Wall clock time and date at job start Wed Apr 1 2020 02:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00056 * 2 1 4 4 H 1.48501 * 109.47115 * 269.99899 * 3 2 1 5 5 H 1.48500 * 109.47156 * 29.99936 * 3 2 1 6 6 H 1.48498 * 109.47435 * 149.99594 * 3 2 1 7 7 C 1.37873 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99570 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00565 * 180.02562 * 7 2 1 10 10 O 1.42899 * 109.47843 * 179.97438 * 9 7 2 11 11 C 1.42893 * 114.00698 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47693 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47139 * 64.99959 * 12 11 10 14 14 C 1.46841 * 111.00281 * 190.00435 * 13 12 11 15 15 C 1.53042 * 109.52629 * 174.16212 * 14 13 12 16 16 C 1.53117 * 109.27613 * 59.17734 * 15 14 13 17 17 C 1.53005 * 109.51971 * 182.37760 * 16 15 14 18 18 H 1.09004 * 110.45505 * 57.27405 * 17 16 15 19 19 C 1.51384 * 110.51227 * 294.52055 * 17 16 15 20 20 O 1.21287 * 126.44417 * 61.33249 * 19 17 16 21 21 N 1.34369 * 107.11467 * 241.35538 * 19 17 16 22 22 C 1.39525 * 112.24999 * 359.97438 * 21 19 17 23 23 C 1.39363 * 130.83077 * 179.97438 * 22 21 19 24 24 C 1.37946 * 120.13136 * 179.97438 * 23 22 21 25 25 C 1.38298 * 120.37660 * 0.04027 * 24 23 22 26 26 C 1.38402 * 119.82570 * 359.97438 * 25 24 23 27 27 C 1.37679 * 119.91084 * 359.97438 * 26 25 24 28 28 C 1.53120 * 109.16267 * 302.34396 * 16 15 14 29 29 C 1.46850 * 110.99956 * 65.79123 * 13 12 11 30 30 H 0.96998 * 119.99591 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47001 * 60.00116 * 9 7 2 32 32 H 1.09000 * 109.47295 * 300.00416 * 9 7 2 33 33 H 1.08998 * 109.46965 * 60.00128 * 11 10 9 34 34 H 1.09006 * 109.47288 * 300.00836 * 11 10 9 35 35 H 1.09001 * 109.46794 * 305.00768 * 12 11 10 36 36 H 1.08997 * 109.47256 * 185.00187 * 12 11 10 37 37 H 1.08998 * 109.46320 * 54.14149 * 14 13 12 38 38 H 1.08998 * 109.45620 * 294.17285 * 14 13 12 39 39 H 1.09003 * 109.49792 * 299.23877 * 15 14 13 40 40 H 1.08994 * 109.50340 * 179.12119 * 15 14 13 41 41 H 1.09002 * 109.52261 * 62.25263 * 16 15 14 42 42 H 0.97009 * 123.87793 * 179.97438 * 21 19 17 43 43 H 1.07998 * 119.93313 * 359.97438 * 23 22 21 44 44 H 1.08001 * 119.80775 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.08992 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.04339 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.50326 * 177.59202 * 28 16 15 48 48 H 1.08999 * 109.50267 * 297.71858 * 28 16 15 49 49 H 1.09002 * 109.46123 * 305.85896 * 29 13 12 50 50 H 1.08999 * 109.45959 * 65.82235 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 3.9880 -2.5413 0.0022 11 6 5.4124 -2.6542 0.0022 12 6 5.8070 -4.1324 0.0028 13 7 5.3678 -4.7569 -1.2522 14 6 5.5139 -6.2168 -1.1928 15 6 4.9142 -6.8426 -2.4542 16 6 5.6359 -6.2883 -3.6856 17 6 5.0015 -6.8652 -4.9528 18 1 3.9366 -6.6349 -4.9844 19 6 5.2262 -8.3606 -5.0250 20 8 4.8350 -9.1872 -4.2283 21 7 5.9409 -8.5998 -6.1374 22 6 6.2324 -7.4300 -6.8398 23 6 6.9391 -7.2306 -8.0243 24 6 7.0964 -5.9571 -8.5307 25 6 6.5564 -4.8696 -7.8687 26 6 5.8536 -5.0597 -6.6917 27 6 5.6942 -6.3298 -6.1847 28 6 5.5097 -4.7624 -3.6977 29 6 6.0921 -4.1970 -2.4003 30 1 -0.4849 0.8401 -0.0004 31 1 3.8745 -0.6800 0.8912 32 1 3.8753 -0.6804 -0.8888 33 1 5.8152 -2.1699 0.8918 34 1 5.8153 -2.1712 -0.8881 35 1 5.3311 -4.6351 0.8448 36 1 6.8898 -4.2194 0.0924 37 1 4.9927 -6.5986 -0.3150 38 1 6.5712 -6.4735 -1.1276 39 1 3.8537 -6.5977 -2.5129 40 1 5.0368 -7.9250 -2.4170 41 1 6.6892 -6.5664 -3.6464 42 1 6.2220 -9.4843 -6.4197 43 1 7.3643 -8.0747 -8.5468 44 1 7.6447 -5.8086 -9.4493 45 1 6.6828 -3.8745 -8.2691 46 1 5.4308 -4.2129 -6.1716 47 1 6.0578 -4.3586 -4.5490 48 1 4.4585 -4.4848 -3.7760 49 1 5.9909 -3.1116 -2.3994 50 1 7.1467 -4.4632 -2.3293 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338952892.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:39 Heat of formation + Delta-G solvation = -40.561212 kcal Electronic energy + Delta-G solvation = -30211.332324 eV Core-core repulsion = 26203.464067 eV Total energy + Delta-G solvation = -4007.868257 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.05020 -39.05658 -38.70212 -36.79866 -35.96662 -34.80521 -32.61376 -31.80917 -30.75458 -30.05643 -29.24767 -28.01395 -26.88795 -24.06281 -23.30274 -22.77113 -21.78177 -21.57960 -21.29377 -20.61484 -19.77793 -18.23360 -17.11522 -16.79867 -16.55027 -16.21634 -15.74504 -15.63930 -15.07385 -14.91536 -14.64969 -14.43446 -14.30898 -14.22060 -14.10109 -13.98915 -13.48232 -13.13320 -13.03756 -12.73520 -12.67720 -12.40351 -12.31867 -12.06142 -11.75190 -11.53633 -11.34159 -11.20121 -11.16144 -11.04724 -10.91268 -10.76461 -10.67504 -10.39657 -10.20146 -9.88147 -9.78556 -9.21970 -9.10083 -8.76271 -8.39690 -8.38103 -8.03182 -6.06011 -4.04066 0.81101 0.95083 2.16549 2.63946 3.27232 3.34181 3.35825 3.41036 3.79113 4.02069 4.02912 4.39725 4.42368 4.56993 4.66444 4.69428 4.74243 4.90486 4.94689 5.01199 5.11324 5.25181 5.26178 5.29936 5.34967 5.40304 5.51847 5.54789 5.56664 5.61939 5.70700 5.71276 5.81432 5.84815 5.91943 5.99280 6.01980 6.04111 6.14215 6.16177 6.22043 6.24367 6.26657 6.42440 6.44980 6.64894 6.66566 7.06322 7.29172 7.32080 7.65262 7.66661 8.12573 8.75573 9.07962 9.53940 11.07232 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.002492 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.268804 B =11231.156569 C =12171.905728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.875 3.125 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.363 6.363 11 C 0.062 3.938 12 C 0.062 3.938 13 N -0.523 5.523 14 C 0.060 3.940 15 C -0.118 4.118 16 C -0.058 4.058 17 C -0.079 4.079 18 H 0.128 0.872 19 C 0.533 3.467 20 O -0.493 6.493 21 N -0.663 5.663 22 C 0.140 3.860 23 C -0.142 4.142 24 C -0.088 4.088 25 C -0.140 4.140 26 C -0.065 4.065 27 C -0.129 4.129 28 C -0.116 4.116 29 C 0.056 3.944 30 H 0.265 0.735 31 H -0.001 1.001 32 H -0.005 1.005 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.077 0.923 38 H 0.024 0.976 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.067 0.933 42 H 0.411 0.589 43 H 0.124 0.876 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.137 0.863 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.081 0.919 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.283 -14.452 -16.885 29.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.200 1.200 5 H -0.209 1.209 6 H -0.192 1.192 7 C -0.551 4.551 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.282 6.282 11 C -0.016 4.016 12 C -0.066 4.066 13 N -0.248 5.248 14 C -0.067 4.067 15 C -0.156 4.156 16 C -0.077 4.077 17 C -0.100 4.100 18 H 0.146 0.854 19 C 0.321 3.679 20 O -0.367 6.367 21 N -0.306 5.306 22 C 0.043 3.957 23 C -0.163 4.163 24 C -0.106 4.106 25 C -0.159 4.159 26 C -0.083 4.083 27 C -0.132 4.132 28 C -0.154 4.154 29 C -0.072 4.072 30 H 0.075 0.925 31 H 0.017 0.983 32 H 0.013 0.987 33 H 0.057 0.943 34 H 0.055 0.945 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.095 0.905 38 H 0.043 0.957 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.249 0.751 43 H 0.142 0.858 44 H 0.147 0.853 45 H 0.148 0.852 46 H 0.155 0.845 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.099 0.901 50 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 18.198 -14.808 -16.376 28.612 hybrid contribution 1.625 0.534 -0.192 1.722 sum 19.824 -14.274 -16.568 29.516 Atomic orbital electron populations 1.69882 1.06033 1.26938 1.50725 1.24771 0.94780 0.98665 0.94841 0.86865 0.80346 0.83918 0.78678 1.20005 1.20884 1.19182 1.20901 0.88340 0.95268 1.50603 0.89901 1.20570 0.96176 0.80030 0.93970 1.88018 1.16732 1.28571 1.94838 1.22354 0.85779 0.94711 0.98767 1.22098 0.96760 0.95185 0.92561 1.61793 1.56910 1.03693 1.02376 1.22038 0.98123 0.87865 0.98722 1.21772 1.01099 1.00213 0.92514 1.20938 0.99085 0.96206 0.91472 1.20849 1.03090 0.91559 0.94471 0.85413 1.20627 0.76337 0.91376 0.79582 1.90802 1.50745 1.53140 1.41976 1.43776 1.53487 1.08857 1.24515 1.18173 0.97888 0.85766 0.93900 1.20350 1.02603 0.98269 0.95039 1.20888 0.98635 0.91560 0.99526 1.21142 0.99702 0.99300 0.95724 1.20566 0.97206 0.95397 0.95152 1.19804 1.02788 0.93405 0.97191 1.21853 1.03205 0.93261 0.97077 1.22103 0.94240 1.00311 0.90529 0.92468 0.98341 0.98685 0.94281 0.94473 0.89946 0.94450 0.90464 0.95734 0.90275 0.90292 0.91429 0.75121 0.85811 0.85307 0.85199 0.84504 0.90867 0.89986 0.90066 0.95683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.98 13.96 55.43 0.77 -27.21 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 3 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 6 H -0.27 -6.31 6.54 56.52 0.37 -5.94 16 7 C -0.51 -15.47 9.99 -34.44 -0.34 -15.82 16 8 H 0.08 2.75 8.06 -52.49 -0.42 2.33 16 9 C 0.17 4.33 4.76 36.00 0.17 4.50 16 10 O -0.36 -8.58 10.27 -35.23 -0.36 -8.94 16 11 C 0.06 1.09 6.00 37.16 0.22 1.32 16 12 C 0.06 0.91 5.35 -3.83 -0.02 0.89 16 13 N -0.52 -7.74 4.60 -234.67 -1.08 -8.82 16 14 C 0.06 0.78 5.46 -3.83 -0.02 0.75 16 15 C -0.12 -1.45 5.09 -26.65 -0.14 -1.59 16 16 C -0.06 -0.62 1.84 -90.49 -0.17 -0.79 16 17 C -0.08 -0.79 2.57 -92.37 -0.24 -1.03 16 18 H 0.13 1.29 8.14 -51.93 -0.42 0.87 16 19 C 0.53 5.86 7.86 -10.83 -0.09 5.77 16 20 O -0.49 -6.88 16.11 5.55 0.09 -6.79 16 21 N -0.66 -5.59 5.88 -9.70 -0.06 -5.64 16 22 C 0.14 1.16 7.11 -83.69 -0.60 0.57 16 23 C -0.14 -0.93 10.07 -39.27 -0.40 -1.33 16 24 C -0.09 -0.53 10.02 -39.67 -0.40 -0.93 16 25 C -0.14 -0.93 10.07 -39.50 -0.40 -1.33 16 26 C -0.06 -0.52 8.55 -39.73 -0.34 -0.86 16 27 C -0.13 -1.16 5.48 -104.37 -0.57 -1.73 16 28 C -0.12 -1.29 4.71 -26.65 -0.13 -1.42 16 29 C 0.06 0.71 5.30 -3.83 -0.02 0.69 16 30 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 31 H 0.00 -0.03 7.20 -51.93 -0.37 -0.40 16 32 H 0.00 -0.11 7.57 -51.93 -0.39 -0.51 16 33 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.04 0.62 6.22 -51.93 -0.32 0.30 16 35 H 0.08 1.24 7.99 -51.93 -0.41 0.83 16 36 H 0.04 0.46 8.12 -51.93 -0.42 0.04 16 37 H 0.08 1.00 8.01 -51.93 -0.42 0.58 16 38 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.00 6.24 -51.93 -0.32 0.68 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.41 2.54 8.96 -40.82 -0.37 2.17 16 43 H 0.12 0.56 8.06 -52.49 -0.42 0.13 16 44 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 45 H 0.13 0.64 8.06 -52.49 -0.42 0.21 16 46 H 0.14 1.01 6.38 -52.49 -0.33 0.67 16 47 H 0.07 0.68 5.01 -51.93 -0.26 0.42 16 48 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 49 H 0.08 1.11 6.12 -51.93 -0.32 0.79 16 50 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 390.08 15.07 5.88 5.88 Total: -1.00 -34.71 390.08 -10.75 -45.46 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.76 Total: -0.52 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -3.56 Total: -10.32 kcal Atomic # 7 Polarization: -41.30 SS G_CDS: -0.36 Total: -41.66 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.27 Total: -15.73 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.71 -10.75 -45.46 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338952892.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.897 kcal (2) G-P(sol) polarization free energy of solvation -34.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds