Wall clock time and date at job start Wed Apr 1 2020 02:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99950 * 2 1 4 4 H 1.48495 * 109.47123 * 269.99839 * 3 2 1 5 5 H 1.48499 * 109.47134 * 29.99838 * 3 2 1 6 6 H 1.48500 * 109.47406 * 149.99722 * 3 2 1 7 7 C 1.37873 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00475 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99758 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47077 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47233 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00047 * 179.97438 * 12 11 10 14 14 O 1.21352 * 120.00298 * 0.02562 * 13 12 11 15 15 C 1.49444 * 120.00080 * 180.02562 * 13 12 11 16 16 O 1.21358 * 120.00226 * 0.02562 * 15 13 12 17 17 N 1.34782 * 120.00293 * 180.02562 * 15 13 12 18 18 C 1.46499 * 120.00090 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.47048 * 182.99649 * 18 17 15 20 20 C 1.50697 * 112.84436 * 305.63261 * 19 18 17 21 21 C 1.38238 * 119.99798 * 282.14593 * 20 19 18 22 22 C 1.38240 * 119.99857 * 179.79236 * 21 20 19 23 23 C 1.38239 * 120.00053 * 0.46526 * 22 21 20 24 24 C 1.38244 * 119.99754 * 359.76769 * 23 22 21 25 25 C 1.38232 * 119.99938 * 102.42935 * 20 19 18 26 26 C 1.53780 * 113.61480 * 174.43900 * 19 18 17 27 27 C 1.53787 * 87.08160 * 270.79647 * 26 19 18 28 28 C 1.53781 * 87.16978 * 334.52662 * 27 26 19 29 29 H 0.97003 * 120.00119 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47360 * 60.00297 * 9 7 2 31 31 H 1.09005 * 109.47342 * 300.00273 * 9 7 2 32 32 H 1.08994 * 109.47008 * 60.00356 * 10 9 7 33 33 H 1.08998 * 109.47119 * 299.99801 * 10 9 7 34 34 H 1.09005 * 109.47087 * 59.99917 * 11 10 9 35 35 H 1.09005 * 109.47371 * 300.00035 * 11 10 9 36 36 H 0.96996 * 119.99911 * 0.02562 * 12 11 10 37 37 H 0.96996 * 119.99829 * 0.02562 * 17 15 13 38 38 H 1.08994 * 109.47255 * 62.98727 * 18 17 15 39 39 H 1.09010 * 109.46650 * 302.99255 * 18 17 15 40 40 H 1.07994 * 120.00561 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.00150 * 180.26308 * 22 21 20 42 42 H 1.07995 * 120.00320 * 179.79483 * 23 22 21 43 43 H 1.07991 * 119.99847 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.00295 * 359.97438 * 25 20 19 45 45 H 1.09004 * 113.61700 * 156.25019 * 26 19 18 46 46 H 1.09003 * 113.69488 * 25.35447 * 26 19 18 47 47 H 1.08998 * 113.61409 * 89.11226 * 27 26 19 48 48 H 1.08993 * 113.61403 * 219.93941 * 27 26 19 49 49 H 1.08999 * 113.61665 * 140.02571 * 28 27 26 50 50 H 1.09005 * 113.61370 * 270.92520 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5514 -2.6366 0.0009 12 7 6.0398 -4.0178 0.0014 13 6 7.3649 -4.2640 0.0010 14 8 8.1535 -3.3417 0.0006 15 6 7.8631 -5.6730 0.0009 16 8 7.0745 -6.5955 0.0008 17 7 9.1882 -5.9193 0.0009 18 6 9.6765 -7.3005 0.0003 19 6 11.2046 -7.3012 0.0759 20 6 11.8444 -6.4723 -1.0079 21 6 11.9440 -6.9725 -2.2927 22 6 12.5270 -6.2104 -3.2879 23 6 13.0190 -4.9520 -2.9960 24 6 12.9238 -4.4537 -1.7100 25 6 12.3369 -5.2141 -0.7159 26 6 11.8138 -8.7061 0.2176 27 6 11.6876 -8.5217 1.7391 28 6 11.7548 -7.0066 1.4843 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6585 -3.1501 -0.8892 33 1 3.6578 -3.1506 0.8907 34 1 5.9148 -2.1228 0.8910 35 1 5.9148 -2.1226 -0.8890 36 1 5.4095 -4.7550 0.0014 37 1 9.8185 -5.1821 0.0014 38 1 9.3577 -7.7982 -0.9155 39 1 9.2698 -7.8300 0.8620 40 1 11.5629 -7.9571 -2.5200 41 1 12.6009 -6.5995 -4.2926 42 1 13.4775 -4.3579 -3.7727 43 1 13.3086 -3.4708 -1.4819 44 1 12.2629 -4.8250 0.2888 45 1 12.8447 -8.7722 -0.1302 46 1 11.1813 -9.4999 -0.1800 47 1 10.7309 -8.8547 2.1414 48 1 12.5396 -8.9087 2.2979 49 1 11.0738 -6.4282 2.1085 50 1 12.7697 -6.6088 1.4822 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000284670530.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:41 Heat of formation + Delta-G solvation = -41.227927 kcal Electronic energy + Delta-G solvation = -29089.438007 eV Core-core repulsion = 25081.540840 eV Total energy + Delta-G solvation = -4007.897168 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.23855 -40.31965 -38.60669 -38.21324 -35.86786 -34.68160 -33.29749 -31.56845 -31.47471 -31.29404 -28.63684 -27.47511 -26.33740 -25.07975 -23.85413 -22.65211 -22.27295 -21.89631 -20.76197 -20.20465 -19.23781 -18.21320 -17.54739 -16.93737 -16.71135 -16.33928 -16.07995 -15.57830 -15.48386 -15.20805 -15.05456 -14.78280 -14.53664 -14.16345 -13.94174 -13.76170 -13.66754 -13.42821 -13.18168 -12.73675 -12.72661 -12.71943 -12.21956 -12.07621 -11.96810 -11.89513 -11.73525 -11.49314 -11.11376 -11.06185 -10.92069 -10.78911 -10.68874 -10.17453 -9.97927 -9.78624 -9.51747 -9.49400 -9.25087 -9.23987 -9.06155 -9.05294 -8.56274 -6.06603 -4.05544 0.99095 1.06225 1.38528 2.28768 3.18725 3.30456 3.38064 3.41165 3.41622 3.56923 3.91216 4.05244 4.20748 4.31030 4.33665 4.43526 4.48450 4.66157 4.68463 4.79584 4.93425 5.08145 5.17139 5.20008 5.26521 5.27064 5.28489 5.32300 5.44352 5.46452 5.50594 5.57169 5.64267 5.67195 5.70384 5.89031 5.93434 5.95872 6.14994 6.16746 6.19554 6.23076 6.39140 6.54379 6.65071 6.74090 6.87978 7.20144 7.33506 7.35085 7.68217 7.74768 7.99734 8.49840 8.97516 9.55198 11.06588 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.001908 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.671319 B =14669.520952 C =15596.810344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.880 3.120 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.073 0.927 9 C -0.010 4.010 10 C -0.115 4.115 11 C 0.112 3.888 12 N -0.691 5.691 13 C 0.501 3.499 14 O -0.526 6.526 15 C 0.508 3.492 16 O -0.520 6.520 17 N -0.699 5.699 18 C 0.146 3.854 19 C -0.061 4.061 20 C -0.070 4.070 21 C -0.111 4.111 22 C -0.118 4.118 23 C -0.122 4.122 24 C -0.114 4.114 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.143 4.143 28 C -0.131 4.131 29 H 0.263 0.737 30 H 0.019 0.981 31 H 0.015 0.985 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.070 0.930 36 H 0.412 0.588 37 H 0.413 0.587 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.121 0.879 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.089 0.911 46 H 0.074 0.926 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.073 0.927 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.268 -18.002 -1.149 36.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.091 0.909 9 C -0.048 4.048 10 C -0.153 4.153 11 C -0.011 4.011 12 N -0.343 5.343 13 C 0.281 3.719 14 O -0.403 6.403 15 C 0.288 3.712 16 O -0.396 6.396 17 N -0.353 5.353 18 C 0.023 3.977 19 C -0.061 4.061 20 C -0.070 4.070 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.140 4.140 24 C -0.132 4.132 25 C -0.135 4.135 26 C -0.156 4.156 27 C -0.180 4.180 28 C -0.169 4.169 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.033 0.967 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.249 0.751 37 H 0.250 0.750 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.139 0.861 43 H 0.141 0.859 44 H 0.141 0.859 45 H 0.107 0.893 46 H 0.093 0.907 47 H 0.102 0.898 48 H 0.090 0.910 49 H 0.092 0.908 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 31.083 -17.879 -1.142 35.876 hybrid contribution 0.319 1.002 -0.153 1.063 sum 31.402 -16.877 -1.295 35.673 Atomic orbital electron populations 1.69913 1.06307 1.26951 1.50918 1.25034 0.94766 0.99241 0.94493 0.86769 0.80375 0.83534 0.78565 1.20254 1.21369 1.18914 1.21088 0.89247 0.94569 1.51128 0.90933 1.19505 0.97371 0.91259 0.96702 1.21740 0.90127 1.01262 1.02181 1.21846 0.96661 0.80106 1.02455 1.46008 1.06062 1.11083 1.71157 1.20010 0.83975 0.89015 0.78944 1.90755 1.55261 1.45480 1.48812 1.20304 0.83185 0.89946 0.77736 1.90769 1.55205 1.45716 1.47867 1.45690 1.06708 1.09659 1.73254 1.21187 0.90729 0.82588 1.03185 1.21110 0.93632 0.97090 0.94306 1.19561 0.98791 0.94599 0.94051 1.20959 0.99523 1.00006 0.92425 1.21156 0.98495 0.94742 0.99162 1.21192 1.00028 0.96003 0.96802 1.21180 0.99073 0.99748 0.93174 1.21074 0.98891 0.93924 0.99659 1.22922 1.01444 0.94593 0.96647 1.22852 1.02621 0.96240 0.96273 1.23106 1.01828 0.97241 0.94676 0.92688 0.96241 0.96685 0.91820 0.91782 0.91118 0.91131 0.75147 0.75018 0.90585 0.90035 0.86153 0.86097 0.86136 0.85912 0.85879 0.89294 0.90740 0.89758 0.91000 0.90800 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.73 13.96 55.43 0.77 -26.95 16 2 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 3 Si 0.88 21.62 27.47 -169.99 -4.67 16.95 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 7 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.77 16 9 C -0.01 -0.24 4.04 -27.88 -0.11 -0.35 16 10 C -0.12 -2.14 5.27 -26.73 -0.14 -2.28 16 11 C 0.11 1.81 5.67 -4.04 -0.02 1.79 16 12 N -0.69 -10.08 5.55 -60.73 -0.34 -10.41 16 13 C 0.50 7.36 7.89 -11.59 -0.09 7.27 16 14 O -0.53 -8.72 16.48 5.49 0.09 -8.63 16 15 C 0.51 6.65 7.89 -11.59 -0.09 6.56 16 16 O -0.52 -7.70 16.48 5.49 0.09 -7.61 16 17 N -0.70 -7.22 5.35 -60.73 -0.32 -7.54 16 18 C 0.15 1.19 4.97 -4.04 -0.02 1.17 16 19 C -0.06 -0.38 0.73 -154.71 -0.11 -0.50 16 20 C -0.07 -0.51 4.23 -104.63 -0.44 -0.96 16 21 C -0.11 -0.82 9.38 -39.58 -0.37 -1.19 16 22 C -0.12 -0.86 10.05 -39.58 -0.40 -1.26 16 23 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 24 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 25 C -0.12 -0.90 8.12 -39.58 -0.32 -1.22 16 26 C -0.12 -0.58 6.84 -25.92 -0.18 -0.76 16 27 C -0.14 -0.70 7.72 -25.92 -0.20 -0.90 16 28 C -0.13 -0.74 6.22 -25.78 -0.16 -0.90 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 31 H 0.01 0.34 7.57 -51.93 -0.39 -0.05 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.41 5.53 7.94 -40.82 -0.32 5.21 16 37 H 0.41 4.17 6.60 -40.82 -0.27 3.90 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.08 0.66 7.32 -51.92 -0.38 0.28 16 40 H 0.12 0.73 8.01 -52.49 -0.42 0.31 16 41 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 43 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.81 7.05 -52.49 -0.37 0.44 16 45 H 0.09 0.43 8.09 -51.93 -0.42 0.01 16 46 H 0.07 0.33 8.10 -51.93 -0.42 -0.09 16 47 H 0.08 0.42 7.61 -51.93 -0.40 0.02 16 48 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 50 H 0.09 0.47 7.48 -51.93 -0.39 0.08 16 LS Contribution 410.69 15.07 6.19 6.19 Total: -1.00 -32.85 410.69 -10.04 -42.90 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -7.97 Total: 4.43 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.89 Total: -9.32 kcal Atomic # 7 Polarization: -45.02 SS G_CDS: 0.11 Total: -44.91 kcal Atomic # 8 Polarization: -16.42 SS G_CDS: 0.18 Total: -16.24 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.85 -10.04 -42.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284670530.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.670 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds