Wall clock time and date at job start Wed Apr 1 2020 03:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86798 * 120.00028 * 2 1 4 4 H 1.48503 * 109.47291 * 269.99895 * 3 2 1 5 5 H 1.48499 * 109.47159 * 149.99791 * 3 2 1 6 6 H 1.48507 * 109.47082 * 29.99760 * 3 2 1 7 7 C 1.40045 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00102 * 198.44675 * 7 2 1 9 9 C 1.46377 * 119.99959 * 18.45061 * 7 2 1 10 10 O 1.21684 * 120.00121 * 20.45003 * 9 7 2 11 11 N 1.34769 * 119.99877 * 200.44531 * 9 7 2 12 12 C 1.46926 * 120.63374 * 355.13614 * 11 9 7 13 13 C 1.53196 * 108.77728 * 126.36393 * 12 11 9 14 14 C 1.53046 * 109.30818 * 54.64005 * 13 12 11 15 15 C 1.53044 * 109.53554 * 298.63322 * 14 13 12 16 16 H 1.09001 * 109.49772 * 301.41503 * 15 14 13 17 17 N 1.46503 * 109.49278 * 181.35142 * 15 14 13 18 18 C 1.34784 * 119.99807 * 154.99985 * 17 15 14 19 19 O 1.21278 * 119.99753 * 0.02562 * 18 17 15 20 20 C 1.50691 * 119.99934 * 180.02562 * 18 17 15 21 21 C 1.53006 * 109.47253 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47395 * 179.97438 * 21 20 18 23 23 C 1.50699 * 109.46988 * 179.97438 * 22 21 20 24 24 C 1.38233 * 119.99846 * 269.72510 * 23 22 21 25 25 C 1.38240 * 119.99887 * 179.81215 * 24 23 22 26 26 C 1.38230 * 119.99755 * 0.42089 * 25 24 23 27 27 C 1.38237 * 120.00135 * 359.80981 * 26 25 24 28 28 C 1.38231 * 120.00183 * 0.02562 * 27 26 25 29 29 C 1.46933 * 120.63214 * 174.85333 * 11 9 7 30 30 H 0.97001 * 120.00177 * 185.78686 * 1 2 3 31 31 H 1.09000 * 109.59084 * 246.15184 * 12 11 9 32 32 H 1.09003 * 109.58523 * 6.43803 * 12 11 9 33 33 H 1.09003 * 109.50063 * 174.58608 * 13 12 11 34 34 H 1.08995 * 109.49841 * 294.68670 * 13 12 11 35 35 H 1.09000 * 109.46330 * 58.65582 * 14 13 12 36 36 H 1.09007 * 109.45707 * 178.61351 * 14 13 12 37 37 H 0.96996 * 120.00231 * 335.00061 * 17 15 14 38 38 H 1.08998 * 109.47403 * 299.99975 * 20 18 17 39 39 H 1.09001 * 109.47724 * 59.99979 * 20 18 17 40 40 H 1.08998 * 109.46791 * 300.00221 * 21 20 18 41 41 H 1.09001 * 109.46878 * 59.99332 * 21 20 18 42 42 H 1.09005 * 109.46976 * 299.99914 * 22 21 20 43 43 H 1.08997 * 109.46775 * 59.99555 * 22 21 20 44 44 H 1.08003 * 120.00054 * 359.97438 * 24 23 22 45 45 H 1.08000 * 119.99873 * 180.20696 * 25 24 23 46 46 H 1.08005 * 119.99960 * 179.79115 * 26 25 24 47 47 H 1.08001 * 119.99887 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.00101 * 179.97438 * 28 27 26 49 49 H 1.08998 * 109.58194 * 353.42639 * 29 11 9 50 50 H 1.08998 * 109.58366 * 113.84438 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 3.5383 1.4402 0.7001 6 1 1.4381 2.6527 0.7000 7 6 2.0069 -1.2128 0.0005 8 1 3.0453 -1.2368 0.2965 9 6 1.3314 -2.4481 -0.4001 10 8 0.3185 -2.3971 -1.0724 11 7 1.8315 -3.6419 -0.0245 12 6 3.1095 -3.7251 0.6957 13 6 2.8984 -4.5273 1.9837 14 6 2.2816 -5.8849 1.6389 15 6 0.9201 -5.6740 0.9725 16 1 0.2681 -5.1168 1.6452 17 7 0.3162 -6.9746 0.6722 18 6 -1.0226 -7.0873 0.5651 19 8 -1.7273 -6.1120 0.7169 20 6 -1.6439 -8.4251 0.2567 21 6 -3.1653 -8.2777 0.1898 22 6 -3.7961 -9.6359 -0.1239 23 6 -5.2946 -9.4907 -0.1891 24 6 -6.0563 -9.6659 0.9510 25 6 -7.4306 -9.5289 0.8920 26 6 -8.0439 -9.2253 -0.3090 27 6 -7.2826 -9.0548 -1.4502 28 6 -5.9081 -9.1884 -1.3905 29 6 1.1060 -4.8845 -0.3218 30 1 -0.4850 -0.8358 0.0847 31 1 3.8492 -4.2254 0.0708 32 1 3.4569 -2.7214 0.9407 33 1 3.8573 -4.6787 2.4793 34 1 2.2278 -3.9808 2.6468 35 1 2.9411 -6.4206 0.9561 36 1 2.1531 -6.4675 2.5513 37 1 0.8798 -7.7545 0.5504 38 1 -1.2717 -8.7862 -0.7020 39 1 -1.3815 -9.1367 1.0396 40 1 -3.5378 -7.9164 1.1483 41 1 -3.4273 -7.5662 -0.5933 42 1 -3.4235 -9.9967 -1.0826 43 1 -3.5340 -10.3476 0.6589 44 1 -5.5774 -9.9073 1.8885 45 1 -8.0254 -9.6626 1.7835 46 1 -9.1179 -9.1216 -0.3559 47 1 -7.7619 -8.8179 -2.3886 48 1 -5.3134 -9.0555 -2.2821 49 1 0.1308 -4.6456 -0.7459 50 1 1.6791 -5.4812 -1.0315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358844484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:05 Heat of formation + Delta-G solvation = -79.543411 kcal Electronic energy + Delta-G solvation = -29227.129564 eV Core-core repulsion = 25217.570913 eV Total energy + Delta-G solvation = -4009.558652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -39.99293 -39.46040 -38.43762 -36.34077 -35.07431 -34.06236 -32.51386 -31.66113 -31.27639 -31.09218 -29.62319 -27.11981 -26.01375 -24.18630 -23.34979 -22.78565 -22.12929 -20.97851 -20.73870 -20.11795 -19.14846 -17.27225 -17.19736 -16.67886 -16.07825 -15.86838 -15.47066 -15.27637 -15.21916 -14.67627 -14.25920 -13.97806 -13.80581 -13.71069 -13.67462 -13.47998 -13.35081 -13.11703 -12.99275 -12.60253 -12.32006 -12.19852 -12.00257 -11.84672 -11.67596 -11.55427 -11.28415 -11.09666 -11.08520 -10.82349 -10.81868 -10.66622 -10.42364 -10.22233 -10.21168 -9.95970 -9.66023 -9.12528 -9.02331 -8.88982 -8.71204 -7.71076 -7.42826 -6.70219 -4.65115 1.14611 1.19647 2.77411 3.18542 3.31293 3.33705 3.50879 3.58463 4.19943 4.45537 4.48560 4.52736 4.58662 4.71147 4.79119 4.87089 4.89452 4.94622 5.00966 5.09677 5.16320 5.25274 5.29750 5.38216 5.42843 5.44199 5.51244 5.54697 5.59187 5.70298 5.80192 5.80930 5.84718 5.92576 5.96619 6.06322 6.19993 6.21427 6.25966 6.30988 6.34200 6.43207 6.44420 6.47532 6.60494 6.71486 6.80391 7.45744 7.61361 7.91178 8.06458 8.38217 8.41005 8.89762 9.43434 10.37083 10.61112 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.002080 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.405266 B =13458.538704 C =15026.609825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.051 3.949 3 Si 1.077 2.923 4 H -0.279 1.279 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.618 4.618 8 H 0.071 0.929 9 C 0.559 3.441 10 O -0.616 6.616 11 N -0.636 5.636 12 C 0.119 3.881 13 C -0.131 4.131 14 C -0.120 4.120 15 C 0.131 3.869 16 H 0.088 0.912 17 N -0.727 5.727 18 C 0.505 3.495 19 O -0.527 6.527 20 C -0.138 4.138 21 C -0.100 4.100 22 C -0.081 4.081 23 C -0.079 4.079 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.127 4.127 27 C -0.118 4.118 28 C -0.117 4.117 29 C 0.114 3.886 30 H 0.303 0.697 31 H 0.042 0.958 32 H 0.098 0.902 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.062 0.938 37 H 0.396 0.604 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.072 0.928 44 H 0.121 0.879 45 H 0.120 0.880 46 H 0.119 0.881 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.087 0.913 50 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 -23.270 3.497 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.172 4.172 3 Si 0.902 3.098 4 H -0.205 1.205 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.654 4.654 8 H 0.089 0.911 9 C 0.368 3.632 10 O -0.504 6.504 11 N -0.372 5.372 12 C -0.006 4.006 13 C -0.170 4.170 14 C -0.158 4.158 15 C 0.025 3.975 16 H 0.107 0.893 17 N -0.379 5.379 18 C 0.291 3.709 19 O -0.402 6.402 20 C -0.178 4.178 21 C -0.138 4.138 22 C -0.118 4.118 23 C -0.079 4.079 24 C -0.136 4.136 25 C -0.137 4.137 26 C -0.145 4.145 27 C -0.136 4.136 28 C -0.135 4.135 29 C -0.011 4.011 30 H 0.118 0.882 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.229 0.771 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.139 0.861 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.105 0.895 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.966 -20.914 3.181 21.730 hybrid contribution 0.601 -2.252 0.037 2.331 sum -4.365 -23.166 3.219 23.793 Atomic orbital electron populations 1.70107 1.08176 1.35047 1.30332 1.26619 0.95899 1.03060 0.91573 0.83512 0.74850 0.73893 0.77577 1.20517 1.20666 1.20524 1.21828 0.99809 0.92132 1.51595 0.91089 1.18443 0.83573 0.82216 0.78949 1.90527 1.29413 1.86611 1.43809 1.48038 1.22310 1.05525 1.61343 1.21467 0.86385 1.01538 0.91177 1.21910 1.00687 0.95249 0.99152 1.21750 0.95518 0.98438 1.00098 1.21328 0.94277 0.83644 0.98212 0.89346 1.46066 1.06949 1.11554 1.73360 1.20738 0.82267 0.91094 0.76795 1.90797 1.61231 1.39650 1.48513 1.21681 0.97196 0.95252 1.03718 1.21327 0.92251 0.96333 1.03859 1.20650 0.90729 0.97822 1.02627 1.19894 0.95640 0.98887 0.93470 1.21063 0.93889 1.00672 0.97947 1.21146 0.94825 0.99923 0.97855 1.21147 0.99843 1.00514 0.93037 1.21164 0.94068 0.99896 0.98514 1.21092 0.94781 0.99974 0.97610 1.21362 0.98871 0.86468 0.94440 0.88201 0.93978 0.88422 0.91221 0.91291 0.91779 0.91914 0.77059 0.88944 0.89068 0.90951 0.90776 0.90861 0.90944 0.86142 0.86186 0.86263 0.86120 0.86035 0.89485 0.94174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -25.32 13.24 55.55 0.74 -24.59 16 2 C 0.05 1.46 5.36 -17.37 -0.09 1.37 16 3 Si 1.08 23.97 29.97 -169.99 -5.09 18.88 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 6 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.62 -17.63 8.62 -35.63 -0.31 -17.94 16 8 H 0.07 1.85 6.02 -52.49 -0.32 1.54 16 9 C 0.56 16.31 7.21 -12.99 -0.09 16.21 16 10 O -0.62 -20.41 14.21 5.20 0.07 -20.33 16 11 N -0.64 -14.80 2.98 -174.69 -0.52 -15.32 16 12 C 0.12 2.18 6.35 -3.71 -0.02 2.15 16 13 C -0.13 -1.92 6.08 -26.61 -0.16 -2.09 16 14 C -0.12 -1.55 5.36 -26.68 -0.14 -1.70 16 15 C 0.13 2.15 2.59 -68.03 -0.18 1.98 16 16 H 0.09 1.79 7.58 -51.93 -0.39 1.39 16 17 N -0.73 -9.31 5.08 -53.91 -0.27 -9.59 16 18 C 0.51 7.30 7.80 -10.99 -0.09 7.22 16 19 O -0.53 -10.68 15.64 5.56 0.09 -10.59 16 20 C -0.14 -1.29 5.70 -27.88 -0.16 -1.45 16 21 C -0.10 -1.06 4.49 -26.73 -0.12 -1.18 16 22 C -0.08 -0.66 5.35 -27.88 -0.15 -0.81 16 23 C -0.08 -0.77 5.13 -104.62 -0.54 -1.30 16 24 C -0.12 -1.11 9.70 -39.58 -0.38 -1.49 16 25 C -0.12 -1.08 10.05 -39.58 -0.40 -1.47 16 26 C -0.13 -1.14 10.05 -39.58 -0.40 -1.54 16 27 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 28 C -0.12 -1.14 9.70 -39.58 -0.38 -1.52 16 29 C 0.11 2.35 5.97 -3.93 -0.02 2.33 16 30 H 0.30 10.13 6.56 -40.82 -0.27 9.86 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 1.92 5.41 -51.93 -0.28 1.64 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.40 3.47 8.60 -40.82 -0.35 3.12 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 41 H 0.07 0.96 8.10 -51.93 -0.42 0.53 16 42 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 43 H 0.07 0.48 8.08 -51.93 -0.42 0.06 16 44 H 0.12 0.94 8.06 -52.48 -0.42 0.52 16 45 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 46 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 47 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 48 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 49 H 0.09 2.18 7.03 -51.93 -0.37 1.82 16 50 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 406.99 15.07 6.13 6.13 Total: -1.00 -38.35 406.99 -10.84 -49.19 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.95 Total: 8.94 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -4.03 Total: -2.73 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.06 Total: -49.49 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: 0.16 Total: -30.93 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.09 Total: 18.88 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.35 -10.84 -49.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358844484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.350 kcal (2) G-P(sol) polarization free energy of solvation -38.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds