Wall clock time and date at job start Wed Apr 1 2020 03:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 120.00130 * 2 1 4 4 H 1.48504 * 109.47019 * 270.00442 * 3 2 1 5 5 H 1.48502 * 109.46830 * 29.99742 * 3 2 1 6 6 H 1.48497 * 109.47160 * 149.99953 * 3 2 1 7 7 C 1.37881 * 120.00183 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99768 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00011 * 180.02562 * 7 2 1 10 10 N 1.46496 * 109.46871 * 180.02562 * 9 7 2 11 11 C 1.46504 * 119.99884 * 269.99501 * 10 9 7 12 12 C 1.52999 * 109.47507 * 270.00494 * 11 10 9 13 13 C 1.53003 * 117.49748 * 243.62506 * 12 11 10 14 14 C 1.52992 * 117.50002 * 174.99956 * 12 11 10 15 15 C 1.34777 * 120.00258 * 90.00155 * 10 9 7 16 16 O 1.21279 * 120.00166 * 359.97438 * 15 10 9 17 17 C 1.50706 * 119.99762 * 179.97438 * 15 10 9 18 18 C 1.53002 * 109.46925 * 179.97438 * 17 15 10 19 19 N 1.46496 * 109.47421 * 180.02562 * 18 17 15 20 20 C 1.34777 * 120.00258 * 180.02562 * 19 18 17 21 21 O 1.21279 * 120.00166 * 359.97438 * 20 19 18 22 22 C 1.50696 * 119.99757 * 179.97438 * 20 19 18 23 23 C 1.50702 * 109.47168 * 179.97438 * 22 20 19 24 24 C 1.38234 * 119.99970 * 269.73107 * 23 22 20 25 25 C 1.38240 * 120.00086 * 179.76246 * 24 23 22 26 26 C 1.38237 * 119.99757 * 0.50580 * 25 24 23 27 27 C 1.38241 * 119.99773 * 359.74570 * 26 25 24 28 28 C 1.38226 * 120.00094 * 89.99488 * 23 22 20 29 29 H 0.96998 * 120.00158 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47308 * 59.99627 * 9 7 2 31 31 H 1.09000 * 109.46976 * 299.99772 * 9 7 2 32 32 H 1.09005 * 109.47121 * 30.00515 * 11 10 9 33 33 H 1.08997 * 109.47160 * 150.00168 * 11 10 9 34 34 H 1.09002 * 115.54589 * 29.32423 * 12 11 10 35 35 H 1.08995 * 117.49876 * 359.97438 * 13 12 11 36 36 H 1.09002 * 117.49846 * 145.02378 * 13 12 11 37 37 H 1.09007 * 117.49671 * 214.97834 * 14 12 11 38 38 H 1.09002 * 117.50190 * 359.97438 * 14 12 11 39 39 H 1.09000 * 109.47318 * 299.99141 * 17 15 10 40 40 H 1.09000 * 109.47161 * 59.99772 * 17 15 10 41 41 H 1.09004 * 109.46930 * 299.99901 * 18 17 15 42 42 H 1.09004 * 109.47059 * 59.99503 * 18 17 15 43 43 H 0.97008 * 119.99406 * 359.97438 * 19 18 17 44 44 H 1.08996 * 109.47390 * 299.99902 * 22 20 19 45 45 H 1.09004 * 109.47662 * 59.99777 * 22 20 19 46 46 H 1.08006 * 120.00418 * 359.97438 * 24 23 22 47 47 H 1.07999 * 120.00366 * 180.22420 * 25 24 23 48 48 H 1.07991 * 119.99681 * 179.72599 * 26 25 24 49 49 H 1.07994 * 119.99463 * 179.97438 * 27 26 25 50 50 H 1.08004 * 120.00431 * 0.02562 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1940 0.0000 10 7 3.9999 -2.5752 -0.0013 11 6 4.2436 -3.2672 1.2668 12 6 5.6885 -3.0272 1.7093 13 6 6.6119 -4.2440 1.7966 14 6 6.1085 -3.5722 3.0758 15 6 4.2250 -3.2093 -1.1691 16 8 4.0229 -2.6366 -2.2189 17 6 4.7279 -4.6300 -1.1704 18 6 4.8978 -5.1095 -2.6133 19 7 5.3860 -6.4907 -2.6147 20 6 5.6110 -7.1248 -3.7825 21 8 5.4089 -6.5522 -4.8323 22 6 6.1138 -8.5454 -3.7837 23 6 6.2811 -9.0179 -5.2050 24 6 5.2310 -9.6390 -5.8550 25 6 5.3828 -10.0679 -7.1603 26 6 6.5881 -9.8852 -7.8122 27 6 7.6398 -9.2687 -7.1603 28 6 7.4862 -8.8350 -5.8568 29 1 -0.4850 0.8400 0.0004 30 1 3.8746 -0.6807 0.8905 31 1 3.8752 -0.6796 -0.8895 32 1 3.5625 -2.8839 2.0266 33 1 4.0767 -4.3362 1.1353 34 1 6.1282 -2.0834 1.3870 35 1 6.1900 -5.2155 1.5392 36 1 7.6595 -4.1008 1.5317 37 1 6.8250 -2.9870 3.6524 38 1 5.3555 -4.1013 3.6598 39 1 5.6880 -4.6760 -0.6565 40 1 4.0101 -5.2699 -0.6573 41 1 3.9374 -5.0635 -3.1269 42 1 5.6154 -4.4695 -3.1268 43 1 5.5481 -6.9486 -1.7750 44 1 7.0739 -8.5915 -3.2698 45 1 5.3961 -9.1855 -3.2706 46 1 4.2908 -9.7860 -5.3441 47 1 4.5613 -10.5499 -7.6694 48 1 6.7081 -10.2242 -8.8304 49 1 8.5815 -9.1263 -7.6695 50 1 8.3082 -8.3540 -5.3475 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349403285.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:51:53 Heat of formation + Delta-G solvation = -50.778273 kcal Electronic energy + Delta-G solvation = -28997.659777 eV Core-core repulsion = 24989.348476 eV Total energy + Delta-G solvation = -4008.311302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.19850 -40.76397 -39.58500 -38.37329 -36.45519 -35.97999 -34.60372 -33.87251 -32.21861 -31.74001 -30.28755 -28.54411 -27.63485 -25.49865 -23.59855 -23.45528 -23.11594 -22.56548 -21.83520 -21.38670 -19.85304 -19.09607 -18.29621 -18.08600 -17.62602 -17.11839 -17.08871 -16.63238 -16.48637 -16.04758 -15.93739 -15.69015 -15.56014 -15.02520 -14.73597 -14.71781 -14.43393 -14.24814 -14.17966 -13.89155 -13.81792 -13.52209 -13.34634 -13.04425 -12.89996 -12.86234 -12.50736 -12.46719 -12.42386 -12.19301 -12.02665 -11.97916 -11.84006 -11.77329 -11.21609 -11.08149 -10.89116 -10.84364 -10.57447 -10.14162 -9.77404 -9.60611 -9.43388 -8.35381 -6.39791 0.43945 0.54680 1.29996 1.34609 1.42257 1.67130 1.76829 1.97504 2.28961 2.45358 2.95517 2.99203 3.03029 3.59877 3.71625 3.82015 3.94564 3.98430 4.05137 4.10913 4.12186 4.19232 4.23529 4.30046 4.33055 4.43870 4.49999 4.63045 4.67929 4.75681 4.76957 4.79577 4.82235 4.88467 4.91408 4.95865 4.98779 5.14232 5.16346 5.18842 5.37121 5.39613 5.39864 5.45260 5.58540 5.61756 5.65012 5.68980 6.15771 6.22176 6.59076 6.61529 6.69531 7.20451 7.31927 7.40465 8.81354 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013125 B = 0.002113 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2132.842369 B =13248.110156 C =14693.153728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.010 3.990 3 Si 0.945 3.055 4 H -0.279 1.279 5 H -0.274 1.274 6 H -0.239 1.239 7 C -0.533 4.533 8 H 0.031 0.969 9 C 0.225 3.775 10 N -0.594 5.594 11 C 0.139 3.861 12 C -0.194 4.194 13 C -0.162 4.162 14 C -0.166 4.166 15 C 0.500 3.500 16 O -0.598 6.598 17 C -0.130 4.130 18 C 0.145 3.855 19 N -0.711 5.711 20 C 0.507 3.493 21 O -0.587 6.587 22 C -0.091 4.091 23 C -0.083 4.083 24 C -0.125 4.125 25 C -0.134 4.134 26 C -0.133 4.133 27 C -0.133 4.133 28 C -0.122 4.122 29 H 0.268 0.732 30 H 0.047 0.953 31 H 0.015 0.985 32 H 0.072 0.928 33 H 0.105 0.895 34 H 0.085 0.915 35 H 0.120 0.880 36 H 0.100 0.900 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.136 0.864 40 H 0.126 0.874 41 H 0.039 0.961 42 H 0.049 0.951 43 H 0.423 0.577 44 H 0.137 0.863 45 H 0.133 0.867 46 H 0.128 0.872 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.076 -23.830 0.843 31.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.188 4.188 3 Si 0.768 3.232 4 H -0.205 1.205 5 H -0.199 1.199 6 H -0.162 1.162 7 C -0.572 4.572 8 H 0.050 0.950 9 C 0.103 3.897 10 N -0.324 5.324 11 C 0.017 3.983 12 C -0.213 4.213 13 C -0.199 4.199 14 C -0.204 4.204 15 C 0.289 3.711 16 O -0.479 6.479 17 C -0.169 4.169 18 C 0.019 3.981 19 N -0.365 5.365 20 C 0.295 3.705 21 O -0.466 6.466 22 C -0.130 4.130 23 C -0.084 4.084 24 C -0.143 4.143 25 C -0.152 4.152 26 C -0.151 4.151 27 C -0.151 4.151 28 C -0.140 4.140 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.033 0.967 32 H 0.090 0.910 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.138 0.862 36 H 0.118 0.882 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.154 0.846 40 H 0.144 0.856 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.261 0.739 44 H 0.155 0.845 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.154 0.846 48 H 0.156 0.844 49 H 0.156 0.844 50 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.668 -23.004 -0.391 30.268 hybrid contribution -0.588 1.342 -0.061 1.467 sum 19.080 -21.662 -0.452 28.870 Atomic orbital electron populations 1.70040 1.08103 1.28254 1.52006 1.25834 0.95678 1.03250 0.94025 0.85757 0.79931 0.78679 0.78834 1.20502 1.19896 1.16183 1.21551 0.91546 0.93236 1.50825 0.95024 1.19279 0.92676 0.80920 0.96856 1.47927 1.63419 1.14554 1.06518 1.21310 0.94676 0.97961 0.84358 1.22652 0.95718 0.99508 1.03430 1.23233 0.99456 0.96364 1.00836 1.23009 1.03622 1.03573 0.90186 1.21163 0.77260 0.89681 0.82990 1.90686 1.54547 1.69631 1.33070 1.21777 1.05741 0.91706 0.97723 1.20669 0.98758 0.82667 0.95966 1.45751 1.67527 1.13688 1.09534 1.21307 0.76715 0.89464 0.82998 1.90756 1.53116 1.69300 1.33471 1.20740 1.06172 0.90913 0.95184 1.19597 0.94325 0.98408 0.96064 1.21290 0.98583 0.98723 0.95666 1.21425 0.98330 1.00435 0.94997 1.21465 0.93442 0.99423 1.00760 1.21433 0.99936 0.98670 0.95028 1.21287 0.97664 0.99451 0.95615 0.92307 0.93488 0.96737 0.91000 0.87719 0.89647 0.86227 0.88150 0.88435 0.87576 0.84611 0.85648 0.94235 0.93230 0.73856 0.84533 0.84895 0.85364 0.84635 0.84382 0.84422 0.85023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.10 13.96 21.45 0.30 -59.80 16 2 C 0.01 0.61 5.47 84.66 0.46 1.07 16 3 Si 0.94 45.15 27.47 68.60 1.88 47.03 16 4 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.27 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 7 C -0.53 -31.40 9.94 25.60 0.25 -31.15 16 8 H 0.03 2.07 8.06 -2.91 -0.02 2.04 16 9 C 0.23 10.96 4.23 85.63 0.36 11.33 16 10 N -0.59 -23.08 2.46 -826.14 -2.03 -25.11 16 11 C 0.14 3.75 5.49 86.38 0.47 4.23 16 12 C -0.19 -4.10 5.95 -10.80 -0.06 -4.16 16 13 C -0.16 -2.08 9.18 30.60 0.28 -1.79 16 14 C -0.17 -2.51 10.25 30.59 0.31 -2.20 16 15 C 0.50 19.43 7.67 87.66 0.67 20.10 16 16 O -0.60 -30.42 15.56 -3.03 -0.05 -30.47 16 17 C -0.13 -3.02 4.37 29.85 0.13 -2.89 16 18 C 0.14 3.98 4.96 86.38 0.43 4.41 16 19 N -0.71 -12.59 5.56 -463.06 -2.57 -15.16 16 20 C 0.51 11.24 7.82 87.66 0.69 11.93 16 21 O -0.59 -20.46 16.03 -3.03 -0.05 -20.51 16 22 C -0.09 -1.13 5.83 29.10 0.17 -0.96 16 23 C -0.08 -1.55 4.37 -19.87 -0.09 -1.63 16 24 C -0.12 -2.38 9.70 22.27 0.22 -2.16 16 25 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 26 C -0.13 -2.28 10.05 22.27 0.22 -2.06 16 27 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 28 C -0.12 -2.24 9.70 22.27 0.22 -2.02 16 29 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.05 2.12 7.13 -2.39 -0.02 2.11 16 31 H 0.01 0.77 6.85 -2.39 -0.02 0.76 16 32 H 0.07 2.18 8.07 -2.38 -0.02 2.16 16 33 H 0.10 2.05 6.17 -2.39 -0.01 2.03 16 34 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.12 0.94 7.87 -2.39 -0.02 0.92 16 36 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.14 2.12 6.84 -2.39 -0.02 2.10 16 40 H 0.13 2.21 7.40 -2.39 -0.02 2.19 16 41 H 0.04 1.40 8.10 -2.38 -0.02 1.38 16 42 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 43 H 0.42 3.19 8.47 -92.70 -0.79 2.41 16 44 H 0.14 0.79 8.09 -2.39 -0.02 0.77 16 45 H 0.13 0.88 8.08 -2.39 -0.02 0.86 16 46 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 47 H 0.14 1.88 8.06 -2.91 -0.02 1.85 16 48 H 0.14 1.70 8.06 -2.92 -0.02 1.68 16 49 H 0.14 1.76 8.06 -2.91 -0.02 1.74 16 50 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 Total: -1.00 -91.50 417.28 2.77 -88.74 By element: Atomic # 1 Polarization: 17.43 SS G_CDS: 0.09 Total: 17.53 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: 5.19 Total: -2.25 kcal Atomic # 7 Polarization: -95.77 SS G_CDS: -4.30 Total: -100.07 kcal Atomic # 8 Polarization: -50.88 SS G_CDS: -0.10 Total: -50.98 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 1.88 Total: 47.03 kcal Total: -91.50 2.77 -88.74 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349403285.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.958 kcal (2) G-P(sol) polarization free energy of solvation -91.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds