Wall clock time and date at job start Wed Apr 1 2020 03:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86802 * 119.99786 * 2 1 4 4 H 1.48498 * 109.47184 * 270.00200 * 3 2 1 5 5 H 1.48499 * 109.47049 * 29.99819 * 3 2 1 6 6 H 1.48498 * 109.47512 * 149.99840 * 3 2 1 7 7 C 1.40047 * 120.00819 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00440 * 179.97438 * 7 2 1 9 9 C 1.46379 * 119.99469 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00174 * 5.00662 * 9 7 2 11 11 N 1.34777 * 119.99907 * 185.00568 * 9 7 2 12 12 C 1.46921 * 120.63015 * 354.76222 * 11 9 7 13 13 C 1.53188 * 108.77559 * 233.62857 * 12 11 9 14 14 C 1.53036 * 109.34035 * 305.34790 * 13 12 11 15 15 C 1.53109 * 109.50416 * 61.34828 * 14 13 12 16 16 H 1.08996 * 109.51582 * 58.62993 * 15 14 13 17 17 N 1.46498 * 109.49275 * 178.70497 * 15 14 13 18 18 C 1.34777 * 119.99901 * 204.85370 * 17 15 14 19 19 O 1.21276 * 119.99918 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99484 * 179.97438 * 18 17 15 21 21 C 1.53006 * 109.46617 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47063 * 179.97438 * 21 20 18 23 23 C 1.50705 * 109.47313 * 179.97438 * 22 21 20 24 24 C 1.38228 * 119.99918 * 269.72919 * 23 22 21 25 25 C 1.38234 * 120.00008 * 179.76269 * 24 23 22 26 26 C 1.38233 * 119.99810 * 0.51219 * 25 24 23 27 27 C 1.38241 * 120.00092 * 359.74148 * 26 25 24 28 28 C 1.38229 * 119.99677 * 89.99914 * 23 22 21 29 29 C 1.46922 * 120.63200 * 174.77700 * 11 9 7 30 30 H 0.96994 * 120.00818 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.59255 * 113.83988 * 12 11 9 32 32 H 1.09003 * 109.59051 * 353.41750 * 12 11 9 33 33 H 1.08997 * 109.49832 * 65.31470 * 13 12 11 34 34 H 1.09004 * 109.49806 * 185.38237 * 13 12 11 35 35 H 1.09002 * 109.46672 * 181.40393 * 14 13 12 36 36 H 1.09003 * 109.46226 * 301.35832 * 14 13 12 37 37 H 0.97001 * 119.99808 * 24.85096 * 17 15 14 38 38 H 1.08994 * 109.47542 * 299.99940 * 20 18 17 39 39 H 1.08992 * 109.47452 * 60.00335 * 20 18 17 40 40 H 1.09001 * 109.47303 * 299.99851 * 21 20 18 41 41 H 1.09003 * 109.47323 * 60.00380 * 21 20 18 42 42 H 1.08995 * 109.47501 * 300.00496 * 22 21 20 43 43 H 1.09001 * 109.47216 * 59.99856 * 22 21 20 44 44 H 1.08004 * 120.00470 * 359.97438 * 24 23 22 45 45 H 1.07997 * 120.00581 * 180.22706 * 25 24 23 46 46 H 1.08002 * 120.00229 * 179.72014 * 26 25 24 47 47 H 1.07996 * 120.00098 * 179.97438 * 27 26 25 48 48 H 1.07998 * 120.00278 * 0.02562 * 28 23 22 49 49 H 1.08999 * 109.59106 * 246.16044 * 29 11 9 50 50 H 1.09008 * 109.58398 * 6.44864 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4880 2.0465 -1.4000 5 1 1.4380 2.6527 0.7000 6 1 3.5381 1.4404 0.7000 7 6 2.0071 -1.2127 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0017 10 8 0.0619 -2.4825 -0.0941 11 7 1.9453 -3.6455 0.0996 12 6 3.4143 -3.6668 0.0967 13 6 3.8913 -4.6339 -0.9913 14 6 3.2440 -6.0031 -0.7716 15 6 1.7220 -5.8715 -0.8747 16 1 1.4564 -5.4757 -1.8549 17 7 1.1043 -7.1876 -0.6950 18 6 -0.1126 -7.4379 -1.2176 19 8 -0.6963 -6.5734 -1.8362 20 6 -0.7477 -8.7920 -1.0332 21 6 -2.1153 -8.8114 -1.7192 22 6 -2.7600 -10.1864 -1.5326 23 6 -4.1072 -10.2054 -2.2076 24 6 -5.2389 -9.8414 -1.5023 25 6 -6.4740 -9.8541 -2.1228 26 6 -6.5788 -10.2409 -3.4458 27 6 -5.4478 -10.6100 -4.1497 28 6 -4.2119 -10.5922 -3.5306 29 6 1.2206 -4.9183 0.2148 30 1 -0.4851 0.8399 0.0004 31 1 3.7770 -4.0023 1.0683 32 1 3.7940 -2.6664 -0.1116 33 1 3.6057 -4.2494 -1.9705 34 1 4.9757 -4.7319 -0.9411 35 1 3.6012 -6.6997 -1.5300 36 1 3.5099 -6.3760 0.2176 37 1 1.5711 -7.8790 -0.2000 38 1 -0.1089 -9.5563 -1.4757 39 1 -0.8717 -8.9934 0.0307 40 1 -2.7544 -8.0471 -1.2771 41 1 -1.9910 -8.6103 -2.7833 42 1 -2.1207 -10.9505 -1.9748 43 1 -2.8842 -10.3881 -0.4686 44 1 -5.1577 -9.5437 -0.4672 45 1 -7.3577 -9.5662 -1.5729 46 1 -7.5444 -10.2552 -3.9294 47 1 -5.5297 -10.9127 -5.1832 48 1 -3.3284 -10.8811 -4.0803 49 1 1.4042 -5.3560 1.1960 50 1 0.1523 -4.7434 0.0867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358844489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:09 Heat of formation + Delta-G solvation = -66.687585 kcal Electronic energy + Delta-G solvation = -29123.760040 eV Core-core repulsion = 25114.758859 eV Total energy + Delta-G solvation = -4009.001181 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.91317 -39.42555 -38.27064 -36.03769 -35.02254 -33.92767 -32.54339 -31.58694 -31.14963 -31.07262 -29.55915 -27.12637 -26.27208 -24.21930 -23.32491 -22.76577 -22.05981 -20.94554 -20.64456 -20.04392 -18.90877 -17.20471 -16.72157 -16.59002 -16.03360 -15.75020 -15.61063 -15.27198 -15.17943 -14.49319 -14.39824 -13.96772 -13.91383 -13.67437 -13.63612 -13.42169 -13.16337 -13.02431 -12.92052 -12.49623 -12.23669 -12.11362 -12.00118 -11.64094 -11.56116 -11.33950 -11.24924 -11.13075 -11.05752 -10.95500 -10.78759 -10.74655 -10.59101 -10.22338 -10.10991 -9.92308 -9.57484 -9.10563 -8.95868 -8.86801 -8.80630 -7.53646 -7.18775 -6.16397 -4.61984 1.16666 1.21605 2.84082 3.15363 3.21310 3.24410 3.27257 3.60761 4.11108 4.49277 4.57313 4.61041 4.61132 4.77772 4.81100 4.90436 4.91711 5.01921 5.04464 5.15220 5.19971 5.31017 5.32404 5.42389 5.45397 5.48198 5.54922 5.62515 5.77928 5.78661 5.83075 5.86460 5.88279 6.00066 6.01781 6.12608 6.23804 6.28028 6.30853 6.32843 6.43720 6.45554 6.51062 6.54401 6.71022 6.80770 6.82414 7.47909 7.61338 7.70388 8.15431 8.36324 8.45457 9.04576 9.46516 10.61490 10.80088 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.002037 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.708627 B =13744.442792 C =15346.451947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.087 3.913 3 Si 0.907 3.093 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.544 4.544 8 H 0.073 0.927 9 C 0.558 3.442 10 O -0.572 6.572 11 N -0.640 5.640 12 C 0.119 3.881 13 C -0.132 4.132 14 C -0.119 4.119 15 C 0.130 3.870 16 H 0.088 0.912 17 N -0.728 5.728 18 C 0.505 3.495 19 O -0.526 6.526 20 C -0.138 4.138 21 C -0.100 4.100 22 C -0.081 4.081 23 C -0.078 4.078 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.128 4.128 27 C -0.120 4.120 28 C -0.118 4.118 29 C 0.115 3.885 30 H 0.268 0.732 31 H 0.042 0.958 32 H 0.095 0.905 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.395 0.605 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.039 0.961 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.829 -23.539 -2.545 23.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.091 0.909 9 C 0.364 3.636 10 O -0.454 6.454 11 N -0.379 5.379 12 C -0.005 4.005 13 C -0.172 4.172 14 C -0.158 4.158 15 C 0.025 3.975 16 H 0.106 0.894 17 N -0.380 5.380 18 C 0.291 3.709 19 O -0.401 6.401 20 C -0.179 4.179 21 C -0.138 4.138 22 C -0.118 4.118 23 C -0.079 4.079 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.146 4.146 27 C -0.138 4.138 28 C -0.136 4.136 29 C -0.010 4.010 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.113 0.887 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.229 0.771 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.091 0.909 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.058 0.942 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.136 -22.764 -3.047 23.066 hybrid contribution 0.794 0.396 0.261 0.925 sum -1.342 -22.368 -2.786 22.580 Atomic orbital electron populations 1.70015 1.07074 1.27301 1.35183 1.25740 0.94607 1.00304 0.92664 0.86392 0.80126 0.81516 0.78842 1.19723 1.20478 1.18892 1.20962 0.93507 0.89164 1.54455 0.90878 1.18294 0.86982 0.82164 0.76162 1.90618 1.14396 1.85923 1.54427 1.48188 1.04601 1.05483 1.79611 1.21453 0.82622 1.00398 0.96037 1.21940 0.99348 0.94809 1.01054 1.21750 0.94105 0.98308 1.01598 1.21473 0.92062 0.82467 1.01524 0.89363 1.46079 1.19440 1.15329 1.57106 1.20714 0.81243 0.89998 0.78984 1.90799 1.61790 1.47381 1.40147 1.21680 0.97967 0.95088 1.03128 1.21326 0.94301 0.96228 1.01904 1.20653 0.92799 0.97906 1.00484 1.19897 0.95226 0.98439 0.94289 1.21096 0.92284 0.99936 1.00129 1.21162 0.97634 0.99684 0.95162 1.21145 0.98556 1.00078 0.94793 1.21144 0.92785 1.00065 0.99778 1.21059 0.97632 1.00421 0.94464 1.21414 0.99444 0.85074 0.95106 0.92072 0.93967 0.88717 0.91443 0.91371 0.92079 0.91798 0.77139 0.89145 0.88960 0.90740 0.90982 0.90962 0.90866 0.86014 0.86128 0.86288 0.86211 0.86148 0.94239 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.53 11.84 55.55 0.66 -22.87 16 2 C 0.09 2.45 5.50 -17.37 -0.10 2.35 16 3 Si 0.91 20.28 29.56 -169.99 -5.02 15.25 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.54 -15.44 8.86 -35.63 -0.32 -15.76 16 8 H 0.07 1.86 5.69 -52.49 -0.30 1.57 16 9 C 0.56 16.38 7.62 -12.98 -0.10 16.28 16 10 O -0.57 -19.36 14.45 5.20 0.08 -19.28 16 11 N -0.64 -14.90 2.97 -174.43 -0.52 -15.42 16 12 C 0.12 2.17 6.31 -3.72 -0.02 2.15 16 13 C -0.13 -1.92 6.08 -26.62 -0.16 -2.08 16 14 C -0.12 -1.54 5.36 -26.66 -0.14 -1.69 16 15 C 0.13 2.14 2.60 -67.77 -0.18 1.97 16 16 H 0.09 1.78 7.58 -51.93 -0.39 1.39 16 17 N -0.73 -9.38 5.08 -53.65 -0.27 -9.65 16 18 C 0.50 7.34 7.79 -10.98 -0.09 7.26 16 19 O -0.53 -10.72 15.65 5.56 0.09 -10.64 16 20 C -0.14 -1.30 5.70 -27.88 -0.16 -1.46 16 21 C -0.10 -1.07 4.49 -26.73 -0.12 -1.18 16 22 C -0.08 -0.66 5.35 -27.88 -0.15 -0.81 16 23 C -0.08 -0.77 5.13 -104.63 -0.54 -1.30 16 24 C -0.12 -1.14 9.70 -39.59 -0.38 -1.53 16 25 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 26 C -0.13 -1.15 10.05 -39.58 -0.40 -1.54 16 27 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 28 C -0.12 -1.11 9.70 -39.59 -0.38 -1.49 16 29 C 0.12 2.38 6.02 -3.71 -0.02 2.36 16 30 H 0.27 7.47 8.29 -40.82 -0.34 7.13 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.09 1.82 5.37 -51.93 -0.28 1.54 16 33 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.40 3.51 8.60 -40.82 -0.35 3.15 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 41 H 0.07 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 43 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 44 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 48 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 50 H 0.09 2.22 6.99 -51.92 -0.36 1.86 16 LS Contribution 407.55 15.07 6.14 6.14 Total: -1.00 -38.73 407.55 -10.90 -49.62 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.00 Total: 6.30 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -4.05 Total: 0.54 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: -0.13 Total: -47.94 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: 0.16 Total: -29.92 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.25 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -38.73 -10.90 -49.62 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358844489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.063 kcal (2) G-P(sol) polarization free energy of solvation -38.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds