Wall clock time and date at job start Wed Apr 1 2020 03:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 120.00069 * 2 1 4 4 H 1.48498 * 109.47220 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47468 * 300.00240 * 3 2 1 6 6 H 1.48500 * 109.47062 * 60.00570 * 3 2 1 7 7 C 1.37879 * 120.00096 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00272 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99843 * 359.97438 * 7 2 1 10 10 C 1.52993 * 109.47233 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47442 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47622 * 179.97438 * 11 10 9 13 13 C 1.34772 * 120.00494 * 179.97438 * 12 11 10 14 14 O 1.21347 * 119.99994 * 0.02562 * 13 12 11 15 15 C 1.49443 * 120.00212 * 180.27760 * 13 12 11 16 16 O 1.21348 * 120.00232 * 359.72918 * 15 13 12 17 17 N 1.34775 * 120.00226 * 179.72961 * 15 13 12 18 18 C 1.47424 * 125.64565 * 354.95069 * 17 15 13 19 19 C 1.54695 * 104.94071 * 204.07444 * 18 17 15 20 20 C 1.55159 * 101.67657 * 323.27547 * 19 18 17 21 21 C 1.47021 * 125.65291 * 175.25927 * 17 15 13 22 22 H 1.08996 * 109.88484 * 59.32958 * 21 17 15 23 23 C 1.53005 * 109.88207 * 298.32072 * 21 17 15 24 24 C 1.50697 * 109.47345 * 174.82120 * 23 21 17 25 25 C 1.38238 * 119.99607 * 275.15239 * 24 23 21 26 26 C 1.38236 * 119.99873 * 179.80984 * 25 24 23 27 27 C 1.38237 * 119.99943 * 0.39401 * 26 25 24 28 28 C 1.38241 * 119.99926 * 359.86106 * 27 26 25 29 29 C 1.38229 * 120.00457 * 95.42533 * 24 23 21 30 30 H 0.97003 * 119.99524 * 359.97438 * 1 2 3 31 31 H 1.08999 * 109.47085 * 60.00222 * 9 7 2 32 32 H 1.09005 * 109.47023 * 300.00700 * 9 7 2 33 33 H 1.08999 * 109.47403 * 59.99805 * 10 9 7 34 34 H 1.09005 * 109.47188 * 299.99987 * 10 9 7 35 35 H 1.09007 * 109.47004 * 59.99749 * 11 10 9 36 36 H 1.08996 * 109.47334 * 299.99955 * 11 10 9 37 37 H 0.97003 * 119.99562 * 0.02562 * 12 11 10 38 38 H 1.08998 * 110.36928 * 323.00402 * 18 17 15 39 39 H 1.09004 * 110.36942 * 85.32878 * 18 17 15 40 40 H 1.09000 * 111.10456 * 205.10922 * 19 18 17 41 41 H 1.08997 * 110.84987 * 81.33868 * 19 18 17 42 42 H 1.09000 * 110.71941 * 276.97316 * 20 19 18 43 43 H 1.09004 * 110.71852 * 153.69935 * 20 19 18 44 44 H 1.08998 * 109.46865 * 294.82403 * 23 21 17 45 45 H 1.09000 * 109.46832 * 54.81884 * 23 21 17 46 46 H 1.07998 * 120.00517 * 0.02562 * 25 24 23 47 47 H 1.07997 * 120.00328 * 180.23287 * 26 25 24 48 48 H 1.08002 * 120.00335 * 179.83440 * 27 26 25 49 49 H 1.07997 * 119.99867 * 179.97438 * 28 27 26 50 50 H 1.08002 * 119.99509 * 359.97438 * 29 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4803 -4.9871 -0.0012 12 7 2.4322 -6.1006 -0.0018 13 6 1.9830 -7.3713 -0.0019 14 8 0.7900 -7.5931 -0.0020 15 6 2.9541 -8.5072 0.0037 16 8 4.1471 -8.2855 0.0034 17 7 2.5049 -9.7779 0.0091 18 6 1.0933 -10.1896 0.1156 19 6 1.1389 -11.6261 0.6879 20 6 2.3988 -12.2025 -0.0106 21 6 3.3417 -10.9831 -0.0837 22 1 4.0489 -11.0081 0.7453 23 6 4.0987 -10.9897 -1.4134 24 6 5.0477 -12.1599 -1.4453 25 6 6.3038 -12.0467 -0.8793 26 6 7.1729 -13.1214 -0.9051 27 6 6.7890 -14.3066 -1.5042 28 6 5.5348 -14.4180 -2.0749 29 6 4.6644 -13.3446 -2.0456 30 1 -0.4849 0.8401 0.0004 31 1 0.6241 -2.5567 -0.8903 32 1 0.6246 -2.5570 0.8897 33 1 2.8719 -3.6044 0.8894 34 1 2.8719 -3.6044 -0.8906 35 1 0.8539 -5.0446 -0.8914 36 1 0.8533 -5.0451 0.8885 37 1 3.3859 -5.9234 -0.0014 38 1 0.5551 -9.5275 0.7938 39 1 0.6231 -10.1904 -0.8678 40 1 0.2470 -12.1877 0.4102 41 1 1.2658 -11.6086 1.7703 42 1 2.1551 -12.5621 -1.0103 43 1 2.8424 -12.9976 0.5889 44 1 3.3882 -11.0755 -2.2355 45 1 4.6620 -10.0622 -1.5154 46 1 6.6049 -11.1199 -0.4138 47 1 8.1528 -13.0343 -0.4596 48 1 7.4690 -15.1454 -1.5267 49 1 5.2350 -15.3438 -2.5432 50 1 3.6845 -13.4316 -2.4914 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286713061.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:34:16 Heat of formation + Delta-G solvation = -59.660966 kcal Electronic energy + Delta-G solvation = -28979.432493 eV Core-core repulsion = 24970.736008 eV Total energy + Delta-G solvation = -4008.696484 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.02154 -39.74783 -38.80450 -37.66856 -35.61911 -33.70899 -33.34594 -31.91390 -31.24537 -31.20685 -29.64992 -27.28075 -26.13225 -25.11697 -23.24411 -22.97245 -22.01051 -21.78374 -20.91774 -20.59565 -19.39341 -17.69581 -17.40225 -17.00316 -16.44567 -16.34798 -15.75379 -15.48162 -15.40437 -15.23137 -14.63978 -14.47593 -14.39240 -13.94527 -13.83088 -13.70262 -13.65917 -13.47510 -13.08545 -12.94223 -12.71474 -12.32747 -12.20890 -11.91863 -11.81528 -11.77180 -11.46762 -11.37017 -11.26673 -11.10122 -11.03343 -10.93349 -10.76576 -10.58204 -9.91174 -9.71553 -9.33614 -9.26569 -9.23251 -9.11977 -8.99076 -8.81814 -8.38887 -6.03509 -4.06373 0.99739 1.07100 1.43198 2.22244 3.21234 3.29721 3.37278 3.39725 3.41775 3.51201 4.15936 4.19688 4.41509 4.43774 4.50666 4.53623 4.58954 4.67842 4.80565 4.88215 4.94680 4.97045 5.17665 5.20984 5.32629 5.37237 5.39608 5.46933 5.55037 5.58809 5.61180 5.66264 5.68522 5.74177 5.77471 5.86320 5.98491 6.07347 6.13733 6.19095 6.28739 6.32015 6.53454 6.67179 6.70837 6.94566 6.99287 7.30591 7.61204 7.70644 7.72578 7.95000 8.06397 8.36320 9.00340 9.58089 11.07762 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019704 B = 0.001729 C = 0.001617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.671507 B =16193.345949 C =17316.317948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.123 4.123 11 C 0.115 3.885 12 N -0.692 5.692 13 C 0.502 3.498 14 O -0.522 6.522 15 C 0.522 3.478 16 O -0.520 6.520 17 N -0.591 5.591 18 C 0.101 3.899 19 C -0.138 4.138 20 C -0.125 4.125 21 C 0.144 3.856 22 H 0.082 0.918 23 C -0.095 4.095 24 C -0.074 4.074 25 C -0.113 4.113 26 C -0.118 4.118 27 C -0.126 4.126 28 C -0.120 4.120 29 C -0.115 4.115 30 H 0.260 0.740 31 H 0.020 0.980 32 H 0.020 0.980 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.411 0.589 38 H 0.099 0.901 39 H 0.074 0.926 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.087 0.913 46 H 0.124 0.876 47 H 0.121 0.879 48 H 0.119 0.881 49 H 0.120 0.880 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.098 -32.919 -1.526 33.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.075 0.925 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.007 4.007 12 N -0.343 5.343 13 C 0.282 3.718 14 O -0.399 6.399 15 C 0.306 3.694 16 O -0.396 6.396 17 N -0.325 5.325 18 C -0.021 4.021 19 C -0.176 4.176 20 C -0.163 4.163 21 C 0.041 3.959 22 H 0.100 0.900 23 C -0.133 4.133 24 C -0.075 4.075 25 C -0.131 4.131 26 C -0.136 4.136 27 C -0.144 4.144 28 C -0.138 4.138 29 C -0.133 4.133 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.038 0.962 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.246 0.754 38 H 0.117 0.883 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.095 0.905 42 H 0.098 0.902 43 H 0.102 0.898 44 H 0.094 0.906 45 H 0.106 0.894 46 H 0.142 0.858 47 H 0.139 0.861 48 H 0.137 0.863 49 H 0.138 0.862 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 7.744 -32.711 -1.525 33.649 hybrid contribution 0.893 1.044 -0.053 1.375 sum 8.637 -31.667 -1.578 32.862 Atomic orbital electron populations 1.69976 1.06051 1.26592 1.50655 1.25028 0.94867 0.99332 0.95240 0.86518 0.80088 0.83693 0.77593 1.19733 1.21000 1.20994 1.21243 0.93102 0.90877 1.50832 0.92511 1.19038 0.93807 0.90806 0.97718 1.21926 0.99878 0.92962 1.01311 1.21833 0.91711 0.84692 1.02482 1.46065 1.12209 1.04916 1.71153 1.19919 0.88468 0.84387 0.79045 1.90723 1.16046 1.84397 1.48718 1.20049 0.88584 0.82983 0.77817 1.90747 1.16218 1.84077 1.48554 1.48353 1.09405 1.04219 1.70549 1.22560 0.81477 0.95593 1.02514 1.22847 0.98494 0.95416 1.00821 1.22738 0.95295 0.96302 1.01992 1.21650 0.92834 0.83754 0.97672 0.90016 1.20991 0.97569 0.97391 0.97324 1.19732 0.94769 0.94876 0.98133 1.21153 0.93503 0.99067 0.99381 1.21171 0.99638 0.93302 0.99500 1.21161 0.96618 0.97826 0.98770 1.21136 0.94203 0.98659 0.99826 1.21069 0.99635 0.92792 0.99814 0.92983 0.96184 0.96190 0.92432 0.92443 0.91126 0.91119 0.75354 0.88318 0.90746 0.89437 0.90506 0.90176 0.89830 0.90593 0.89418 0.85821 0.86090 0.86261 0.86164 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.52 -14.54 9.11 -34.44 -0.31 -14.86 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 10 C -0.12 -2.39 5.27 -26.74 -0.14 -2.53 16 11 C 0.11 1.96 5.67 -4.04 -0.02 1.94 16 12 N -0.69 -10.44 5.55 -60.74 -0.34 -10.78 16 13 C 0.50 7.57 7.85 -11.59 -0.09 7.48 16 14 O -0.52 -8.62 13.91 5.50 0.08 -8.55 16 15 C 0.52 7.14 7.64 -11.59 -0.09 7.05 16 16 O -0.52 -7.86 15.64 5.50 0.09 -7.78 16 17 N -0.59 -6.50 3.07 -163.66 -0.50 -7.01 16 18 C 0.10 0.94 5.88 -2.64 -0.02 0.92 16 19 C -0.14 -0.87 7.07 -24.70 -0.17 -1.05 16 20 C -0.13 -0.78 5.70 -24.90 -0.14 -0.92 16 21 C 0.14 1.28 2.86 -66.95 -0.19 1.08 16 22 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 23 C -0.09 -0.85 4.83 -27.88 -0.13 -0.98 16 24 C -0.07 -0.62 4.80 -104.63 -0.50 -1.12 16 25 C -0.11 -0.96 9.72 -39.58 -0.38 -1.35 16 26 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 27 C -0.13 -0.86 10.05 -39.58 -0.40 -1.25 16 28 C -0.12 -0.80 10.05 -39.58 -0.40 -1.20 16 29 C -0.12 -0.82 9.06 -39.59 -0.36 -1.18 16 30 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 31 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 36 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 37 H 0.41 5.71 7.94 -40.82 -0.32 5.38 16 38 H 0.10 1.08 6.48 -51.93 -0.34 0.74 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.43 7.20 -51.93 -0.37 0.06 16 43 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.08 0.64 7.92 -51.93 -0.41 0.22 16 45 H 0.09 0.98 6.85 -51.93 -0.36 0.62 16 46 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 47 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 48 H 0.12 0.58 8.06 -52.49 -0.42 0.16 16 49 H 0.12 0.56 8.06 -52.49 -0.42 0.14 16 50 H 0.12 0.67 7.72 -52.49 -0.41 0.26 16 LS Contribution 410.31 15.07 6.18 6.18 Total: -1.00 -32.00 410.31 -10.86 -42.85 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -8.09 Total: 1.75 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -3.99 Total: -7.27 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: -0.10 Total: -43.67 kcal Atomic # 8 Polarization: -16.49 SS G_CDS: 0.16 Total: -16.33 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.00 -10.86 -42.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286713061.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.807 kcal (2) G-P(sol) polarization free energy of solvation -31.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds