Wall clock time and date at job start Wed Apr 1 2020 02:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 119.99950 * 2 1 4 4 H 1.48495 * 109.47123 * 269.99839 * 3 2 1 5 5 H 1.48499 * 109.47134 * 29.99838 * 3 2 1 6 6 H 1.48500 * 109.47406 * 149.99722 * 3 2 1 7 7 C 1.37873 * 119.99797 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00475 * 0.02562 * 7 2 1 9 9 C 1.50702 * 119.99758 * 180.02562 * 7 2 1 10 10 C 1.53004 * 109.47042 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47077 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47233 * 179.97438 * 11 10 9 13 13 C 1.34776 * 120.00047 * 179.97438 * 12 11 10 14 14 O 1.21352 * 120.00298 * 0.02562 * 13 12 11 15 15 C 1.49444 * 120.00080 * 180.02562 * 13 12 11 16 16 O 1.21358 * 120.00226 * 0.02562 * 15 13 12 17 17 N 1.34782 * 120.00293 * 180.02562 * 15 13 12 18 18 C 1.46499 * 120.00090 * 180.02562 * 17 15 13 19 19 C 1.53000 * 109.47048 * 182.99649 * 18 17 15 20 20 C 1.50697 * 112.84436 * 305.63261 * 19 18 17 21 21 C 1.38238 * 119.99798 * 282.14593 * 20 19 18 22 22 C 1.38240 * 119.99857 * 179.79236 * 21 20 19 23 23 C 1.38239 * 120.00053 * 0.46526 * 22 21 20 24 24 C 1.38244 * 119.99754 * 359.76769 * 23 22 21 25 25 C 1.38232 * 119.99938 * 102.42935 * 20 19 18 26 26 C 1.53780 * 113.61480 * 174.43900 * 19 18 17 27 27 C 1.53787 * 87.08160 * 270.79647 * 26 19 18 28 28 C 1.53781 * 87.16978 * 334.52662 * 27 26 19 29 29 H 0.97003 * 120.00119 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47360 * 60.00297 * 9 7 2 31 31 H 1.09005 * 109.47342 * 300.00273 * 9 7 2 32 32 H 1.08994 * 109.47008 * 60.00356 * 10 9 7 33 33 H 1.08998 * 109.47119 * 299.99801 * 10 9 7 34 34 H 1.09005 * 109.47087 * 59.99917 * 11 10 9 35 35 H 1.09005 * 109.47371 * 300.00035 * 11 10 9 36 36 H 0.96996 * 119.99911 * 0.02562 * 12 11 10 37 37 H 0.96996 * 119.99829 * 0.02562 * 17 15 13 38 38 H 1.08994 * 109.47255 * 62.98727 * 18 17 15 39 39 H 1.09010 * 109.46650 * 302.99255 * 18 17 15 40 40 H 1.07994 * 120.00561 * 0.02562 * 21 20 19 41 41 H 1.07998 * 120.00150 * 180.26308 * 22 21 20 42 42 H 1.07995 * 120.00320 * 179.79483 * 23 22 21 43 43 H 1.07991 * 119.99847 * 179.97438 * 24 23 22 44 44 H 1.07995 * 120.00295 * 359.97438 * 25 20 19 45 45 H 1.09004 * 113.61700 * 156.25019 * 26 19 18 46 46 H 1.09003 * 113.69488 * 25.35447 * 26 19 18 47 47 H 1.08998 * 113.61409 * 89.11226 * 27 26 19 48 48 H 1.08993 * 113.61403 * 219.93941 * 27 26 19 49 49 H 1.08999 * 113.61665 * 140.02571 * 28 27 26 50 50 H 1.09005 * 113.61370 * 270.92520 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0044 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5514 -2.6366 0.0009 12 7 6.0398 -4.0178 0.0014 13 6 7.3649 -4.2640 0.0010 14 8 8.1535 -3.3417 0.0006 15 6 7.8631 -5.6730 0.0009 16 8 7.0745 -6.5955 0.0008 17 7 9.1882 -5.9193 0.0009 18 6 9.6765 -7.3005 0.0003 19 6 11.2046 -7.3012 0.0759 20 6 11.8444 -6.4723 -1.0079 21 6 11.9440 -6.9725 -2.2927 22 6 12.5270 -6.2104 -3.2879 23 6 13.0190 -4.9520 -2.9960 24 6 12.9238 -4.4537 -1.7100 25 6 12.3369 -5.2141 -0.7159 26 6 11.8138 -8.7061 0.2176 27 6 11.6876 -8.5217 1.7391 28 6 11.7548 -7.0066 1.4843 29 1 -0.4850 0.8401 -0.0004 30 1 3.8745 -0.6801 0.8911 31 1 3.8752 -0.6803 -0.8888 32 1 3.6585 -3.1501 -0.8892 33 1 3.6578 -3.1506 0.8907 34 1 5.9148 -2.1228 0.8910 35 1 5.9148 -2.1226 -0.8890 36 1 5.4095 -4.7550 0.0014 37 1 9.8185 -5.1821 0.0014 38 1 9.3577 -7.7982 -0.9155 39 1 9.2698 -7.8300 0.8620 40 1 11.5629 -7.9571 -2.5200 41 1 12.6009 -6.5995 -4.2926 42 1 13.4775 -4.3579 -3.7727 43 1 13.3086 -3.4708 -1.4819 44 1 12.2629 -4.8250 0.2888 45 1 12.8447 -8.7722 -0.1302 46 1 11.1813 -9.4999 -0.1800 47 1 10.7309 -8.8547 2.1414 48 1 12.5396 -8.9087 2.2979 49 1 11.0738 -6.4282 2.1085 50 1 12.7697 -6.6088 1.4822 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000284670530.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:55:40 Heat of formation + Delta-G solvation = -61.476817 kcal Electronic energy + Delta-G solvation = -29090.316065 eV Core-core repulsion = 25081.540840 eV Total energy + Delta-G solvation = -4008.775225 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.99873 -41.19889 -39.60706 -38.82525 -37.23154 -35.72962 -35.04082 -33.30090 -32.09742 -31.82039 -29.66303 -28.87973 -26.79012 -26.07007 -24.89801 -23.62707 -23.13577 -22.41833 -22.28566 -21.35426 -20.12689 -19.12419 -18.78731 -18.15937 -17.87125 -17.26723 -16.92030 -16.65997 -16.40614 -16.13630 -16.01266 -15.74681 -15.61223 -15.24007 -14.96770 -14.78635 -14.76668 -14.28171 -14.03367 -13.94881 -13.81653 -13.62113 -13.26321 -13.17693 -12.93861 -12.75230 -12.70782 -12.67045 -12.37984 -11.97682 -11.91178 -11.78558 -11.61080 -11.50233 -11.33809 -11.27771 -11.14392 -10.75636 -10.74349 -10.37792 -10.27764 -9.79948 -9.59580 -8.28390 -6.32807 0.27759 0.44920 0.51388 1.25916 1.38390 1.39954 1.51773 2.07858 2.37421 2.57317 2.86722 3.07224 3.35147 3.43426 3.53862 3.77604 3.77755 3.92560 4.01101 4.15460 4.16574 4.18168 4.30665 4.45203 4.47154 4.50859 4.59222 4.69812 4.75529 4.80233 4.85641 4.86279 4.87007 5.01384 5.01827 5.08357 5.11735 5.14898 5.16669 5.18401 5.28138 5.45747 5.47986 5.54978 5.62458 5.64848 5.65841 5.68778 5.86380 6.13022 6.27866 6.28211 6.65214 6.75469 6.87478 7.31809 8.88107 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016402 B = 0.001908 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.671319 B =14669.520952 C =15596.810344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.001 3.999 3 Si 0.951 3.049 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.035 0.965 9 C -0.011 4.011 10 C -0.104 4.104 11 C 0.124 3.876 12 N -0.688 5.688 13 C 0.502 3.498 14 O -0.545 6.545 15 C 0.511 3.489 16 O -0.540 6.540 17 N -0.685 5.685 18 C 0.144 3.856 19 C -0.058 4.058 20 C -0.075 4.075 21 C -0.121 4.121 22 C -0.128 4.128 23 C -0.134 4.134 24 C -0.127 4.127 25 C -0.128 4.128 26 C -0.111 4.111 27 C -0.140 4.140 28 C -0.131 4.131 29 H 0.266 0.734 30 H 0.025 0.975 31 H 0.023 0.977 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.418 0.582 37 H 0.415 0.585 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.131 0.869 41 H 0.135 0.865 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.129 0.871 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.079 0.921 49 H 0.066 0.934 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.774 -18.121 -1.151 38.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.195 4.195 3 Si 0.774 3.226 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.167 1.167 7 C -0.570 4.570 8 H 0.053 0.947 9 C -0.049 4.049 10 C -0.142 4.142 11 C 0.001 3.999 12 N -0.340 5.340 13 C 0.282 3.718 14 O -0.423 6.423 15 C 0.291 3.709 16 O -0.417 6.417 17 N -0.338 5.338 18 C 0.022 3.978 19 C -0.058 4.058 20 C -0.075 4.075 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.145 4.145 25 C -0.146 4.146 26 C -0.149 4.149 27 C -0.177 4.177 28 C -0.168 4.168 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.042 0.958 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.256 0.744 37 H 0.253 0.747 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.149 0.851 41 H 0.153 0.847 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.147 0.853 45 H 0.111 0.889 46 H 0.100 0.900 47 H 0.102 0.898 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 33.628 -18.030 -1.144 38.174 hybrid contribution -0.473 0.955 -0.168 1.079 sum 33.155 -17.075 -1.312 37.317 Atomic orbital electron populations 1.70070 1.08323 1.28144 1.52667 1.26039 0.95644 1.03632 0.94203 0.85650 0.79588 0.78178 0.79201 1.19228 1.21183 1.16704 1.21469 0.92025 0.93195 1.50327 0.94712 1.19461 0.93964 0.94283 0.97159 1.21520 0.91936 0.98498 1.02272 1.21556 0.94596 0.81047 1.02684 1.45886 1.06404 1.10641 1.71060 1.20271 0.83637 0.89635 0.78228 1.90746 1.55659 1.46219 1.49696 1.19988 0.83926 0.88847 0.78095 1.90767 1.55794 1.45802 1.49361 1.45721 1.05726 1.10839 1.71495 1.21353 0.92013 0.81136 1.03321 1.21060 0.92232 0.98102 0.94442 1.19682 0.98813 0.94636 0.94359 1.21184 0.99578 1.00610 0.92526 1.21422 0.98326 0.94817 0.99978 1.21445 1.00168 0.96383 0.97181 1.21418 0.99308 1.00371 0.93448 1.21243 0.99135 0.94201 1.00053 1.22908 1.01633 0.93714 0.96662 1.22851 1.03004 0.95501 0.96347 1.23116 1.01837 0.97836 0.94012 0.92538 0.95634 0.95819 0.91845 0.91766 0.90885 0.90961 0.74441 0.74741 0.90625 0.89640 0.85078 0.84692 0.84873 0.84986 0.85294 0.88891 0.90031 0.89754 0.90192 0.91481 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.70 13.96 21.45 0.30 -59.40 16 2 C 0.00 0.09 5.47 84.65 0.46 0.55 16 3 Si 0.95 43.98 27.47 68.60 1.88 45.86 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 6 H -0.24 -10.37 6.54 99.48 0.65 -9.72 16 7 C -0.53 -30.27 9.66 25.60 0.25 -30.02 16 8 H 0.03 2.17 7.99 -2.91 -0.02 2.14 16 9 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 10 C -0.10 -3.77 5.27 30.59 0.16 -3.61 16 11 C 0.12 3.80 5.67 86.38 0.49 4.29 16 12 N -0.69 -19.10 5.55 -464.41 -2.58 -21.68 16 13 C 0.50 14.11 7.89 87.27 0.69 14.80 16 14 O -0.55 -17.30 16.48 -3.25 -0.05 -17.35 16 15 C 0.51 12.80 7.89 87.27 0.69 13.49 16 16 O -0.54 -15.40 16.48 -3.27 -0.05 -15.46 16 17 N -0.68 -13.30 5.35 -464.40 -2.48 -15.78 16 18 C 0.14 2.14 4.97 86.38 0.43 2.57 16 19 C -0.06 -0.64 0.73 -52.31 -0.04 -0.68 16 20 C -0.07 -1.00 4.23 -19.87 -0.08 -1.09 16 21 C -0.12 -1.62 9.38 22.27 0.21 -1.42 16 22 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 23 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 24 C -0.13 -1.84 10.05 22.27 0.22 -1.62 16 25 C -0.13 -1.83 8.12 22.27 0.18 -1.65 16 26 C -0.11 -0.88 6.84 31.12 0.21 -0.67 16 27 C -0.14 -1.10 7.72 31.12 0.24 -0.86 16 28 C -0.13 -1.28 6.22 31.21 0.19 -1.08 16 29 H 0.27 15.57 8.31 -92.71 -0.77 14.79 16 30 H 0.03 1.12 7.20 -2.39 -0.02 1.10 16 31 H 0.02 1.03 7.57 -2.38 -0.02 1.01 16 32 H 0.06 2.28 8.14 -2.39 -0.02 2.27 16 33 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.42 10.74 7.94 -92.71 -0.74 10.00 16 37 H 0.42 7.88 6.60 -92.71 -0.61 7.27 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.25 7.32 -2.38 -0.02 1.23 16 40 H 0.13 1.39 8.01 -2.91 -0.02 1.36 16 41 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 42 H 0.13 1.40 8.06 -2.91 -0.02 1.37 16 43 H 0.13 1.54 8.06 -2.92 -0.02 1.51 16 44 H 0.13 1.58 7.05 -2.91 -0.02 1.56 16 45 H 0.09 0.70 8.09 -2.39 -0.02 0.68 16 46 H 0.08 0.55 8.10 -2.39 -0.02 0.53 16 47 H 0.08 0.68 7.61 -2.39 -0.02 0.66 16 48 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 49 H 0.07 0.75 8.11 -2.39 -0.02 0.73 16 50 H 0.09 0.84 7.48 -2.38 -0.02 0.82 16 Total: -1.00 -70.27 410.69 1.43 -68.83 By element: Atomic # 1 Polarization: 25.91 SS G_CDS: -0.46 Total: 25.45 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 4.87 Total: -10.48 kcal Atomic # 7 Polarization: -92.10 SS G_CDS: -4.76 Total: -96.86 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.11 Total: -32.81 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 1.88 Total: 45.86 kcal Total: -70.27 1.43 -68.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000284670530.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.355 kcal (2) G-P(sol) polarization free energy of solvation -70.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds