Wall clock time and date at job start Wed Apr 1 2020 02:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 120.00056 * 2 1 4 4 H 1.48501 * 109.47115 * 269.99899 * 3 2 1 5 5 H 1.48500 * 109.47156 * 29.99936 * 3 2 1 6 6 H 1.48498 * 109.47435 * 149.99594 * 3 2 1 7 7 C 1.37873 * 120.00324 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99570 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00565 * 180.02562 * 7 2 1 10 10 O 1.42899 * 109.47843 * 179.97438 * 9 7 2 11 11 C 1.42893 * 114.00698 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47693 * 180.02562 * 11 10 9 13 13 N 1.46899 * 109.47139 * 64.99959 * 12 11 10 14 14 C 1.46841 * 111.00281 * 190.00435 * 13 12 11 15 15 C 1.53042 * 109.52629 * 174.16212 * 14 13 12 16 16 C 1.53117 * 109.27613 * 59.17734 * 15 14 13 17 17 C 1.53005 * 109.51971 * 182.37760 * 16 15 14 18 18 H 1.09004 * 110.45505 * 57.27405 * 17 16 15 19 19 C 1.51384 * 110.51227 * 294.52055 * 17 16 15 20 20 O 1.21287 * 126.44417 * 61.33249 * 19 17 16 21 21 N 1.34369 * 107.11467 * 241.35538 * 19 17 16 22 22 C 1.39525 * 112.24999 * 359.97438 * 21 19 17 23 23 C 1.39363 * 130.83077 * 179.97438 * 22 21 19 24 24 C 1.37946 * 120.13136 * 179.97438 * 23 22 21 25 25 C 1.38298 * 120.37660 * 0.04027 * 24 23 22 26 26 C 1.38402 * 119.82570 * 359.97438 * 25 24 23 27 27 C 1.37679 * 119.91084 * 359.97438 * 26 25 24 28 28 C 1.53120 * 109.16267 * 302.34396 * 16 15 14 29 29 C 1.46850 * 110.99956 * 65.79123 * 13 12 11 30 30 H 0.96998 * 119.99591 * 0.02562 * 1 2 3 31 31 H 1.09006 * 109.47001 * 60.00116 * 9 7 2 32 32 H 1.09000 * 109.47295 * 300.00416 * 9 7 2 33 33 H 1.08998 * 109.46965 * 60.00128 * 11 10 9 34 34 H 1.09006 * 109.47288 * 300.00836 * 11 10 9 35 35 H 1.09001 * 109.46794 * 305.00768 * 12 11 10 36 36 H 1.08997 * 109.47256 * 185.00187 * 12 11 10 37 37 H 1.08998 * 109.46320 * 54.14149 * 14 13 12 38 38 H 1.08998 * 109.45620 * 294.17285 * 14 13 12 39 39 H 1.09003 * 109.49792 * 299.23877 * 15 14 13 40 40 H 1.08994 * 109.50340 * 179.12119 * 15 14 13 41 41 H 1.09002 * 109.52261 * 62.25263 * 16 15 14 42 42 H 0.97009 * 123.87793 * 179.97438 * 21 19 17 43 43 H 1.07998 * 119.93313 * 359.97438 * 23 22 21 44 44 H 1.08001 * 119.80775 * 180.02562 * 24 23 22 45 45 H 1.08001 * 120.08992 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.04339 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.50326 * 177.59202 * 28 16 15 48 48 H 1.08999 * 109.50267 * 297.71858 * 28 16 15 49 49 H 1.09002 * 109.46123 * 305.85896 * 29 13 12 50 50 H 1.08999 * 109.45959 * 65.82235 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 3.9880 -2.5413 0.0022 11 6 5.4124 -2.6542 0.0022 12 6 5.8070 -4.1324 0.0028 13 7 5.3678 -4.7569 -1.2522 14 6 5.5139 -6.2168 -1.1928 15 6 4.9142 -6.8426 -2.4542 16 6 5.6359 -6.2883 -3.6856 17 6 5.0015 -6.8652 -4.9528 18 1 3.9366 -6.6349 -4.9844 19 6 5.2262 -8.3606 -5.0250 20 8 4.8350 -9.1872 -4.2283 21 7 5.9409 -8.5998 -6.1374 22 6 6.2324 -7.4300 -6.8398 23 6 6.9391 -7.2306 -8.0243 24 6 7.0964 -5.9571 -8.5307 25 6 6.5564 -4.8696 -7.8687 26 6 5.8536 -5.0597 -6.6917 27 6 5.6942 -6.3298 -6.1847 28 6 5.5097 -4.7624 -3.6977 29 6 6.0921 -4.1970 -2.4003 30 1 -0.4849 0.8401 -0.0004 31 1 3.8745 -0.6800 0.8912 32 1 3.8753 -0.6804 -0.8888 33 1 5.8152 -2.1699 0.8918 34 1 5.8153 -2.1712 -0.8881 35 1 5.3311 -4.6351 0.8448 36 1 6.8898 -4.2194 0.0924 37 1 4.9927 -6.5986 -0.3150 38 1 6.5712 -6.4735 -1.1276 39 1 3.8537 -6.5977 -2.5129 40 1 5.0368 -7.9250 -2.4170 41 1 6.6892 -6.5664 -3.6464 42 1 6.2220 -9.4843 -6.4197 43 1 7.3643 -8.0747 -8.5468 44 1 7.6447 -5.8086 -9.4493 45 1 6.6828 -3.8745 -8.2691 46 1 5.4308 -4.2129 -6.1716 47 1 6.0578 -4.3586 -4.5490 48 1 4.4585 -4.4848 -3.7760 49 1 5.9909 -3.1116 -2.3994 50 1 7.1467 -4.4632 -2.3293 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338952892.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:45:37 Heat of formation + Delta-G solvation = -64.550095 kcal Electronic energy + Delta-G solvation = -30212.372560 eV Core-core repulsion = 26203.464067 eV Total energy + Delta-G solvation = -4008.908493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.78027 -40.09476 -39.46301 -38.42404 -36.68460 -35.87812 -34.78258 -32.72289 -31.72550 -30.96926 -30.31919 -29.43336 -28.16204 -25.09236 -24.19445 -23.90407 -23.44085 -22.43530 -22.23457 -21.50350 -20.77096 -19.00794 -18.89254 -17.86139 -17.59301 -17.35243 -16.84943 -16.79478 -16.42794 -15.91171 -15.81603 -15.77083 -15.41577 -15.20755 -14.93273 -14.82866 -14.67032 -14.31988 -14.22857 -13.88008 -13.84513 -13.76306 -13.34874 -13.04203 -12.93566 -12.71228 -12.68425 -12.45338 -12.26289 -12.11573 -12.05222 -11.87919 -11.82428 -11.73826 -11.63937 -11.27065 -11.10314 -10.89113 -10.79902 -10.23732 -9.78258 -9.10108 -9.01744 -8.34149 -6.41604 0.18868 0.40708 1.34309 1.37895 1.38167 1.49036 1.96409 2.31845 2.84770 2.94946 2.98272 3.04568 3.18403 3.29454 3.64529 3.81918 3.90587 3.97359 4.16493 4.20212 4.26307 4.28634 4.31792 4.42389 4.44919 4.49201 4.54709 4.56017 4.59829 4.63103 4.66518 4.68426 4.80231 4.88271 4.91732 4.98059 5.01900 5.05934 5.08267 5.15015 5.18263 5.24320 5.42829 5.48239 5.48770 5.59986 5.65132 5.77944 5.98201 6.08285 6.21748 6.28291 6.63079 6.85689 6.89955 7.23247 8.83389 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.012769 B = 0.002492 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2192.268804 B =11231.156569 C =12171.905728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C 0.010 3.990 3 Si 0.958 3.042 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.541 4.541 8 H 0.026 0.974 9 C 0.180 3.820 10 O -0.393 6.393 11 C 0.053 3.947 12 C 0.066 3.934 13 N -0.552 5.552 14 C 0.064 3.936 15 C -0.113 4.113 16 C -0.047 4.047 17 C -0.078 4.078 18 H 0.118 0.882 19 C 0.530 3.470 20 O -0.532 6.532 21 N -0.651 5.651 22 C 0.123 3.877 23 C -0.136 4.136 24 C -0.085 4.085 25 C -0.138 4.138 26 C -0.077 4.077 27 C -0.143 4.143 28 C -0.109 4.109 29 C 0.056 3.944 30 H 0.272 0.728 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.421 0.579 43 H 0.147 0.853 44 H 0.158 0.842 45 H 0.150 0.850 46 H 0.137 0.863 47 H 0.096 0.904 48 H 0.059 0.941 49 H 0.072 0.928 50 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.958 -12.871 -18.805 32.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.187 4.187 3 Si 0.779 3.221 4 H -0.182 1.182 5 H -0.200 1.200 6 H -0.169 1.169 7 C -0.579 4.579 8 H 0.044 0.956 9 C 0.104 3.896 10 O -0.312 6.312 11 C -0.024 4.024 12 C -0.061 4.061 13 N -0.278 5.278 14 C -0.064 4.064 15 C -0.151 4.151 16 C -0.066 4.066 17 C -0.099 4.099 18 H 0.136 0.864 19 C 0.318 3.682 20 O -0.409 6.409 21 N -0.295 5.295 22 C 0.026 3.974 23 C -0.157 4.157 24 C -0.104 4.104 25 C -0.157 4.157 26 C -0.096 4.096 27 C -0.145 4.145 28 C -0.147 4.147 29 C -0.072 4.072 30 H 0.081 0.919 31 H 0.026 0.974 32 H 0.026 0.974 33 H 0.073 0.927 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.261 0.739 43 H 0.165 0.835 44 H 0.176 0.824 45 H 0.168 0.832 46 H 0.155 0.845 47 H 0.114 0.886 48 H 0.078 0.922 49 H 0.090 0.910 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 21.908 -13.246 -18.331 31.488 hybrid contribution 0.451 -0.047 0.321 0.555 sum 22.359 -13.293 -18.010 31.638 Atomic orbital electron populations 1.70049 1.08334 1.28700 1.51367 1.25877 0.95809 1.03487 0.93541 0.85579 0.79387 0.77332 0.79833 1.18222 1.19954 1.16859 1.21165 0.91138 0.93645 1.51958 0.95577 1.20265 0.93135 0.81469 0.94692 1.87976 1.20771 1.27363 1.95086 1.22713 0.82434 0.97077 1.00137 1.22054 0.98506 0.93212 0.92361 1.61746 1.58329 1.04663 1.03067 1.21998 0.98956 0.86955 0.98443 1.21681 0.99932 0.99942 0.93564 1.20799 0.99015 0.95839 0.90938 1.20746 1.02751 0.91323 0.95081 0.86403 1.20713 0.76287 0.91404 0.79817 1.90774 1.52541 1.54045 1.43525 1.43613 1.52495 1.09720 1.23643 1.18370 0.99029 0.85137 0.94832 1.20694 1.01425 0.99514 0.94069 1.21281 0.97962 0.90929 1.00197 1.21454 0.98635 1.00663 0.94936 1.20683 0.97890 0.94949 0.96032 1.19774 1.03560 0.94297 0.96916 1.21800 1.02048 0.93460 0.97380 1.22138 0.95147 0.99665 0.90236 0.91879 0.97357 0.97369 0.92660 0.93093 0.90914 0.91086 0.91308 0.94034 0.92608 0.90786 0.90832 0.73884 0.83476 0.82430 0.83228 0.84484 0.88632 0.92248 0.91007 0.93766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.59 13.96 21.45 0.30 -60.29 16 2 C 0.01 0.62 5.47 84.65 0.46 1.08 16 3 Si 0.96 43.79 27.47 68.60 1.88 45.68 16 4 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16 5 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 6 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 7 C -0.54 -33.82 9.99 25.60 0.26 -33.57 16 8 H 0.03 1.85 8.06 -2.91 -0.02 1.83 16 9 C 0.18 9.23 4.76 71.23 0.34 9.57 16 10 O -0.39 -18.76 10.27 -148.98 -1.53 -20.29 16 11 C 0.05 1.81 6.00 71.98 0.43 2.24 16 12 C 0.07 1.88 5.35 86.30 0.46 2.34 16 13 N -0.55 -16.26 4.60 -896.37 -4.13 -20.38 16 14 C 0.06 1.66 5.46 86.33 0.47 2.13 16 15 C -0.11 -2.93 5.09 30.65 0.16 -2.78 16 16 C -0.05 -1.01 1.84 -10.71 -0.02 -1.03 16 17 C -0.08 -1.62 2.57 -11.93 -0.03 -1.65 16 18 H 0.12 2.61 8.14 -2.38 -0.02 2.60 16 19 C 0.53 11.97 7.86 87.94 0.69 12.67 16 20 O -0.53 -15.60 16.11 -3.05 -0.05 -15.65 16 21 N -0.65 -10.59 5.88 -303.23 -1.78 -12.37 16 22 C 0.12 1.85 7.11 38.35 0.27 2.13 16 23 C -0.14 -1.39 10.07 22.47 0.23 -1.17 16 24 C -0.09 -0.73 10.02 22.21 0.22 -0.50 16 25 C -0.14 -1.45 10.07 22.32 0.22 -1.22 16 26 C -0.08 -1.12 8.55 22.18 0.19 -0.93 16 27 C -0.14 -2.45 5.48 -19.70 -0.11 -2.56 16 28 C -0.11 -2.40 4.71 30.65 0.14 -2.26 16 29 C 0.06 1.35 5.30 86.33 0.46 1.81 16 30 H 0.27 15.97 8.31 -92.71 -0.77 15.20 16 31 H 0.01 0.43 7.20 -2.38 -0.02 0.41 16 32 H 0.01 0.41 7.57 -2.39 -0.02 0.40 16 33 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 1.59 6.22 -2.38 -0.01 1.58 16 35 H 0.07 2.18 7.99 -2.39 -0.02 2.16 16 36 H 0.07 1.55 8.12 -2.39 -0.02 1.53 16 37 H 0.07 1.85 8.01 -2.39 -0.02 1.83 16 38 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.06 1.67 8.14 -2.39 -0.02 1.66 16 40 H 0.07 1.99 6.24 -2.39 -0.01 1.98 16 41 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.42 4.85 8.96 -92.70 -0.83 4.02 16 43 H 0.15 0.78 8.06 -2.91 -0.02 0.76 16 44 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 45 H 0.15 0.94 8.06 -2.91 -0.02 0.92 16 46 H 0.14 1.88 6.38 -2.91 -0.02 1.87 16 47 H 0.10 1.65 5.01 -2.39 -0.01 1.64 16 48 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 49 H 0.07 1.87 6.12 -2.39 -0.01 1.86 16 50 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -78.82 390.08 -0.39 -79.21 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: 0.07 Total: 17.79 kcal Atomic # 6 Polarization: -18.54 SS G_CDS: 4.85 Total: -13.69 kcal Atomic # 7 Polarization: -87.43 SS G_CDS: -5.61 Total: -93.04 kcal Atomic # 8 Polarization: -34.36 SS G_CDS: -1.58 Total: -35.94 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 1.88 Total: 45.68 kcal Total: -78.82 -0.39 -79.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338952892.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.659 kcal (2) G-P(sol) polarization free energy of solvation -78.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds