.07 -4.04 -0.02 1.88 16 16 N -0.70 -10.37 5.25 -60.29 -0.32 -10.69 16 17 C 0.53 7.82 6.85 -10.99 -0.08 7.75 16 18 O -0.54 -9.13 14.82 5.55 0.08 -9.05 16 19 C 0.12 1.44 3.22 -29.05 -0.09 1.34 16 20 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 21 O -0.37 -4.26 9.20 -35.23 -0.32 -4.58 16 22 C 0.06 0.52 6.85 37.14 0.25 0.78 16 23 C -0.12 -1.03 6.00 -27.88 -0.17 -1.19 16 24 C -0.06 -0.71 5.78 -104.59 -0.60 -1.32 16 25 C -0.12 -1.24 9.67 -39.51 -0.38 -1.62 16 26 C -0.11 -1.10 10.05 -39.64 -0.40 -1.50 16 27 C -0.12 -1.37 10.05 -39.64 -0.40 -1.76 16 28 C -0.10 -1.27 9.06 -39.50 -0.36 -1.63 16 29 C -0.12 -1.45 5.46 -104.61 -0.57 -2.02 16 30 C 0.15 3.23 5.60 -3.71 -0.02 3.21 16 31 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 32 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 2.43 6.13 -51.93 -0.32 2.11 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.41 6.00 6.56 -40.82 -0.27 5.73 16 41 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.06 0.42 8.07 -51.93 -0.42 0.00 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.12 0.96 8.06 -52.48 -0.42 0.54 16 46 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 47 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 48 H 0.14 1.95 5.85 -52.49 -0.31 1.64 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 50 H 0.05 1.04 7.13 -51.93 -0.37 0.67 16 LS Contribution 391.20 15.07 5.90 5.90 Total: -1.00 -31.35 391.20 -11.20 -42.55 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.99 Total: 6.11 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -3.60 Total: -5.90 kcal Atomic # 7 Polarization: -51.28 SS G_CDS: -0.23 Total: -51.51 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.24 Total: -13.64 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.35 -11.20 -42.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269688019.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.662 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds