Wall clock time and date at job start Wed Apr 1 2020 02:40:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00459 * 2 1 4 4 H 1.48500 * 109.47279 * 239.99633 * 3 2 1 5 5 H 1.48510 * 109.46792 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47624 * 119.98916 * 3 2 1 7 7 C 1.38816 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99677 * 195.83920 * 7 2 1 9 9 N 1.36938 * 120.00068 * 15.84965 * 7 2 1 10 10 C 1.46921 * 120.62987 * 208.39808 * 9 7 2 11 11 C 1.53190 * 108.77659 * 233.58484 * 10 9 7 12 12 C 1.53045 * 109.31182 * 305.36458 * 11 10 9 13 13 C 1.52992 * 109.46008 * 181.38541 * 12 11 10 14 14 N 1.46505 * 109.47452 * 174.97389 * 13 12 11 15 15 C 1.34775 * 120.00058 * 179.97438 * 14 13 12 16 16 O 1.21276 * 119.99949 * 5.00146 * 15 14 13 17 17 C 1.50699 * 119.99672 * 185.00045 * 15 14 13 18 18 H 1.09000 * 109.40558 * 23.96866 * 17 15 14 19 19 C 1.53068 * 109.43569 * 143.86479 * 17 15 14 20 20 C 1.53403 * 108.29838 * 168.27527 * 19 17 15 21 21 O 1.42822 * 108.38495 * 295.29715 * 20 19 17 22 22 C 1.35838 * 117.86910 * 49.16589 * 21 20 19 23 23 C 1.39140 * 118.50716 * 162.83612 * 22 21 20 24 24 C 1.37971 * 120.21838 * 179.82283 * 23 22 21 25 25 C 1.38292 * 119.95636 * 359.97438 * 24 23 22 26 26 C 1.38105 * 119.98243 * 0.07061 * 25 24 23 27 27 C 1.38377 * 121.80185 * 342.78065 * 22 21 20 28 28 C 1.53041 * 109.52501 * 61.37399 * 12 11 10 29 29 C 1.46928 * 120.63051 * 28.37406 * 9 7 2 30 30 H 0.97000 * 119.99685 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.58241 * 113.79678 * 10 9 7 32 32 H 1.08997 * 109.58665 * 353.37611 * 10 9 7 33 33 H 1.08999 * 109.49593 * 185.41600 * 11 10 9 34 34 H 1.08997 * 109.52414 * 65.33523 * 11 10 9 35 35 H 1.08996 * 109.46130 * 301.35751 * 12 11 10 36 36 H 1.09004 * 109.47368 * 54.97447 * 13 12 11 37 37 H 1.09006 * 109.47256 * 294.97305 * 13 12 11 38 38 H 0.97001 * 119.99355 * 359.97438 * 14 13 12 39 39 H 1.09003 * 109.69446 * 287.97609 * 19 17 15 40 40 H 1.08995 * 109.70005 * 48.53499 * 19 17 15 41 41 H 1.09000 * 109.68211 * 175.56786 * 20 19 17 42 42 H 1.09004 * 109.68496 * 55.02039 * 20 19 17 43 43 H 1.07995 * 119.89311 * 359.84659 * 23 22 21 44 44 H 1.07998 * 120.02346 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.00793 * 180.02562 * 25 24 23 46 46 H 1.08005 * 119.83628 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.49693 * 58.57807 * 28 12 11 48 48 H 1.08999 * 109.49443 * 178.67540 * 28 12 11 49 49 H 1.08994 * 109.58504 * 246.20499 * 29 9 7 50 50 H 1.09000 * 109.58662 * 6.62994 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0594 -1.2199 0.2558 9 7 1.3645 -2.3657 -0.3228 10 6 1.8141 -3.6501 0.2310 11 6 2.0516 -4.6288 -0.9234 12 6 0.7848 -4.7213 -1.7772 13 6 1.0066 -5.7240 -2.9113 14 7 -0.2421 -5.9029 -3.6564 15 6 -0.2850 -6.7457 -4.7072 16 8 0.6826 -7.4238 -4.9806 17 6 -1.5354 -6.8456 -5.5423 18 1 -2.1092 -5.9237 -5.4470 19 6 -1.1527 -7.0581 -7.0090 20 6 -2.4171 -7.4483 -7.7851 21 8 -2.8748 -8.7096 -7.2956 22 6 -2.9911 -8.8646 -5.9511 23 6 -3.7594 -9.9194 -5.4682 24 6 -3.8985 -10.1119 -4.1091 25 6 -3.2724 -9.2548 -3.2226 26 6 -2.5098 -8.2063 -3.6983 27 6 -2.3684 -8.0068 -5.0615 28 6 0.4644 -3.3463 -2.3679 29 6 0.2086 -2.3532 -1.2298 30 1 -0.4850 0.8401 -0.0004 31 1 1.0485 -4.0490 0.8966 32 1 2.7422 -3.5049 0.7837 33 1 2.2925 -5.6131 -0.5221 34 1 2.8791 -4.2737 -1.5375 35 1 -0.0478 -5.0531 -1.1569 36 1 1.3210 -6.6807 -2.4941 37 1 1.7794 -5.3486 -3.5822 38 1 -1.0379 -5.4146 -3.3933 39 1 -0.7403 -6.1359 -7.4184 40 1 -0.4140 -7.8560 -7.0841 41 1 -2.1858 -7.5287 -8.8472 42 1 -3.1888 -6.6936 -7.6331 43 1 -4.2481 -10.5899 -6.1595 44 1 -4.4952 -10.9319 -3.7378 45 1 -3.3804 -9.4050 -2.1585 46 1 -2.0216 -7.5385 -3.0038 47 1 1.3069 -3.0029 -2.9681 48 1 -0.4244 -3.4178 -2.9948 49 1 -0.6878 -2.6464 -0.6833 50 1 0.0775 -1.3523 -1.6409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332110291.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:42 Heat of formation + Delta-G solvation = -41.066949 kcal Electronic energy + Delta-G solvation = -30249.247856 eV Core-core repulsion = 26241.357669 eV Total energy + Delta-G solvation = -4007.890187 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.32575 -39.53316 -37.86239 -37.77007 -35.03468 -34.48936 -32.89878 -31.01997 -30.62432 -30.49275 -29.88332 -27.55467 -26.10037 -24.23828 -23.80192 -22.85865 -22.27940 -21.22675 -20.85093 -19.98748 -19.13052 -18.24625 -17.24971 -17.00787 -16.72180 -16.38741 -15.94479 -15.23077 -15.09133 -14.86257 -14.48604 -14.24495 -14.06171 -13.96119 -13.65040 -13.56281 -13.52706 -13.36008 -13.03119 -12.75938 -12.42528 -12.34253 -12.22027 -11.90146 -11.78994 -11.42683 -11.34436 -11.18136 -11.00043 -10.92903 -10.73759 -10.57189 -10.27931 -10.27178 -10.01728 -9.90699 -9.59379 -9.48031 -9.08108 -9.02700 -8.49578 -8.43333 -6.69018 -5.81476 -3.24522 0.99346 1.16070 2.50193 2.93836 3.11034 3.36315 3.41880 3.43330 3.51834 4.17306 4.29770 4.37682 4.47318 4.57293 4.79239 4.81387 4.83406 4.94692 5.07582 5.13198 5.18511 5.21117 5.21391 5.25664 5.33134 5.39986 5.53606 5.55788 5.69536 5.79086 5.83050 5.88751 5.99575 6.01864 6.11373 6.13869 6.25279 6.26648 6.37389 6.48466 6.49322 6.53497 6.63838 6.72654 6.78787 6.95604 7.13662 7.32730 7.44141 7.62015 7.76685 8.12938 8.43205 9.19335 9.82464 10.39154 11.26969 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.002218 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.746346 B =12619.155472 C =12932.697899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.282 1.282 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.146 3.854 11 C -0.124 4.124 12 C -0.090 4.090 13 C 0.123 3.877 14 N -0.723 5.723 15 C 0.524 3.476 16 O -0.536 6.536 17 C -0.064 4.064 18 H 0.103 0.897 19 C -0.147 4.147 20 C 0.064 3.936 21 O -0.316 6.316 22 C 0.141 3.859 23 C -0.151 4.151 24 C -0.084 4.084 25 C -0.149 4.149 26 C -0.081 4.081 27 C -0.149 4.149 28 C -0.135 4.135 29 C 0.171 3.829 30 H 0.254 0.746 31 H 0.017 0.983 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.402 0.598 39 H 0.090 0.910 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.067 0.933 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.125 0.875 47 H 0.056 0.944 48 H 0.045 0.955 49 H 0.016 0.984 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.644 -17.380 -12.466 23.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.382 4.382 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.164 4.164 12 C -0.109 4.109 13 C 0.000 4.000 14 N -0.375 5.375 15 C 0.309 3.691 16 O -0.413 6.413 17 C -0.086 4.086 18 H 0.120 0.880 19 C -0.185 4.185 20 C -0.011 4.011 21 O -0.230 6.230 22 C 0.096 3.904 23 C -0.169 4.169 24 C -0.102 4.102 25 C -0.167 4.167 26 C -0.099 4.099 27 C -0.151 4.151 28 C -0.174 4.174 29 C 0.045 3.955 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.237 0.763 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.085 0.915 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.075 0.925 48 H 0.063 0.937 49 H 0.034 0.966 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.060 -17.812 -12.794 23.364 hybrid contribution 0.134 1.416 0.293 1.453 sum -7.926 -16.395 -12.501 22.088 Atomic orbital electron populations 1.70003 1.05244 1.25572 1.54109 1.25053 0.95325 0.98393 1.00905 0.86364 0.78898 0.83315 0.78151 1.21051 1.21632 1.20862 1.19156 0.92197 0.84678 1.42127 0.91776 1.44042 1.34811 1.01763 1.50912 1.20886 0.97650 0.86896 0.92620 1.21984 0.96459 0.99231 0.98749 1.21312 0.99366 0.95108 0.95153 1.21590 0.85458 0.99299 0.93674 1.46203 1.14647 1.45144 1.31474 1.20166 0.88790 0.79361 0.80776 1.90693 1.37302 1.43232 1.70024 1.20179 0.94354 0.98183 0.95844 0.87950 1.22169 0.98906 1.04765 0.92676 1.23005 0.95224 0.83946 0.98929 1.85985 1.82370 1.35738 1.18859 1.18626 0.94608 0.94914 0.82255 1.20589 1.01312 0.99129 0.95897 1.20971 0.98324 0.98732 0.92194 1.21039 0.99531 0.96073 1.00075 1.21022 0.97344 0.97716 0.93854 1.19350 1.02396 0.99267 0.94064 1.22262 0.99917 0.95386 0.99860 1.20772 0.88463 0.98052 0.88201 0.93608 0.96518 0.92734 0.92950 0.92082 0.91314 0.91859 0.91624 0.76320 0.89184 0.88712 0.86962 0.91470 0.85108 0.85270 0.85574 0.85673 0.92521 0.93667 0.96561 0.89424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.75 11.14 55.49 0.62 -25.14 16 2 C 0.00 0.04 4.94 -17.43 -0.09 -0.04 16 3 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.25 -6.80 9.59 -15.06 -0.14 -6.95 16 8 H 0.06 1.71 7.88 -52.49 -0.41 1.29 16 9 N -0.59 -14.41 2.99 -172.32 -0.52 -14.93 16 10 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 11 C -0.12 -2.04 5.36 -26.61 -0.14 -2.18 16 12 C -0.09 -1.37 2.19 -90.58 -0.20 -1.56 16 13 C 0.12 1.68 5.07 -4.04 -0.02 1.66 16 14 N -0.72 -8.67 4.58 -60.29 -0.28 -8.94 16 15 C 0.52 6.82 5.78 -10.99 -0.06 6.76 16 16 O -0.54 -9.03 16.08 5.56 0.09 -8.94 16 17 C -0.06 -0.66 2.70 -92.85 -0.25 -0.91 16 18 H 0.10 0.84 8.12 -51.93 -0.42 0.42 16 19 C -0.15 -1.37 5.35 -26.49 -0.14 -1.51 16 20 C 0.06 0.49 7.03 37.37 0.26 0.75 16 21 O -0.32 -3.33 10.27 -19.23 -0.20 -3.53 16 22 C 0.14 1.57 6.47 -39.20 -0.25 1.31 16 23 C -0.15 -1.47 9.94 -39.34 -0.39 -1.86 16 24 C -0.08 -0.73 10.04 -39.66 -0.40 -1.13 16 25 C -0.15 -1.41 10.04 -39.61 -0.40 -1.81 16 26 C -0.08 -0.87 9.10 -39.53 -0.36 -1.23 16 27 C -0.15 -1.66 5.42 -104.44 -0.57 -2.23 16 28 C -0.13 -2.35 5.25 -26.61 -0.14 -2.49 16 29 C 0.17 3.87 5.30 -3.71 -0.02 3.85 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 31 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 1.09 7.93 -51.93 -0.41 0.68 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.40 4.11 7.62 -40.82 -0.31 3.80 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.09 7.46 -51.93 -0.39 0.70 16 41 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.96 8.06 -52.49 -0.42 0.54 16 46 H 0.13 1.28 6.80 -52.48 -0.36 0.93 16 47 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.04 0.68 7.15 -51.93 -0.37 0.31 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.09 2.26 6.04 -51.93 -0.31 1.94 16 LS Contribution 393.11 15.07 5.92 5.92 Total: -1.00 -32.28 393.11 -10.76 -43.05 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -8.04 Total: 2.74 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: -3.34 Total: -6.65 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -0.17 Total: -49.01 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: -0.11 Total: -12.47 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.28 -10.76 -43.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332110291.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.979 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds