Wall clock time and date at job start Wed Apr 1 2020 03:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86798 * 120.00028 * 2 1 4 4 H 1.48503 * 109.47291 * 269.99895 * 3 2 1 5 5 H 1.48499 * 109.47159 * 149.99791 * 3 2 1 6 6 H 1.48507 * 109.47082 * 29.99760 * 3 2 1 7 7 C 1.40045 * 119.99899 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00102 * 198.44675 * 7 2 1 9 9 C 1.46377 * 119.99959 * 18.45061 * 7 2 1 10 10 O 1.21684 * 120.00121 * 20.45003 * 9 7 2 11 11 N 1.34769 * 119.99877 * 200.44531 * 9 7 2 12 12 C 1.46926 * 120.63374 * 355.13614 * 11 9 7 13 13 C 1.53196 * 108.77728 * 126.36393 * 12 11 9 14 14 C 1.53046 * 109.30818 * 54.64005 * 13 12 11 15 15 C 1.53044 * 109.53554 * 298.63322 * 14 13 12 16 16 H 1.09001 * 109.49772 * 301.41503 * 15 14 13 17 17 N 1.46503 * 109.49278 * 181.35142 * 15 14 13 18 18 C 1.34784 * 119.99807 * 154.99985 * 17 15 14 19 19 O 1.21278 * 119.99753 * 0.02562 * 18 17 15 20 20 C 1.50691 * 119.99934 * 180.02562 * 18 17 15 21 21 C 1.53006 * 109.47253 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47395 * 179.97438 * 21 20 18 23 23 C 1.50699 * 109.46988 * 179.97438 * 22 21 20 24 24 C 1.38233 * 119.99846 * 269.72510 * 23 22 21 25 25 C 1.38240 * 119.99887 * 179.81215 * 24 23 22 26 26 C 1.38230 * 119.99755 * 0.42089 * 25 24 23 27 27 C 1.38237 * 120.00135 * 359.80981 * 26 25 24 28 28 C 1.38231 * 120.00183 * 0.02562 * 27 26 25 29 29 C 1.46933 * 120.63214 * 174.85333 * 11 9 7 30 30 H 0.97001 * 120.00177 * 185.78686 * 1 2 3 31 31 H 1.09000 * 109.59084 * 246.15184 * 12 11 9 32 32 H 1.09003 * 109.58523 * 6.43803 * 12 11 9 33 33 H 1.09003 * 109.50063 * 174.58608 * 13 12 11 34 34 H 1.08995 * 109.49841 * 294.68670 * 13 12 11 35 35 H 1.09000 * 109.46330 * 58.65582 * 14 13 12 36 36 H 1.09007 * 109.45707 * 178.61351 * 14 13 12 37 37 H 0.96996 * 120.00231 * 335.00061 * 17 15 14 38 38 H 1.08998 * 109.47403 * 299.99975 * 20 18 17 39 39 H 1.09001 * 109.47724 * 59.99979 * 20 18 17 40 40 H 1.08998 * 109.46791 * 300.00221 * 21 20 18 41 41 H 1.09001 * 109.46878 * 59.99332 * 21 20 18 42 42 H 1.09005 * 109.46976 * 299.99914 * 22 21 20 43 43 H 1.08997 * 109.46775 * 59.99555 * 22 21 20 44 44 H 1.08003 * 120.00054 * 359.97438 * 24 23 22 45 45 H 1.08000 * 119.99873 * 180.20696 * 25 24 23 46 46 H 1.08005 * 119.99960 * 179.79115 * 26 25 24 47 47 H 1.08001 * 119.99887 * 179.97438 * 27 26 25 48 48 H 1.07999 * 120.00101 * 179.97438 * 28 27 26 49 49 H 1.08998 * 109.58194 * 353.42639 * 29 11 9 50 50 H 1.08998 * 109.58366 * 113.84438 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4001 5 1 3.5383 1.4402 0.7001 6 1 1.4381 2.6527 0.7000 7 6 2.0069 -1.2128 0.0005 8 1 3.0453 -1.2368 0.2965 9 6 1.3314 -2.4481 -0.4001 10 8 0.3185 -2.3971 -1.0724 11 7 1.8315 -3.6419 -0.0245 12 6 3.1095 -3.7251 0.6957 13 6 2.8984 -4.5273 1.9837 14 6 2.2816 -5.8849 1.6389 15 6 0.9201 -5.6740 0.9725 16 1 0.2681 -5.1168 1.6452 17 7 0.3162 -6.9746 0.6722 18 6 -1.0226 -7.0873 0.5651 19 8 -1.7273 -6.1120 0.7169 20 6 -1.6439 -8.4251 0.2567 21 6 -3.1653 -8.2777 0.1898 22 6 -3.7961 -9.6359 -0.1239 23 6 -5.2946 -9.4907 -0.1891 24 6 -6.0563 -9.6659 0.9510 25 6 -7.4306 -9.5289 0.8920 26 6 -8.0439 -9.2253 -0.3090 27 6 -7.2826 -9.0548 -1.4502 28 6 -5.9081 -9.1884 -1.3905 29 6 1.1060 -4.8845 -0.3218 30 1 -0.4850 -0.8358 0.0847 31 1 3.8492 -4.2254 0.0708 32 1 3.4569 -2.7214 0.9407 33 1 3.8573 -4.6787 2.4793 34 1 2.2278 -3.9808 2.6468 35 1 2.9411 -6.4206 0.9561 36 1 2.1531 -6.4675 2.5513 37 1 0.8798 -7.7545 0.5504 38 1 -1.2717 -8.7862 -0.7020 39 1 -1.3815 -9.1367 1.0396 40 1 -3.5378 -7.9164 1.1483 41 1 -3.4273 -7.5662 -0.5933 42 1 -3.4235 -9.9967 -1.0826 43 1 -3.5340 -10.3476 0.6589 44 1 -5.5774 -9.9073 1.8885 45 1 -8.0254 -9.6626 1.7835 46 1 -9.1179 -9.1216 -0.3559 47 1 -7.7619 -8.8179 -2.3886 48 1 -5.3134 -9.0555 -2.2821 49 1 0.1308 -4.6456 -0.7459 50 1 1.6791 -5.4812 -1.0315 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358844484.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:04 Heat of formation + Delta-G solvation = -106.015439 kcal Electronic energy + Delta-G solvation = -29228.277477 eV Core-core repulsion = 25217.570913 eV Total energy + Delta-G solvation = -4010.706565 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.29031 -40.30628 -40.02401 -38.16319 -35.92968 -35.53541 -34.72571 -33.04760 -32.35595 -31.77659 -30.98951 -28.34996 -27.65111 -25.89573 -24.51226 -23.47792 -23.24679 -22.40471 -21.70400 -21.36477 -20.84084 -19.12116 -18.20313 -17.63200 -17.51573 -17.05007 -16.96217 -16.53886 -16.07329 -16.02602 -15.63581 -15.58986 -15.21559 -14.97308 -14.73788 -14.69335 -14.37826 -14.34180 -14.24339 -13.84651 -13.77969 -13.58620 -13.45356 -12.93427 -12.85303 -12.65396 -12.59019 -12.48735 -12.14880 -11.99617 -11.98519 -11.85387 -11.84077 -11.78424 -11.62837 -11.57651 -10.93649 -10.90054 -10.37669 -9.95332 -9.83378 -9.60023 -9.33531 -8.97923 -6.95845 0.43870 0.48701 1.50356 1.54373 1.61785 1.80479 2.02759 2.32035 2.41896 2.76902 2.87620 3.34048 3.64093 3.73763 3.79718 3.87338 3.91769 3.99694 4.12826 4.13480 4.16581 4.20796 4.23070 4.30583 4.52335 4.55664 4.58887 4.60676 4.63173 4.70254 4.76707 4.78701 4.83990 4.87352 4.95742 4.99927 5.08400 5.11074 5.17473 5.20973 5.31355 5.37231 5.44589 5.53019 5.56648 5.61300 5.68712 5.72774 6.02809 6.13043 6.13452 6.56692 6.74230 7.29908 7.31610 8.13604 8.24848 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013189 B = 0.002080 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2122.405266 B =13458.538704 C =15026.609825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C -0.003 4.003 3 Si 1.136 2.864 4 H -0.270 1.270 5 H -0.242 1.242 6 H -0.276 1.276 7 C -0.633 4.633 8 H 0.097 0.903 9 C 0.538 3.462 10 O -0.673 6.673 11 N -0.639 5.639 12 C 0.109 3.891 13 C -0.125 4.125 14 C -0.107 4.107 15 C 0.142 3.858 16 H 0.038 0.962 17 N -0.707 5.707 18 C 0.496 3.504 19 O -0.598 6.598 20 C -0.124 4.124 21 C -0.096 4.096 22 C -0.070 4.070 23 C -0.095 4.095 24 C -0.131 4.131 25 C -0.130 4.130 26 C -0.138 4.138 27 C -0.133 4.133 28 C -0.136 4.136 29 C 0.116 3.884 30 H 0.273 0.727 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.040 0.960 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.423 0.577 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.048 0.952 41 H 0.038 0.962 42 H 0.089 0.911 43 H 0.096 0.904 44 H 0.135 0.865 45 H 0.138 0.862 46 H 0.137 0.863 47 H 0.134 0.866 48 H 0.127 0.873 49 H 0.026 0.974 50 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.099 -26.071 4.629 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.216 4.216 3 Si 0.951 3.049 4 H -0.195 1.195 5 H -0.165 1.165 6 H -0.202 1.202 7 C -0.669 4.669 8 H 0.115 0.885 9 C 0.347 3.653 10 O -0.565 6.565 11 N -0.373 5.373 12 C -0.013 4.013 13 C -0.164 4.164 14 C -0.145 4.145 15 C 0.035 3.965 16 H 0.057 0.943 17 N -0.361 5.361 18 C 0.285 3.715 19 O -0.478 6.478 20 C -0.163 4.163 21 C -0.135 4.135 22 C -0.107 4.107 23 C -0.096 4.096 24 C -0.149 4.149 25 C -0.148 4.148 26 C -0.156 4.156 27 C -0.151 4.151 28 C -0.154 4.154 29 C -0.009 4.009 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.134 0.866 34 H 0.059 0.941 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.262 0.738 38 H 0.142 0.858 39 H 0.152 0.848 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.107 0.893 43 H 0.114 0.886 44 H 0.153 0.847 45 H 0.156 0.844 46 H 0.155 0.845 47 H 0.152 0.848 48 H 0.145 0.855 49 H 0.045 0.955 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.302 -23.838 4.341 24.265 hybrid contribution -0.530 -1.465 -0.347 1.596 sum -1.832 -25.303 3.995 25.682 Atomic orbital electron populations 1.70281 1.09755 1.33006 1.34107 1.28705 0.95728 1.07914 0.89290 0.82853 0.74887 0.68601 0.78513 1.19527 1.16495 1.20161 1.22274 1.01003 0.92389 1.51246 0.88529 1.18893 0.83096 0.84605 0.78756 1.90479 1.31726 1.88001 1.46275 1.47960 1.23956 1.04748 1.60685 1.21808 0.84348 1.02023 0.93125 1.21888 1.02599 0.95234 0.96656 1.21735 0.92829 0.98064 1.01873 1.20959 0.96092 0.84394 0.95018 0.94322 1.45843 1.06884 1.11043 1.72295 1.21827 0.82381 0.92262 0.75076 1.90787 1.62888 1.42538 1.51602 1.21726 0.95421 0.92475 1.06682 1.21238 0.93742 0.97129 1.01361 1.20604 0.89436 0.96369 1.04297 1.20185 0.96762 0.99031 0.93574 1.21358 0.94326 1.00713 0.98508 1.21474 0.95124 0.99576 0.98647 1.21459 1.00935 1.00226 0.92992 1.21451 0.94227 0.99947 0.99443 1.21345 0.95341 1.00485 0.98206 1.21440 0.95969 0.86250 0.97286 0.91458 0.90649 0.90076 0.86555 0.94116 0.88248 0.88682 0.73848 0.85823 0.84834 0.93301 0.94312 0.89264 0.88555 0.84738 0.84372 0.84476 0.84815 0.85471 0.95534 0.91282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -55.95 13.24 21.83 0.29 -55.66 16 2 C 0.00 -0.17 5.36 85.30 0.46 0.29 16 3 Si 1.14 48.06 29.97 68.60 2.06 50.12 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.24 -8.66 7.11 99.48 0.71 -7.95 16 6 H -0.28 -11.46 7.11 99.48 0.71 -10.76 16 7 C -0.63 -37.13 8.62 24.83 0.21 -36.91 16 8 H 0.10 5.00 6.02 -2.91 -0.02 4.99 16 9 C 0.54 33.12 7.21 86.36 0.62 33.74 16 10 O -0.67 -48.21 14.21 -4.30 -0.06 -48.27 16 11 N -0.64 -30.52 2.98 -824.83 -2.46 -32.98 16 12 C 0.11 3.81 6.35 86.36 0.55 4.36 16 13 C -0.13 -3.29 6.08 30.68 0.19 -3.11 16 14 C -0.11 -2.34 5.36 30.62 0.16 -2.18 16 15 C 0.14 4.64 2.59 44.92 0.12 4.76 16 16 H 0.04 1.66 7.58 -2.39 -0.02 1.64 16 17 N -0.71 -16.93 5.08 -442.85 -2.25 -19.18 16 18 C 0.50 14.43 7.80 87.65 0.68 15.11 16 19 O -0.60 -26.36 15.64 -3.02 -0.05 -26.40 16 20 C -0.12 -2.04 5.70 29.85 0.17 -1.87 16 21 C -0.10 -2.07 4.49 30.60 0.14 -1.93 16 22 C -0.07 -1.03 5.35 29.85 0.16 -0.87 16 23 C -0.10 -1.84 5.13 -19.87 -0.10 -1.95 16 24 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 25 C -0.13 -2.31 10.05 22.27 0.22 -2.09 16 26 C -0.14 -2.47 10.05 22.27 0.22 -2.25 16 27 C -0.13 -2.52 10.05 22.27 0.22 -2.30 16 28 C -0.14 -2.73 9.70 22.27 0.22 -2.51 16 29 C 0.12 4.92 5.97 86.21 0.51 5.43 16 30 H 0.27 19.83 6.56 -92.71 -0.61 19.22 16 31 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 32 H 0.08 3.09 5.41 -2.39 -0.01 3.07 16 33 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 37 H 0.42 5.58 8.60 -92.71 -0.80 4.78 16 38 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.05 1.26 8.10 -2.39 -0.02 1.24 16 41 H 0.04 1.08 8.10 -2.39 -0.02 1.06 16 42 H 0.09 1.04 8.09 -2.38 -0.02 1.02 16 43 H 0.10 0.98 8.08 -2.39 -0.02 0.96 16 44 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 45 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 46 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 47 H 0.13 2.03 8.06 -2.91 -0.02 2.01 16 48 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 49 H 0.03 1.43 7.03 -2.39 -0.02 1.42 16 50 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -97.86 406.99 2.80 -95.06 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: 0.30 Total: 33.79 kcal Atomic # 6 Polarization: -1.45 SS G_CDS: 4.98 Total: 3.52 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -4.42 Total: -107.82 kcal Atomic # 8 Polarization: -74.56 SS G_CDS: -0.11 Total: -74.67 kcal Atomic # 14 Polarization: 48.06 SS G_CDS: 2.06 Total: 50.12 kcal Total: -97.86 2.80 -95.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358844484.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.958 kcal (2) G-P(sol) polarization free energy of solvation -97.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds