Wall clock time and date at job start Wed Apr 1 2020 02:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86796 * 120.00459 * 2 1 4 4 H 1.48500 * 109.47279 * 239.99633 * 3 2 1 5 5 H 1.48510 * 109.46792 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47624 * 119.98916 * 3 2 1 7 7 C 1.38816 * 119.99689 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99677 * 195.83920 * 7 2 1 9 9 N 1.36938 * 120.00068 * 15.84965 * 7 2 1 10 10 C 1.46921 * 120.62987 * 208.39808 * 9 7 2 11 11 C 1.53190 * 108.77659 * 233.58484 * 10 9 7 12 12 C 1.53045 * 109.31182 * 305.36458 * 11 10 9 13 13 C 1.52992 * 109.46008 * 181.38541 * 12 11 10 14 14 N 1.46505 * 109.47452 * 174.97389 * 13 12 11 15 15 C 1.34775 * 120.00058 * 179.97438 * 14 13 12 16 16 O 1.21276 * 119.99949 * 5.00146 * 15 14 13 17 17 C 1.50699 * 119.99672 * 185.00045 * 15 14 13 18 18 H 1.09000 * 109.40558 * 23.96866 * 17 15 14 19 19 C 1.53068 * 109.43569 * 143.86479 * 17 15 14 20 20 C 1.53403 * 108.29838 * 168.27527 * 19 17 15 21 21 O 1.42822 * 108.38495 * 295.29715 * 20 19 17 22 22 C 1.35838 * 117.86910 * 49.16589 * 21 20 19 23 23 C 1.39140 * 118.50716 * 162.83612 * 22 21 20 24 24 C 1.37971 * 120.21838 * 179.82283 * 23 22 21 25 25 C 1.38292 * 119.95636 * 359.97438 * 24 23 22 26 26 C 1.38105 * 119.98243 * 0.07061 * 25 24 23 27 27 C 1.38377 * 121.80185 * 342.78065 * 22 21 20 28 28 C 1.53041 * 109.52501 * 61.37399 * 12 11 10 29 29 C 1.46928 * 120.63051 * 28.37406 * 9 7 2 30 30 H 0.97000 * 119.99685 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.58241 * 113.79678 * 10 9 7 32 32 H 1.08997 * 109.58665 * 353.37611 * 10 9 7 33 33 H 1.08999 * 109.49593 * 185.41600 * 11 10 9 34 34 H 1.08997 * 109.52414 * 65.33523 * 11 10 9 35 35 H 1.08996 * 109.46130 * 301.35751 * 12 11 10 36 36 H 1.09004 * 109.47368 * 54.97447 * 13 12 11 37 37 H 1.09006 * 109.47256 * 294.97305 * 13 12 11 38 38 H 0.97001 * 119.99355 * 359.97438 * 14 13 12 39 39 H 1.09003 * 109.69446 * 287.97609 * 19 17 15 40 40 H 1.08995 * 109.70005 * 48.53499 * 19 17 15 41 41 H 1.09000 * 109.68211 * 175.56786 * 20 19 17 42 42 H 1.09004 * 109.68496 * 55.02039 * 20 19 17 43 43 H 1.07995 * 119.89311 * 359.84659 * 23 22 21 44 44 H 1.07998 * 120.02346 * 180.02562 * 24 23 22 45 45 H 1.08002 * 120.00793 * 180.02562 * 25 24 23 46 46 H 1.08005 * 119.83628 * 180.02562 * 26 25 24 47 47 H 1.08995 * 109.49693 * 58.57807 * 28 12 11 48 48 H 1.08999 * 109.49443 * 178.67540 * 28 12 11 49 49 H 1.08994 * 109.58504 * 246.20499 * 29 9 7 50 50 H 1.09000 * 109.58662 * 6.62994 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1041 1.6962 -1.2124 5 1 1.2852 2.7464 -0.0006 6 1 3.1038 1.6964 1.2126 7 6 2.0102 -1.2022 0.0005 8 1 3.0594 -1.2199 0.2558 9 7 1.3645 -2.3657 -0.3228 10 6 1.8141 -3.6501 0.2310 11 6 2.0516 -4.6288 -0.9234 12 6 0.7848 -4.7213 -1.7772 13 6 1.0066 -5.7240 -2.9113 14 7 -0.2421 -5.9029 -3.6564 15 6 -0.2850 -6.7457 -4.7072 16 8 0.6826 -7.4238 -4.9806 17 6 -1.5354 -6.8456 -5.5423 18 1 -2.1092 -5.9237 -5.4470 19 6 -1.1527 -7.0581 -7.0090 20 6 -2.4171 -7.4483 -7.7851 21 8 -2.8748 -8.7096 -7.2956 22 6 -2.9911 -8.8646 -5.9511 23 6 -3.7594 -9.9194 -5.4682 24 6 -3.8985 -10.1119 -4.1091 25 6 -3.2724 -9.2548 -3.2226 26 6 -2.5098 -8.2063 -3.6983 27 6 -2.3684 -8.0068 -5.0615 28 6 0.4644 -3.3463 -2.3679 29 6 0.2086 -2.3532 -1.2298 30 1 -0.4850 0.8401 -0.0004 31 1 1.0485 -4.0490 0.8966 32 1 2.7422 -3.5049 0.7837 33 1 2.2925 -5.6131 -0.5221 34 1 2.8791 -4.2737 -1.5375 35 1 -0.0478 -5.0531 -1.1569 36 1 1.3210 -6.6807 -2.4941 37 1 1.7794 -5.3486 -3.5822 38 1 -1.0379 -5.4146 -3.3933 39 1 -0.7403 -6.1359 -7.4184 40 1 -0.4140 -7.8560 -7.0841 41 1 -2.1858 -7.5287 -8.8472 42 1 -3.1888 -6.6936 -7.6331 43 1 -4.2481 -10.5899 -6.1595 44 1 -4.4952 -10.9319 -3.7378 45 1 -3.3804 -9.4050 -2.1585 46 1 -2.0216 -7.5385 -3.0038 47 1 1.3069 -3.0029 -2.9681 48 1 -0.4244 -3.4178 -2.9948 49 1 -0.6878 -2.6464 -0.6833 50 1 0.0775 -1.3523 -1.6409 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332110291.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:41 Heat of formation + Delta-G solvation = -59.691287 kcal Electronic energy + Delta-G solvation = -30250.055468 eV Core-core repulsion = 26241.357669 eV Total energy + Delta-G solvation = -4008.697799 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.11573 -40.54686 -39.33114 -38.46129 -36.44987 -35.32327 -34.49358 -32.41319 -31.61418 -31.50981 -31.20728 -28.82783 -27.25090 -25.63681 -24.71312 -23.88105 -23.62106 -22.64161 -21.86919 -20.92287 -20.54543 -19.02984 -18.71705 -18.05541 -17.74572 -17.15852 -16.95474 -16.80681 -16.13855 -15.93355 -15.70018 -15.32980 -15.29465 -15.06173 -14.96524 -14.80677 -14.61386 -14.30198 -14.20521 -13.93589 -13.83982 -13.46270 -13.33967 -13.07509 -12.93418 -12.81514 -12.55134 -12.50002 -12.32772 -12.08062 -11.97551 -11.85473 -11.84404 -11.65163 -11.61043 -11.27129 -11.13535 -10.89071 -10.52750 -10.12850 -9.81226 -9.16324 -8.65534 -7.86914 -5.32359 0.26806 0.42558 1.46456 1.48288 1.50039 1.54925 2.08535 2.35687 2.51257 2.77490 3.27435 3.41167 3.55704 3.66184 3.71756 3.80769 3.85641 3.95499 4.05904 4.09169 4.12611 4.19919 4.35377 4.49296 4.50357 4.52475 4.52927 4.54152 4.64202 4.68395 4.73809 4.77846 4.89379 4.93254 4.99273 5.04068 5.06009 5.17186 5.24684 5.28672 5.29468 5.38912 5.42179 5.42323 5.55859 5.56411 5.66713 5.80705 5.82014 6.40734 6.43455 6.46536 7.13955 7.16860 7.88785 8.39105 9.18767 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.018529 B = 0.002218 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.746346 B =12619.155472 C =12932.697899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.964 3.036 4 H -0.280 1.280 5 H -0.293 1.293 6 H -0.276 1.276 7 C -0.263 4.263 8 H 0.063 0.937 9 N -0.612 5.612 10 C 0.141 3.859 11 C -0.115 4.115 12 C -0.078 4.078 13 C 0.136 3.864 14 N -0.714 5.714 15 C 0.526 3.474 16 O -0.578 6.578 17 C -0.061 4.061 18 H 0.126 0.874 19 C -0.146 4.146 20 C 0.062 3.938 21 O -0.329 6.329 22 C 0.124 3.876 23 C -0.161 4.161 24 C -0.082 4.082 25 C -0.157 4.157 26 C -0.098 4.098 27 C -0.165 4.165 28 C -0.120 4.120 29 C 0.176 3.824 30 H 0.250 0.750 31 H 0.017 0.983 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.412 0.588 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.136 0.864 42 H 0.083 0.917 43 H 0.145 0.855 44 H 0.157 0.843 45 H 0.143 0.857 46 H 0.126 0.874 47 H 0.045 0.955 48 H 0.072 0.928 49 H -0.001 1.001 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.215 -18.460 -13.180 24.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.245 4.245 3 Si 0.793 3.207 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.202 1.202 7 C -0.393 4.393 8 H 0.081 0.919 9 N -0.336 5.336 10 C 0.016 3.984 11 C -0.155 4.155 12 C -0.097 4.097 13 C 0.012 3.988 14 N -0.366 5.366 15 C 0.313 3.687 16 O -0.457 6.457 17 C -0.083 4.083 18 H 0.144 0.856 19 C -0.183 4.183 20 C -0.012 4.012 21 O -0.244 6.244 22 C 0.078 3.922 23 C -0.179 4.179 24 C -0.100 4.100 25 C -0.175 4.175 26 C -0.116 4.116 27 C -0.166 4.166 28 C -0.159 4.159 29 C 0.051 3.949 30 H 0.059 0.941 31 H 0.035 0.965 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.073 0.927 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.249 0.751 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.153 0.847 42 H 0.102 0.898 43 H 0.162 0.838 44 H 0.175 0.825 45 H 0.161 0.839 46 H 0.144 0.856 47 H 0.064 0.936 48 H 0.090 0.910 49 H 0.018 0.982 50 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.636 -18.903 -13.502 24.784 hybrid contribution 0.305 1.699 0.567 1.816 sum -8.331 -17.205 -12.936 23.081 Atomic orbital electron populations 1.70152 1.06488 1.25826 1.55507 1.25764 0.96095 1.01320 1.01356 0.85390 0.77621 0.79475 0.78252 1.20600 1.21928 1.20230 1.19465 0.92431 0.86058 1.41394 0.91941 1.44333 1.35013 1.02483 1.51796 1.21043 0.97254 0.86057 0.94090 1.21855 0.96795 0.99467 0.97362 1.21157 0.99057 0.93994 0.95485 1.21318 0.85935 0.98657 0.92903 1.46109 1.14505 1.44945 1.31056 1.20607 0.89063 0.78418 0.80598 1.90676 1.39031 1.44889 1.71113 1.20231 0.93087 0.99170 0.95763 0.85639 1.22157 0.99145 1.04556 0.92490 1.23238 0.94734 0.83449 0.99777 1.85962 1.82553 1.37173 1.18685 1.18886 0.95250 0.95467 0.82557 1.20907 1.01201 0.99033 0.96765 1.21321 0.97882 0.99056 0.91733 1.21339 0.99135 0.95757 1.01225 1.21178 0.98062 0.98483 0.93851 1.19474 1.02941 0.99804 0.94394 1.22042 1.00701 0.95181 0.97983 1.20605 0.87558 0.97561 0.89221 0.94117 0.96548 0.93056 0.89938 0.92749 0.90438 0.91564 0.92551 0.75055 0.87641 0.91430 0.84671 0.89835 0.83767 0.82509 0.83893 0.85630 0.93648 0.90963 0.98249 0.93033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.36 11.14 21.65 0.24 -54.12 16 2 C -0.05 -2.77 4.94 84.86 0.42 -2.35 16 3 Si 0.96 44.57 29.58 68.60 2.03 46.60 16 4 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 6 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.26 -14.38 9.59 84.03 0.81 -13.57 16 8 H 0.06 3.35 7.88 -2.91 -0.02 3.33 16 9 N -0.61 -30.04 2.99 -699.11 -2.09 -32.13 16 10 C 0.14 5.61 6.52 86.36 0.56 6.17 16 11 C -0.12 -3.57 5.36 30.67 0.16 -3.41 16 12 C -0.08 -2.21 2.19 -10.77 -0.02 -2.23 16 13 C 0.14 3.44 5.07 86.38 0.44 3.87 16 14 N -0.71 -15.78 4.58 -463.06 -2.12 -17.90 16 15 C 0.53 13.08 5.78 87.66 0.51 13.59 16 16 O -0.58 -19.24 16.08 -3.02 -0.05 -19.29 16 17 C -0.06 -1.18 2.70 -12.24 -0.03 -1.22 16 18 H 0.13 1.77 8.12 -2.39 -0.02 1.75 16 19 C -0.15 -2.53 5.35 30.75 0.16 -2.37 16 20 C 0.06 0.85 7.03 72.12 0.51 1.35 16 21 O -0.33 -6.57 10.27 -91.74 -0.94 -7.52 16 22 C 0.12 2.62 6.47 22.52 0.15 2.76 16 23 C -0.16 -2.89 9.94 22.42 0.22 -2.66 16 24 C -0.08 -1.27 10.04 22.22 0.22 -1.04 16 25 C -0.16 -2.70 10.04 22.25 0.22 -2.47 16 26 C -0.10 -1.97 9.10 22.30 0.20 -1.77 16 27 C -0.16 -3.49 5.42 -19.75 -0.11 -3.60 16 28 C -0.12 -4.05 5.25 30.67 0.16 -3.89 16 29 C 0.18 8.07 5.30 86.36 0.46 8.53 16 30 H 0.25 14.12 8.31 -92.71 -0.77 13.35 16 31 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.05 2.03 7.93 -2.39 -0.02 2.01 16 33 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.41 7.44 7.62 -92.71 -0.71 6.73 16 39 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.56 7.46 -2.39 -0.02 1.54 16 41 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.14 2.08 8.06 -2.91 -0.02 2.05 16 44 H 0.16 1.44 8.06 -2.91 -0.02 1.42 16 45 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 46 H 0.13 2.40 6.80 -2.91 -0.02 2.38 16 47 H 0.04 1.64 8.14 -2.39 -0.02 1.63 16 48 H 0.07 2.03 7.15 -2.39 -0.02 2.01 16 49 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 50 H 0.05 2.73 6.04 -2.39 -0.01 2.71 16 Total: -1.00 -71.49 393.11 2.33 -69.16 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.23 Total: 19.51 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: 5.04 Total: -4.29 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -3.97 Total: -104.16 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.99 Total: -26.81 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -71.49 2.33 -69.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332110291.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.465 kcal (2) G-P(sol) polarization free energy of solvation -71.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds