Wall clock time and date at job start Wed Apr 1 2020 02:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47421 * 300.00302 * 3 2 1 6 6 H 1.48503 * 109.47146 * 59.99911 * 3 2 1 7 7 C 1.38808 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99958 * 190.55942 * 7 2 1 9 9 N 1.36940 * 119.99860 * 10.27433 * 7 2 1 10 10 C 1.46925 * 120.62969 * 211.69727 * 9 7 2 11 11 C 1.52760 * 109.00942 * 233.58693 * 10 9 7 12 12 C 1.53039 * 109.38071 * 305.58974 * 11 10 9 13 13 C 1.53008 * 109.45865 * 181.25857 * 12 11 10 14 14 N 1.46509 * 109.47011 * 64.93223 * 13 12 11 15 15 C 1.34768 * 119.99857 * 180.02562 * 14 13 12 16 16 O 1.21284 * 120.00206 * 4.59689 * 15 14 13 17 17 C 1.50703 * 120.00116 * 184.60241 * 15 14 13 18 18 H 1.09002 * 109.43246 * 326.99136 * 17 15 14 19 19 C 1.53071 * 109.43736 * 207.07616 * 17 15 14 20 20 C 1.53411 * 108.28944 * 191.74456 * 19 17 15 21 21 O 1.42823 * 108.37431 * 64.74352 * 20 19 17 22 22 C 1.35844 * 117.86291 * 310.85129 * 21 20 19 23 23 C 1.39149 * 118.49976 * 197.01683 * 22 21 20 24 24 C 1.37968 * 120.21289 * 180.17808 * 23 22 21 25 25 C 1.38292 * 119.96370 * 0.02562 * 24 23 22 26 26 C 1.38105 * 119.97876 * 359.91416 * 25 24 23 27 27 C 1.38316 * 121.79179 * 17.11092 * 22 21 20 28 28 C 1.53031 * 109.53914 * 61.24146 * 12 11 10 29 29 C 1.46920 * 120.63281 * 31.97838 * 9 7 2 30 30 H 0.96999 * 119.99796 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.58799 * 353.42249 * 10 9 7 32 32 H 1.08994 * 109.58986 * 113.84494 * 10 9 7 33 33 H 1.09001 * 109.56749 * 185.54874 * 11 10 9 34 34 H 1.09002 * 109.36223 * 65.50004 * 11 10 9 35 35 H 1.09000 * 109.45019 * 301.21964 * 12 11 10 36 36 H 1.09001 * 109.47247 * 184.92561 * 13 12 11 37 37 H 1.08991 * 109.47037 * 304.93230 * 13 12 11 38 38 H 0.97001 * 119.99453 * 359.97438 * 14 13 12 39 39 H 1.08992 * 109.70085 * 311.44186 * 19 17 15 40 40 H 1.09001 * 109.70040 * 72.04407 * 19 17 15 41 41 H 1.08997 * 109.68486 * 184.47166 * 20 19 17 42 42 H 1.08998 * 109.68349 * 304.98534 * 20 19 17 43 43 H 1.07997 * 119.89099 * 0.15926 * 23 22 21 44 44 H 1.08001 * 120.01793 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.00728 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.83964 * 180.02562 * 26 25 24 47 47 H 1.09010 * 109.49570 * 178.68370 * 28 12 11 48 48 H 1.08998 * 109.53090 * 58.60259 * 28 12 11 49 49 H 1.08997 * 109.59050 * 246.15634 * 29 9 7 50 50 H 1.09008 * 109.58782 * 6.44104 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0765 -1.2101 0.1709 9 7 1.3421 -2.3784 -0.2126 10 6 1.7983 -3.6232 0.4208 11 6 1.9864 -4.6897 -0.6566 12 6 0.6930 -4.8314 -1.4623 13 6 0.8691 -5.9213 -2.5216 14 7 1.0611 -7.2159 -1.8630 15 6 1.2383 -8.3284 -2.6027 16 8 1.3224 -8.2471 -3.8099 17 6 1.3319 -9.6736 -1.9298 18 1 1.8096 -9.5599 -0.9567 19 6 2.1640 -10.6207 -2.7981 20 6 2.0000 -12.0445 -2.2510 21 8 0.6359 -12.4349 -2.4135 22 6 -0.3257 -11.5739 -1.9900 23 6 -1.6162 -12.0595 -1.8027 24 6 -2.6208 -11.2152 -1.3770 25 6 -2.3461 -9.8815 -1.1357 26 6 -1.0662 -9.3963 -1.3192 27 6 -0.0531 -10.2400 -1.7456 28 6 0.3687 -3.5021 -2.1476 29 6 0.1590 -2.4210 -1.0826 30 1 -0.4850 0.8401 -0.0004 31 1 2.7464 -3.4483 0.9293 32 1 1.0526 -3.9618 1.1400 33 1 2.2293 -5.6433 -0.1877 34 1 2.7982 -4.3932 -1.3208 35 1 -0.1234 -5.1038 -0.7933 36 1 -0.0193 -5.9625 -3.1517 37 1 1.7401 -5.6935 -3.1359 38 1 1.0613 -7.2720 -0.8947 39 1 1.8109 -10.5801 -3.8285 40 1 3.2137 -10.3299 -2.7571 41 1 2.6456 -12.7269 -2.8038 42 1 2.2648 -12.0643 -1.1938 43 1 -1.8320 -13.1007 -1.9916 44 1 -3.6212 -11.5956 -1.2323 45 1 -3.1321 -9.2198 -0.8028 46 1 -0.8541 -8.3544 -1.1297 47 1 -0.5399 -3.6103 -2.7400 48 1 1.1953 -3.2164 -2.7982 49 1 -0.7232 -2.6595 -0.4886 50 1 0.0243 -1.4523 -1.5640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332110293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:46 Heat of formation + Delta-G solvation = -40.870832 kcal Electronic energy + Delta-G solvation = -30254.964321 eV Core-core repulsion = 26247.082639 eV Total energy + Delta-G solvation = -4007.881683 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.35398 -39.55575 -37.87363 -37.78133 -35.04885 -34.51592 -32.87137 -31.04755 -30.73887 -30.49070 -29.77425 -27.56276 -26.12524 -24.24382 -23.80958 -22.86968 -22.24774 -21.23139 -20.88762 -20.00221 -19.12779 -18.26609 -17.24832 -17.02897 -16.68448 -16.43680 -15.94452 -15.24240 -15.18066 -14.87546 -14.52498 -14.18397 -14.09723 -13.90863 -13.68019 -13.55847 -13.53418 -13.33460 -13.12242 -12.76857 -12.37245 -12.35418 -12.21744 -11.92344 -11.79249 -11.39622 -11.32835 -11.20275 -10.98108 -10.93174 -10.78198 -10.54630 -10.27652 -10.20916 -10.09012 -9.90602 -9.57521 -9.47246 -9.07916 -9.05601 -8.50634 -8.44785 -6.63180 -5.80515 -3.28696 0.97585 1.14993 2.48905 2.92259 3.08554 3.34953 3.42723 3.44609 3.50258 4.15109 4.26168 4.36050 4.46828 4.55528 4.76851 4.80595 4.82300 4.92419 5.07033 5.11920 5.17562 5.19121 5.20518 5.24401 5.34402 5.40729 5.53050 5.57844 5.69047 5.78536 5.83181 5.89892 5.98604 6.00655 6.10693 6.13050 6.26355 6.30580 6.36989 6.42953 6.47816 6.57956 6.66461 6.73588 6.79248 6.95454 7.12011 7.35362 7.41842 7.67262 7.77515 8.10622 8.46432 9.21035 9.82355 10.40490 11.27679 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.002161 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.750150 B =12954.523278 C =13585.797916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.004 3.996 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.252 4.252 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.127 4.127 12 C -0.089 4.089 13 C 0.122 3.878 14 N -0.724 5.724 15 C 0.523 3.477 16 O -0.535 6.535 17 C -0.064 4.064 18 H 0.103 0.897 19 C -0.147 4.147 20 C 0.064 3.936 21 O -0.316 6.316 22 C 0.141 3.859 23 C -0.151 4.151 24 C -0.084 4.084 25 C -0.149 4.149 26 C -0.083 4.083 27 C -0.152 4.152 28 C -0.133 4.133 29 C 0.173 3.827 30 H 0.253 0.747 31 H 0.052 0.948 32 H 0.016 0.984 33 H 0.046 0.954 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.401 0.599 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.131 0.869 44 H 0.130 0.870 45 H 0.127 0.873 46 H 0.128 0.872 47 H 0.050 0.950 48 H 0.057 0.943 49 H 0.017 0.983 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.689 -25.023 -1.970 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.195 4.195 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.382 4.382 8 H 0.081 0.919 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.166 4.166 12 C -0.108 4.108 13 C -0.001 4.001 14 N -0.375 5.375 15 C 0.308 3.692 16 O -0.412 6.412 17 C -0.085 4.085 18 H 0.121 0.879 19 C -0.184 4.184 20 C -0.011 4.011 21 O -0.230 6.230 22 C 0.096 3.904 23 C -0.170 4.170 24 C -0.102 4.102 25 C -0.167 4.167 26 C -0.101 4.101 27 C -0.154 4.154 28 C -0.173 4.173 29 C 0.047 3.953 30 H 0.064 0.936 31 H 0.071 0.929 32 H 0.033 0.967 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.236 0.764 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.130 0.870 42 H 0.084 0.916 43 H 0.149 0.851 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.146 0.854 47 H 0.069 0.931 48 H 0.076 0.924 49 H 0.035 0.965 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.752 -24.963 -2.926 25.146 hybrid contribution 0.517 1.142 0.583 1.383 sum -0.235 -23.821 -2.343 23.937 Atomic orbital electron populations 1.69980 1.05261 1.25370 1.54327 1.25177 0.95421 0.98419 1.00483 0.86199 0.79289 0.83857 0.77289 1.20257 1.21557 1.21641 1.19210 0.90794 0.83925 1.44243 0.91872 1.44000 1.32099 1.03614 1.51817 1.20806 0.97586 0.87198 0.92511 1.22007 0.96747 0.98648 0.99243 1.21310 0.98666 0.94677 0.96183 1.21625 1.01561 0.81163 0.95757 1.46225 1.73282 1.07695 1.10324 1.20177 0.76141 0.85284 0.87551 1.90701 1.49379 1.86845 1.14226 1.20164 0.94218 0.93365 1.00757 0.87946 1.22157 1.01118 0.93836 1.01326 1.23006 0.80435 0.96232 1.01473 1.85988 1.15169 1.43478 1.78324 1.18613 0.89156 0.87849 0.94797 1.20593 0.90693 1.00865 1.04798 1.20985 0.98663 0.93363 0.97160 1.21063 0.96754 0.95907 1.02957 1.21123 0.92520 0.99571 0.96880 1.19342 0.95351 0.93098 1.07564 1.22191 1.00190 0.95200 0.99735 1.20770 0.88206 0.96864 0.89479 0.93648 0.92932 0.96660 0.93544 0.92213 0.91322 0.91781 0.91489 0.76439 0.88682 0.89233 0.86997 0.91554 0.85107 0.85252 0.85507 0.85389 0.93107 0.92441 0.96462 0.89329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.93 11.07 55.49 0.61 -25.31 16 2 C 0.00 0.10 5.05 -17.43 -0.09 0.01 16 3 Si 0.90 21.50 29.57 -169.99 -5.03 16.48 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.25 -6.81 9.57 -15.06 -0.14 -6.96 16 8 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 9 N -0.59 -14.44 2.99 -172.59 -0.52 -14.96 16 10 C 0.15 2.90 6.49 -3.93 -0.03 2.87 16 11 C -0.13 -2.01 5.23 -26.83 -0.14 -2.15 16 12 C -0.09 -1.35 2.19 -90.58 -0.20 -1.55 16 13 C 0.12 1.67 5.07 -4.03 -0.02 1.64 16 14 N -0.72 -8.33 4.11 -60.29 -0.25 -8.58 16 15 C 0.52 6.63 6.12 -10.99 -0.07 6.56 16 16 O -0.54 -8.91 15.89 5.55 0.09 -8.82 16 17 C -0.06 -0.63 2.70 -92.85 -0.25 -0.88 16 18 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 19 C -0.15 -1.30 5.26 -26.48 -0.14 -1.44 16 20 C 0.06 0.46 7.03 37.37 0.26 0.73 16 21 O -0.32 -3.24 10.27 -19.25 -0.20 -3.43 16 22 C 0.14 1.52 6.47 -39.21 -0.25 1.27 16 23 C -0.15 -1.44 9.94 -39.34 -0.39 -1.83 16 24 C -0.08 -0.72 10.04 -39.66 -0.40 -1.12 16 25 C -0.15 -1.40 10.05 -39.61 -0.40 -1.80 16 26 C -0.08 -0.87 9.10 -39.51 -0.36 -1.23 16 27 C -0.15 -1.64 5.42 -104.44 -0.57 -2.20 16 28 C -0.13 -2.42 5.36 -26.61 -0.14 -2.56 16 29 C 0.17 3.99 5.26 -3.71 -0.02 3.97 16 30 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 31 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.05 0.60 7.15 -51.93 -0.37 0.23 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.40 3.76 7.39 -40.82 -0.30 3.46 16 39 H 0.09 1.07 7.44 -51.93 -0.39 0.69 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.13 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 46 H 0.13 1.28 6.20 -52.49 -0.33 0.95 16 47 H 0.05 0.84 8.14 -51.92 -0.42 0.41 16 48 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.09 2.33 6.13 -51.92 -0.32 2.01 16 LS Contribution 391.86 15.07 5.91 5.91 Total: -1.00 -32.40 391.86 -10.72 -43.12 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -8.00 Total: 2.26 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -3.34 Total: -6.67 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: -0.15 Total: -48.84 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: -0.11 Total: -12.25 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.40 -10.72 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332110293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.254 kcal (2) G-P(sol) polarization free energy of solvation -32.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds