Wall clock time and date at job start Wed Apr 1 2020 02:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86796 * 119.99854 * 2 1 4 4 H 1.48498 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47421 * 300.00302 * 3 2 1 6 6 H 1.48503 * 109.47146 * 59.99911 * 3 2 1 7 7 C 1.38808 * 120.00134 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99958 * 190.55942 * 7 2 1 9 9 N 1.36940 * 119.99860 * 10.27433 * 7 2 1 10 10 C 1.46925 * 120.62969 * 211.69727 * 9 7 2 11 11 C 1.52760 * 109.00942 * 233.58693 * 10 9 7 12 12 C 1.53039 * 109.38071 * 305.58974 * 11 10 9 13 13 C 1.53008 * 109.45865 * 181.25857 * 12 11 10 14 14 N 1.46509 * 109.47011 * 64.93223 * 13 12 11 15 15 C 1.34768 * 119.99857 * 180.02562 * 14 13 12 16 16 O 1.21284 * 120.00206 * 4.59689 * 15 14 13 17 17 C 1.50703 * 120.00116 * 184.60241 * 15 14 13 18 18 H 1.09002 * 109.43246 * 326.99136 * 17 15 14 19 19 C 1.53071 * 109.43736 * 207.07616 * 17 15 14 20 20 C 1.53411 * 108.28944 * 191.74456 * 19 17 15 21 21 O 1.42823 * 108.37431 * 64.74352 * 20 19 17 22 22 C 1.35844 * 117.86291 * 310.85129 * 21 20 19 23 23 C 1.39149 * 118.49976 * 197.01683 * 22 21 20 24 24 C 1.37968 * 120.21289 * 180.17808 * 23 22 21 25 25 C 1.38292 * 119.96370 * 0.02562 * 24 23 22 26 26 C 1.38105 * 119.97876 * 359.91416 * 25 24 23 27 27 C 1.38316 * 121.79179 * 17.11092 * 22 21 20 28 28 C 1.53031 * 109.53914 * 61.24146 * 12 11 10 29 29 C 1.46920 * 120.63281 * 31.97838 * 9 7 2 30 30 H 0.96999 * 119.99796 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.58799 * 353.42249 * 10 9 7 32 32 H 1.08994 * 109.58986 * 113.84494 * 10 9 7 33 33 H 1.09001 * 109.56749 * 185.54874 * 11 10 9 34 34 H 1.09002 * 109.36223 * 65.50004 * 11 10 9 35 35 H 1.09000 * 109.45019 * 301.21964 * 12 11 10 36 36 H 1.09001 * 109.47247 * 184.92561 * 13 12 11 37 37 H 1.08991 * 109.47037 * 304.93230 * 13 12 11 38 38 H 0.97001 * 119.99453 * 359.97438 * 14 13 12 39 39 H 1.08992 * 109.70085 * 311.44186 * 19 17 15 40 40 H 1.09001 * 109.70040 * 72.04407 * 19 17 15 41 41 H 1.08997 * 109.68486 * 184.47166 * 20 19 17 42 42 H 1.08998 * 109.68349 * 304.98534 * 20 19 17 43 43 H 1.07997 * 119.89099 * 0.15926 * 23 22 21 44 44 H 1.08001 * 120.01793 * 180.02562 * 24 23 22 45 45 H 1.07993 * 120.00728 * 179.97438 * 25 24 23 46 46 H 1.08001 * 119.83964 * 180.02562 * 26 25 24 47 47 H 1.09010 * 109.49570 * 178.68370 * 28 12 11 48 48 H 1.08998 * 109.53090 * 58.60259 * 28 12 11 49 49 H 1.08997 * 109.59050 * 246.15634 * 29 9 7 50 50 H 1.09008 * 109.58782 * 6.44104 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3465 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0765 -1.2101 0.1709 9 7 1.3421 -2.3784 -0.2126 10 6 1.7983 -3.6232 0.4208 11 6 1.9864 -4.6897 -0.6566 12 6 0.6930 -4.8314 -1.4623 13 6 0.8691 -5.9213 -2.5216 14 7 1.0611 -7.2159 -1.8630 15 6 1.2383 -8.3284 -2.6027 16 8 1.3224 -8.2471 -3.8099 17 6 1.3319 -9.6736 -1.9298 18 1 1.8096 -9.5599 -0.9567 19 6 2.1640 -10.6207 -2.7981 20 6 2.0000 -12.0445 -2.2510 21 8 0.6359 -12.4349 -2.4135 22 6 -0.3257 -11.5739 -1.9900 23 6 -1.6162 -12.0595 -1.8027 24 6 -2.6208 -11.2152 -1.3770 25 6 -2.3461 -9.8815 -1.1357 26 6 -1.0662 -9.3963 -1.3192 27 6 -0.0531 -10.2400 -1.7456 28 6 0.3687 -3.5021 -2.1476 29 6 0.1590 -2.4210 -1.0826 30 1 -0.4850 0.8401 -0.0004 31 1 2.7464 -3.4483 0.9293 32 1 1.0526 -3.9618 1.1400 33 1 2.2293 -5.6433 -0.1877 34 1 2.7982 -4.3932 -1.3208 35 1 -0.1234 -5.1038 -0.7933 36 1 -0.0193 -5.9625 -3.1517 37 1 1.7401 -5.6935 -3.1359 38 1 1.0613 -7.2720 -0.8947 39 1 1.8109 -10.5801 -3.8285 40 1 3.2137 -10.3299 -2.7571 41 1 2.6456 -12.7269 -2.8038 42 1 2.2648 -12.0643 -1.1938 43 1 -1.8320 -13.1007 -1.9916 44 1 -3.6212 -11.5956 -1.2323 45 1 -3.1321 -9.2198 -0.8028 46 1 -0.8541 -8.3544 -1.1297 47 1 -0.5399 -3.6103 -2.7400 48 1 1.1953 -3.2164 -2.7982 49 1 -0.7232 -2.6595 -0.4886 50 1 0.0243 -1.4523 -1.5640 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332110293.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:40:45 Heat of formation + Delta-G solvation = -59.530202 kcal Electronic energy + Delta-G solvation = -30255.773452 eV Core-core repulsion = 26247.082639 eV Total energy + Delta-G solvation = -4008.690814 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.11820 -40.54523 -39.33748 -38.45610 -36.45959 -35.32013 -34.45906 -32.53313 -31.63397 -31.39097 -31.18563 -28.83406 -27.25281 -25.65122 -24.69457 -23.86839 -23.58627 -22.64923 -21.89496 -20.90634 -20.54966 -19.04107 -18.69035 -18.00379 -17.73630 -17.19033 -17.01608 -16.76327 -16.15255 -15.92182 -15.72185 -15.31730 -15.28995 -15.00674 -14.93062 -14.81645 -14.65300 -14.28803 -14.19561 -13.96760 -13.84773 -13.42402 -13.37886 -12.99941 -12.90304 -12.79847 -12.61825 -12.48378 -12.26616 -12.06130 -11.98426 -11.85686 -11.83819 -11.63333 -11.62092 -11.28348 -11.10806 -10.90626 -10.55529 -10.12029 -9.80430 -9.15623 -8.60634 -7.86659 -5.37410 0.27019 0.43259 1.44994 1.46907 1.51841 1.56877 2.08507 2.36524 2.50214 2.77950 3.28948 3.42380 3.55292 3.67801 3.72138 3.81988 3.85802 3.94020 4.08263 4.10889 4.14364 4.20774 4.37336 4.50254 4.51684 4.52021 4.53742 4.54506 4.65684 4.68673 4.74317 4.81320 4.91116 4.94634 5.00972 5.02862 5.08857 5.13925 5.28826 5.29255 5.30217 5.36486 5.42890 5.45194 5.56734 5.57189 5.66243 5.81011 5.82618 6.42730 6.44685 6.47767 7.15686 7.17487 7.88196 8.39737 9.19015 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.022453 B = 0.002161 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.750150 B =12954.523278 C =13585.797916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.966 3.034 4 H -0.267 1.267 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.260 4.260 8 H 0.063 0.937 9 N -0.613 5.613 10 C 0.140 3.860 11 C -0.114 4.114 12 C -0.077 4.077 13 C 0.136 3.864 14 N -0.712 5.712 15 C 0.525 3.475 16 O -0.579 6.579 17 C -0.059 4.059 18 H 0.132 0.868 19 C -0.145 4.145 20 C 0.062 3.938 21 O -0.330 6.330 22 C 0.125 3.875 23 C -0.161 4.161 24 C -0.082 4.082 25 C -0.158 4.158 26 C -0.098 4.098 27 C -0.166 4.166 28 C -0.123 4.123 29 C 0.179 3.821 30 H 0.249 0.751 31 H 0.051 0.949 32 H 0.018 0.982 33 H 0.086 0.914 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.414 0.586 39 H 0.065 0.935 40 H 0.106 0.894 41 H 0.134 0.866 42 H 0.085 0.915 43 H 0.144 0.856 44 H 0.155 0.845 45 H 0.141 0.859 46 H 0.130 0.870 47 H 0.067 0.933 48 H 0.048 0.952 49 H -0.001 1.001 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.017 -27.092 -1.250 27.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.795 3.205 4 H -0.191 1.191 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.391 4.391 8 H 0.081 0.919 9 N -0.337 5.337 10 C 0.015 3.985 11 C -0.153 4.153 12 C -0.095 4.095 13 C 0.012 3.988 14 N -0.364 5.364 15 C 0.312 3.688 16 O -0.459 6.459 17 C -0.080 4.080 18 H 0.149 0.851 19 C -0.183 4.183 20 C -0.012 4.012 21 O -0.245 6.245 22 C 0.079 3.921 23 C -0.180 4.180 24 C -0.100 4.100 25 C -0.176 4.176 26 C -0.116 4.116 27 C -0.167 4.167 28 C -0.163 4.163 29 C 0.053 3.947 30 H 0.059 0.941 31 H 0.069 0.931 32 H 0.036 0.964 33 H 0.104 0.896 34 H 0.068 0.932 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.074 0.926 38 H 0.252 0.748 39 H 0.083 0.917 40 H 0.124 0.876 41 H 0.152 0.848 42 H 0.103 0.897 43 H 0.161 0.839 44 H 0.173 0.827 45 H 0.159 0.841 46 H 0.148 0.852 47 H 0.086 0.914 48 H 0.067 0.933 49 H 0.017 0.983 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.026 -27.065 -2.173 27.152 hybrid contribution 0.274 1.743 0.380 1.805 sum 0.248 -25.321 -1.793 25.386 Atomic orbital electron populations 1.70137 1.06580 1.25664 1.55811 1.25903 0.96192 1.01479 1.00990 0.85220 0.78596 0.79962 0.76767 1.19129 1.21803 1.21791 1.19516 0.91080 0.85281 1.43226 0.91926 1.44283 1.32140 1.04446 1.52792 1.20988 0.97299 0.86492 0.93733 1.21862 0.96602 0.98957 0.97903 1.21136 0.98698 0.93400 0.96314 1.21283 1.00962 0.81581 0.94951 1.46069 1.72649 1.06708 1.10967 1.20669 0.74874 0.86271 0.87011 1.90687 1.51378 1.87513 1.16274 1.20217 0.94436 0.91472 1.01903 0.85058 1.22143 1.01729 0.94891 0.99525 1.23250 0.79463 0.95574 1.02952 1.85966 1.16253 1.43761 1.78475 1.18862 0.89849 0.88142 0.95199 1.20897 0.90606 1.01789 1.04686 1.21313 0.99682 0.92996 0.96037 1.21342 0.96853 0.96626 1.02786 1.21269 0.93089 0.99726 0.97494 1.19465 0.95815 0.93329 1.08100 1.21987 1.00740 0.95267 0.98264 1.20551 0.87425 0.96638 0.90057 0.94148 0.93090 0.96364 0.89571 0.93245 0.90307 0.92147 0.92581 0.74816 0.91662 0.87585 0.84797 0.89657 0.83850 0.82696 0.84103 0.85241 0.91448 0.93320 0.98325 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.12 11.07 21.65 0.24 -54.88 16 2 C -0.05 -2.81 5.05 84.86 0.43 -2.38 16 3 Si 0.97 44.83 29.57 68.60 2.03 46.86 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 5 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 6 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 7 C -0.26 -14.23 9.57 84.03 0.80 -13.43 16 8 H 0.06 3.36 7.85 -2.91 -0.02 3.33 16 9 N -0.61 -30.09 2.99 -699.94 -2.09 -32.18 16 10 C 0.14 5.41 6.49 86.22 0.56 5.97 16 11 C -0.11 -3.35 5.23 30.53 0.16 -3.19 16 12 C -0.08 -2.17 2.19 -10.77 -0.02 -2.19 16 13 C 0.14 3.47 5.07 86.38 0.44 3.90 16 14 N -0.71 -14.67 4.11 -463.04 -1.90 -16.57 16 15 C 0.52 12.46 6.12 87.66 0.54 12.99 16 16 O -0.58 -19.01 15.89 -3.04 -0.05 -19.06 16 17 C -0.06 -1.04 2.70 -12.24 -0.03 -1.08 16 18 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 19 C -0.14 -2.35 5.26 30.76 0.16 -2.18 16 20 C 0.06 0.76 7.03 72.12 0.51 1.27 16 21 O -0.33 -6.29 10.27 -91.79 -0.94 -7.24 16 22 C 0.12 2.53 6.47 22.51 0.15 2.68 16 23 C -0.16 -2.83 9.94 22.42 0.22 -2.61 16 24 C -0.08 -1.26 10.04 22.22 0.22 -1.04 16 25 C -0.16 -2.70 10.05 22.25 0.22 -2.47 16 26 C -0.10 -1.88 9.10 22.32 0.20 -1.68 16 27 C -0.17 -3.31 5.42 -19.75 -0.11 -3.41 16 28 C -0.12 -4.40 5.36 30.67 0.16 -4.24 16 29 C 0.18 8.44 5.26 86.36 0.45 8.90 16 30 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 31 H 0.05 1.96 7.93 -2.38 -0.02 1.94 16 32 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.09 1.87 7.15 -2.39 -0.02 1.86 16 34 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 38 H 0.41 6.34 7.39 -92.71 -0.69 5.65 16 39 H 0.06 1.47 7.44 -2.39 -0.02 1.45 16 40 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.13 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 43 H 0.14 2.02 8.06 -2.91 -0.02 2.00 16 44 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 45 H 0.14 1.90 8.06 -2.91 -0.02 1.88 16 46 H 0.13 2.34 6.20 -2.91 -0.02 2.32 16 47 H 0.07 2.17 8.14 -2.38 -0.02 2.15 16 48 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 49 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 50 H 0.05 2.75 6.13 -2.38 -0.01 2.73 16 Total: -1.00 -72.51 391.86 2.60 -69.91 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.25 Total: 17.35 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 5.07 Total: -4.19 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.76 Total: -103.64 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.99 Total: -26.29 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -72.51 2.60 -69.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332110293.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.379 kcal (2) G-P(sol) polarization free energy of solvation -72.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds