Wall clock time and date at job start Wed Apr 1 2020 03:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00130 * 2 1 4 4 H 1.48504 * 109.47019 * 270.00442 * 3 2 1 5 5 H 1.48502 * 109.46830 * 29.99742 * 3 2 1 6 6 H 1.48497 * 109.47160 * 149.99953 * 3 2 1 7 7 C 1.37881 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99768 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00011 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99884 * 269.99501 * 10 9 7 12 12 C 1.52999 * 109.47507 * 270.00494 * 11 10 9 13 13 C 1.53003 * 117.49748 * 243.62506 * 12 11 10 14 14 C 1.52992 * 117.50002 * 174.99956 * 12 11 10 15 15 C 1.34777 * 120.00258 * 90.00155 * 10 9 7 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 10 9 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 10 9 18 18 C 1.53002 * 109.46925 * 179.97438 * 17 15 10 19 19 N 1.46496 * 109.47421 * 180.02562 * 18 17 15 20 20 C 1.34777 * 120.00258 * 180.02562 * 19 18 17 21 21 O 1.21279 * 120.00166 * 359.97438 * 20 19 18 22 22 C 1.50696 * 119.99757 * 179.97438 * 20 19 18 23 23 C 1.50702 * 109.47168 * 179.97438 * 22 20 19 24 24 C 1.38234 * 119.99970 * 269.73107 * 23 22 20 25 25 C 1.38240 * 120.00086 * 179.76246 * 24 23 22 26 26 C 1.38237 * 119.99757 * 0.50580 * 25 24 23 27 27 C 1.38241 * 119.99773 * 359.74570 * 26 25 24 28 28 C 1.38226 * 120.00094 * 89.99488 * 23 22 20 29 29 H 0.96998 * 120.00158 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47308 * 59.99627 * 9 7 2 31 31 H 1.09000 * 109.46976 * 299.99772 * 9 7 2 32 32 H 1.09005 * 109.47121 * 30.00515 * 11 10 9 33 33 H 1.08997 * 109.47160 * 150.00168 * 11 10 9 34 34 H 1.09002 * 115.54589 * 29.32423 * 12 11 10 35 35 H 1.08995 * 117.49876 * 359.97438 * 13 12 11 36 36 H 1.09002 * 117.49846 * 145.02378 * 13 12 11 37 37 H 1.09007 * 117.49671 * 214.97834 * 14 12 11 38 38 H 1.09002 * 117.50190 * 359.97438 * 14 12 11 39 39 H 1.09000 * 109.47318 * 299.99141 * 17 15 10 40 40 H 1.09000 * 109.47161 * 59.99772 * 17 15 10 41 41 H 1.09004 * 109.46930 * 299.99901 * 18 17 15 42 42 H 1.09004 * 109.47059 * 59.99503 * 18 17 15 43 43 H 0.97008 * 119.99406 * 359.97438 * 19 18 17 44 44 H 1.08996 * 109.47390 * 299.99902 * 22 20 19 45 45 H 1.09004 * 109.47662 * 59.99777 * 22 20 19 46 46 H 1.08006 * 120.00418 * 359.97438 * 24 23 22 47 47 H 1.07999 * 120.00366 * 180.22420 * 25 24 23 48 48 H 1.07991 * 119.99681 * 179.72599 * 26 25 24 49 49 H 1.07994 * 119.99463 * 179.97438 * 27 26 25 50 50 H 1.08004 * 120.00431 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0013 11 6 4.2436 -3.2672 1.2668 12 6 5.6885 -3.0272 1.7093 13 6 6.6119 -4.2440 1.7966 14 6 6.1085 -3.5722 3.0758 15 6 4.2250 -3.2093 -1.1691 16 8 4.0229 -2.6366 -2.2189 17 6 4.7279 -4.6300 -1.1704 18 6 4.8978 -5.1095 -2.6133 19 7 5.3860 -6.4907 -2.6147 20 6 5.6110 -7.1248 -3.7825 21 8 5.4089 -6.5522 -4.8323 22 6 6.1138 -8.5454 -3.7837 23 6 6.2811 -9.0179 -5.2050 24 6 5.2310 -9.6390 -5.8550 25 6 5.3828 -10.0679 -7.1603 26 6 6.5881 -9.8852 -7.8122 27 6 7.6398 -9.2687 -7.1603 28 6 7.4862 -8.8350 -5.8568 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.6807 0.8905 31 1 3.8752 -0.6796 -0.8895 32 1 3.5625 -2.8839 2.0266 33 1 4.0767 -4.3362 1.1353 34 1 6.1282 -2.0834 1.3870 35 1 6.1900 -5.2155 1.5392 36 1 7.6595 -4.1008 1.5317 37 1 6.8250 -2.9870 3.6524 38 1 5.3555 -4.1013 3.6598 39 1 5.6880 -4.6760 -0.6565 40 1 4.0101 -5.2699 -0.6573 41 1 3.9374 -5.0635 -3.1269 42 1 5.6154 -4.4695 -3.1268 43 1 5.5481 -6.9486 -1.7750 44 1 7.0739 -8.5915 -3.2698 45 1 5.3961 -9.1855 -3.2706 46 1 4.2908 -9.7860 -5.3441 47 1 4.5613 -10.5499 -7.6694 48 1 6.7081 -10.2242 -8.8304 49 1 8.5815 -9.1263 -7.6695 50 1 8.3082 -8.3540 -5.3475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349403285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:54 Heat of formation + Delta-G solvation = -25.604376 kcal Electronic energy + Delta-G solvation = -28996.568155 eV Core-core repulsion = 24989.348476 eV Total energy + Delta-G solvation = -4007.219680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.20965 -39.46943 -38.77079 -37.34249 -35.24588 -34.51270 -33.15200 -32.52662 -31.08436 -31.00066 -28.60474 -27.69860 -26.33919 -24.05235 -22.79041 -22.43560 -22.10476 -21.58721 -20.84066 -20.49919 -18.45906 -17.23507 -17.11813 -16.94180 -16.74884 -16.06014 -15.79894 -15.48382 -15.39410 -15.13266 -14.78319 -14.65785 -14.12591 -14.04704 -13.77254 -13.60537 -13.30456 -13.09754 -12.86704 -12.63422 -12.61580 -12.30728 -12.20063 -11.92770 -11.60101 -11.56580 -11.46880 -11.35075 -11.31807 -11.20857 -10.93711 -10.58277 -10.39787 -10.14980 -10.03601 -9.95880 -9.55198 -9.12261 -9.08908 -9.08390 -8.91449 -8.59888 -7.79425 -6.09813 -4.08729 1.12406 1.22947 2.56788 2.98836 3.25980 3.28635 3.34335 3.36723 3.60688 3.69993 3.90944 4.37120 4.38684 4.58025 4.68492 4.74791 4.79914 4.87761 4.89750 4.89915 4.96636 4.98501 5.14564 5.16198 5.19686 5.25123 5.30470 5.33056 5.42975 5.53123 5.55026 5.72734 5.77730 5.83399 5.83899 5.95087 5.99151 6.04665 6.10884 6.24624 6.30548 6.31571 6.35524 6.36904 6.67086 6.80019 6.92122 7.28639 7.38515 7.59374 8.15384 8.18125 8.44812 8.88359 8.94621 9.50328 11.03491 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.002113 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.842369 B =13248.110156 C =14693.153728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.072 3.928 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.529 4.529 8 H 0.074 0.926 9 C 0.216 3.784 10 N -0.589 5.589 11 C 0.142 3.858 12 C -0.168 4.168 13 C -0.185 4.185 14 C -0.175 4.175 15 C 0.514 3.486 16 O -0.535 6.535 17 C -0.153 4.153 18 C 0.135 3.865 19 N -0.732 5.732 20 C 0.510 3.490 21 O -0.526 6.526 22 C -0.102 4.102 23 C -0.066 4.066 24 C -0.105 4.105 25 C -0.120 4.120 26 C -0.122 4.122 27 C -0.120 4.120 28 C -0.106 4.106 29 H 0.265 0.735 30 H 0.030 0.970 31 H 0.036 0.964 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.398 0.602 44 H 0.102 0.898 45 H 0.103 0.897 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.120 0.880 49 H 0.121 0.879 50 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.198 -21.736 -1.307 27.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.095 3.905 10 N -0.320 5.320 11 C 0.018 3.982 12 C -0.187 4.187 13 C -0.222 4.222 14 C -0.213 4.213 15 C 0.300 3.700 16 O -0.412 6.412 17 C -0.194 4.194 18 C 0.011 3.989 19 N -0.385 5.385 20 C 0.296 3.704 21 O -0.401 6.401 22 C -0.142 4.142 23 C -0.066 4.066 24 C -0.123 4.123 25 C -0.138 4.138 26 C -0.140 4.140 27 C -0.138 4.138 28 C -0.124 4.124 29 H 0.075 0.925 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.108 0.892 33 H 0.089 0.911 34 H 0.125 0.875 35 H 0.112 0.888 36 H 0.109 0.891 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.232 0.768 44 H 0.121 0.879 45 H 0.121 0.879 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.138 0.862 49 H 0.139 0.861 50 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 16.751 -20.840 -2.642 26.868 hybrid contribution 0.360 0.770 0.631 1.058 sum 17.111 -20.071 -2.011 26.451 Atomic orbital electron populations 1.69891 1.06189 1.27003 1.50421 1.24858 0.94766 0.98960 0.94437 0.86856 0.80142 0.83822 0.78895 1.19891 1.21083 1.19085 1.21306 0.89152 0.94807 1.51456 0.90771 1.19672 0.95688 0.77704 0.97394 1.47850 1.64046 1.15859 1.04253 1.21050 0.93115 0.96806 0.87264 1.22948 0.96900 0.98464 1.00403 1.23052 0.99615 0.96976 1.02548 1.22906 1.03607 1.04080 0.90694 1.20018 0.78396 0.87485 0.84136 1.90716 1.51893 1.67729 1.30885 1.21880 1.03326 0.96211 0.97944 1.21073 1.01245 0.80773 0.95799 1.46033 1.68607 1.15402 1.08453 1.20492 0.78008 0.88127 0.83792 1.90772 1.50470 1.67638 1.31206 1.20688 1.03834 0.94003 0.95716 1.19273 0.94272 0.98331 0.94745 1.21002 0.98004 0.98225 0.95095 1.21113 0.97562 1.00282 0.94796 1.21146 0.93527 0.99549 0.99784 1.21101 0.99034 0.98857 0.94828 1.20978 0.97065 0.99222 0.95103 0.92548 0.95168 0.94554 0.89194 0.91116 0.87497 0.88838 0.89149 0.88981 0.88599 0.88618 0.88835 0.90406 0.90616 0.76842 0.87940 0.87891 0.86190 0.86078 0.86222 0.86125 0.86266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.57 13.96 55.43 0.77 -26.79 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 7 C -0.53 -14.98 9.94 -34.44 -0.34 -15.32 16 8 H 0.07 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.22 5.16 4.23 -5.19 -0.02 5.13 16 10 N -0.59 -11.44 2.46 -175.06 -0.43 -11.87 16 11 C 0.14 2.05 5.49 -4.04 -0.02 2.03 16 12 C -0.17 -2.01 5.95 -90.62 -0.54 -2.55 16 13 C -0.18 -1.65 9.18 -26.73 -0.25 -1.90 16 14 C -0.18 -1.66 10.25 -26.73 -0.27 -1.94 16 15 C 0.51 9.91 7.67 -10.98 -0.08 9.83 16 16 O -0.54 -12.96 15.56 5.56 0.09 -12.87 16 17 C -0.15 -1.97 4.37 -27.88 -0.12 -2.09 16 18 C 0.13 1.88 4.96 -4.04 -0.02 1.86 16 19 N -0.73 -7.40 5.56 -60.29 -0.33 -7.74 16 20 C 0.51 6.04 7.82 -10.99 -0.09 5.95 16 21 O -0.53 -8.99 16.03 5.56 0.09 -8.90 16 22 C -0.10 -0.79 5.83 -29.04 -0.17 -0.96 16 23 C -0.07 -0.65 4.37 -104.63 -0.46 -1.11 16 24 C -0.11 -1.04 9.70 -39.58 -0.38 -1.43 16 25 C -0.12 -1.11 10.05 -39.58 -0.40 -1.50 16 26 C -0.12 -1.09 10.05 -39.58 -0.40 -1.48 16 27 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 28 C -0.11 -1.03 9.70 -39.59 -0.38 -1.41 16 29 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 30 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 31 H 0.04 0.94 6.85 -51.93 -0.36 0.58 16 32 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 33 H 0.07 0.83 6.17 -51.93 -0.32 0.51 16 34 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.09 0.69 7.87 -51.93 -0.41 0.28 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.09 0.82 8.14 -51.92 -0.42 0.39 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.98 6.84 -51.93 -0.36 0.62 16 40 H 0.09 1.02 7.40 -51.93 -0.38 0.63 16 41 H 0.08 1.31 8.10 -51.93 -0.42 0.89 16 42 H 0.08 1.21 8.10 -51.93 -0.42 0.79 16 43 H 0.40 2.46 8.47 -40.82 -0.35 2.11 16 44 H 0.10 0.53 8.09 -51.93 -0.42 0.11 16 45 H 0.10 0.55 8.08 -51.93 -0.42 0.14 16 46 H 0.12 1.02 8.06 -52.48 -0.42 0.59 16 47 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 49 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 50 H 0.12 0.97 8.06 -52.48 -0.42 0.55 16 LS Contribution 417.28 15.07 6.29 6.29 Total: -1.00 -37.71 417.28 -10.67 -48.38 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -8.04 Total: 3.02 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -4.44 Total: -6.39 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.01 Total: -46.41 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: 0.18 Total: -21.77 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.71 -10.67 -48.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349403285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.778 kcal (2) G-P(sol) polarization free energy of solvation -37.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds