Wall clock time and date at job start Wed Apr 1 2020 03:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86802 * 119.99786 * 2 1 4 4 H 1.48498 * 109.47184 * 270.00200 * 3 2 1 5 5 H 1.48499 * 109.47049 * 29.99819 * 3 2 1 6 6 H 1.48498 * 109.47512 * 149.99840 * 3 2 1 7 7 C 1.40047 * 120.00819 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00440 * 179.97438 * 7 2 1 9 9 C 1.46379 * 119.99469 * 0.02562 * 7 2 1 10 10 O 1.21687 * 120.00174 * 5.00662 * 9 7 2 11 11 N 1.34777 * 119.99907 * 185.00568 * 9 7 2 12 12 C 1.46921 * 120.63015 * 354.76222 * 11 9 7 13 13 C 1.53188 * 108.77559 * 233.62857 * 12 11 9 14 14 C 1.53036 * 109.34035 * 305.34790 * 13 12 11 15 15 C 1.53109 * 109.50416 * 61.34828 * 14 13 12 16 16 H 1.08996 * 109.51582 * 58.62993 * 15 14 13 17 17 N 1.46498 * 109.49275 * 178.70497 * 15 14 13 18 18 C 1.34777 * 119.99901 * 204.85370 * 17 15 14 19 19 O 1.21276 * 119.99918 * 359.97438 * 18 17 15 20 20 C 1.50701 * 119.99484 * 179.97438 * 18 17 15 21 21 C 1.53006 * 109.46617 * 180.02562 * 20 18 17 22 22 C 1.52999 * 109.47063 * 179.97438 * 21 20 18 23 23 C 1.50705 * 109.47313 * 179.97438 * 22 21 20 24 24 C 1.38228 * 119.99918 * 269.72919 * 23 22 21 25 25 C 1.38234 * 120.00008 * 179.76269 * 24 23 22 26 26 C 1.38233 * 119.99810 * 0.51219 * 25 24 23 27 27 C 1.38241 * 120.00092 * 359.74148 * 26 25 24 28 28 C 1.38229 * 119.99677 * 89.99914 * 23 22 21 29 29 C 1.46922 * 120.63200 * 174.77700 * 11 9 7 30 30 H 0.96994 * 120.00818 * 359.97438 * 1 2 3 31 31 H 1.09002 * 109.59255 * 113.83988 * 12 11 9 32 32 H 1.09003 * 109.59051 * 353.41750 * 12 11 9 33 33 H 1.08997 * 109.49832 * 65.31470 * 13 12 11 34 34 H 1.09004 * 109.49806 * 185.38237 * 13 12 11 35 35 H 1.09002 * 109.46672 * 181.40393 * 14 13 12 36 36 H 1.09003 * 109.46226 * 301.35832 * 14 13 12 37 37 H 0.97001 * 119.99808 * 24.85096 * 17 15 14 38 38 H 1.08994 * 109.47542 * 299.99940 * 20 18 17 39 39 H 1.08992 * 109.47452 * 60.00335 * 20 18 17 40 40 H 1.09001 * 109.47303 * 299.99851 * 21 20 18 41 41 H 1.09003 * 109.47323 * 60.00380 * 21 20 18 42 42 H 1.08995 * 109.47501 * 300.00496 * 22 21 20 43 43 H 1.09001 * 109.47216 * 59.99856 * 22 21 20 44 44 H 1.08004 * 120.00470 * 359.97438 * 24 23 22 45 45 H 1.07997 * 120.00581 * 180.22706 * 25 24 23 46 46 H 1.08002 * 120.00229 * 179.72014 * 26 25 24 47 47 H 1.07996 * 120.00098 * 179.97438 * 27 26 25 48 48 H 1.07998 * 120.00278 * 0.02562 * 28 23 22 49 49 H 1.08999 * 109.59106 * 246.16044 * 29 11 9 50 50 H 1.09008 * 109.58398 * 6.44864 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 2.4880 2.0465 -1.4000 5 1 1.4380 2.6527 0.7000 6 1 3.5381 1.4404 0.7000 7 6 2.0071 -1.2127 -0.0005 8 1 3.0870 -1.2127 -0.0010 9 6 1.2752 -2.4805 -0.0017 10 8 0.0619 -2.4825 -0.0941 11 7 1.9453 -3.6455 0.0996 12 6 3.4143 -3.6668 0.0967 13 6 3.8913 -4.6339 -0.9913 14 6 3.2440 -6.0031 -0.7716 15 6 1.7220 -5.8715 -0.8747 16 1 1.4564 -5.4757 -1.8549 17 7 1.1043 -7.1876 -0.6950 18 6 -0.1126 -7.4379 -1.2176 19 8 -0.6963 -6.5734 -1.8362 20 6 -0.7477 -8.7920 -1.0332 21 6 -2.1153 -8.8114 -1.7192 22 6 -2.7600 -10.1864 -1.5326 23 6 -4.1072 -10.2054 -2.2076 24 6 -5.2389 -9.8414 -1.5023 25 6 -6.4740 -9.8541 -2.1228 26 6 -6.5788 -10.2409 -3.4458 27 6 -5.4478 -10.6100 -4.1497 28 6 -4.2119 -10.5922 -3.5306 29 6 1.2206 -4.9183 0.2148 30 1 -0.4851 0.8399 0.0004 31 1 3.7770 -4.0023 1.0683 32 1 3.7940 -2.6664 -0.1116 33 1 3.6057 -4.2494 -1.9705 34 1 4.9757 -4.7319 -0.9411 35 1 3.6012 -6.6997 -1.5300 36 1 3.5099 -6.3760 0.2176 37 1 1.5711 -7.8790 -0.2000 38 1 -0.1089 -9.5563 -1.4757 39 1 -0.8717 -8.9934 0.0307 40 1 -2.7544 -8.0471 -1.2771 41 1 -1.9910 -8.6103 -2.7833 42 1 -2.1207 -10.9505 -1.9748 43 1 -2.8842 -10.3881 -0.4686 44 1 -5.1577 -9.5437 -0.4672 45 1 -7.3577 -9.5662 -1.5729 46 1 -7.5444 -10.2552 -3.9294 47 1 -5.5297 -10.9127 -5.1832 48 1 -3.3284 -10.8811 -4.0803 49 1 1.4042 -5.3560 1.1960 50 1 0.1523 -4.7434 0.0867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358844489.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:19:08 Heat of formation + Delta-G solvation = -93.584468 kcal Electronic energy + Delta-G solvation = -29124.926376 eV Core-core repulsion = 25114.758859 eV Total energy + Delta-G solvation = -4010.167518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.18246 -40.21381 -39.87999 -37.85510 -35.88366 -35.41245 -34.70996 -32.89848 -32.30470 -31.75911 -30.93948 -28.58772 -27.68541 -25.88686 -24.45650 -23.46007 -23.17661 -22.24827 -21.67638 -21.27170 -20.60707 -18.50109 -18.15001 -17.81628 -17.48771 -17.03538 -16.90779 -16.28765 -16.20682 -16.00141 -15.83766 -15.47392 -15.12815 -14.71940 -14.65119 -14.61245 -14.36539 -14.22919 -14.13090 -13.78221 -13.58286 -13.50646 -13.08779 -12.99355 -12.81141 -12.77793 -12.72622 -12.46286 -12.39882 -12.01761 -11.96712 -11.87446 -11.76595 -11.62785 -11.55985 -11.52302 -10.96181 -10.86345 -10.27330 -9.81618 -9.80215 -9.58141 -9.06896 -8.30661 -6.86550 0.45706 0.50463 1.37763 1.40493 1.55789 1.67781 2.11363 2.25336 2.44737 2.86826 2.93271 3.55473 3.72848 3.77567 3.85226 3.93448 3.97261 4.07208 4.15376 4.16023 4.24546 4.25932 4.30959 4.32822 4.54816 4.62881 4.65143 4.66014 4.69329 4.74264 4.79109 4.86945 4.87754 4.95638 5.03677 5.06624 5.10920 5.16246 5.19654 5.23299 5.37467 5.38971 5.42083 5.51805 5.58401 5.62946 5.74818 5.76319 6.14047 6.14827 6.36497 6.62924 6.85203 7.37259 7.41602 8.45690 8.66394 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.013480 B = 0.002037 C = 0.001824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.708627 B =13744.442792 C =15346.451947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.022 3.978 3 Si 1.001 2.999 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.240 1.240 7 C -0.566 4.566 8 H 0.101 0.899 9 C 0.535 3.465 10 O -0.638 6.638 11 N -0.645 5.645 12 C 0.111 3.889 13 C -0.126 4.126 14 C -0.107 4.107 15 C 0.142 3.858 16 H 0.040 0.960 17 N -0.708 5.708 18 C 0.495 3.505 19 O -0.597 6.597 20 C -0.124 4.124 21 C -0.096 4.096 22 C -0.070 4.070 23 C -0.095 4.095 24 C -0.136 4.136 25 C -0.133 4.133 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.131 4.131 29 C 0.117 3.883 30 H 0.273 0.727 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.042 0.958 34 H 0.114 0.886 35 H 0.093 0.907 36 H 0.097 0.903 37 H 0.422 0.578 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.038 0.962 41 H 0.048 0.952 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.127 0.873 45 H 0.134 0.866 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.135 0.865 49 H 0.066 0.934 50 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.063 -25.810 -1.818 26.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.163 1.163 7 C -0.602 4.602 8 H 0.118 0.882 9 C 0.341 3.659 10 O -0.525 6.525 11 N -0.382 5.382 12 C -0.012 4.012 13 C -0.165 4.165 14 C -0.145 4.145 15 C 0.035 3.965 16 H 0.058 0.942 17 N -0.361 5.361 18 C 0.284 3.716 19 O -0.477 6.477 20 C -0.163 4.163 21 C -0.134 4.134 22 C -0.107 4.107 23 C -0.095 4.095 24 C -0.154 4.154 25 C -0.151 4.151 26 C -0.156 4.156 27 C -0.148 4.148 28 C -0.149 4.149 29 C -0.008 4.008 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.133 0.867 35 H 0.112 0.888 36 H 0.115 0.885 37 H 0.260 0.740 38 H 0.151 0.849 39 H 0.141 0.859 40 H 0.057 0.943 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.145 0.855 45 H 0.152 0.848 46 H 0.155 0.845 47 H 0.156 0.844 48 H 0.153 0.847 49 H 0.084 0.916 50 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 1.853 -25.141 -2.286 25.313 hybrid contribution -0.464 1.044 0.038 1.143 sum 1.389 -24.097 -2.248 24.242 Atomic orbital electron populations 1.70230 1.09887 1.28904 1.36759 1.27141 0.95508 1.05390 0.91169 0.84980 0.78972 0.74676 0.79418 1.18756 1.19984 1.16312 1.21533 0.94953 0.89411 1.54346 0.88168 1.18837 0.86575 0.84531 0.75921 1.90563 1.17197 1.87448 1.57317 1.48058 1.07054 1.04772 1.78276 1.21775 0.79043 1.01245 0.99116 1.21911 1.02072 0.94450 0.98059 1.21733 0.89972 0.98123 1.04653 1.21095 0.95205 0.83063 0.97126 0.94181 1.45861 1.19080 1.14473 1.56724 1.21796 0.81076 0.91281 0.77440 1.90787 1.63556 1.50055 1.43342 1.21722 0.97071 0.92358 1.05178 1.21235 0.94941 0.96954 1.00315 1.20606 0.92085 0.96477 1.01557 1.20185 0.95990 0.98581 0.94759 1.21346 0.92842 1.00443 1.00747 1.21448 0.98116 0.99786 0.95725 1.21457 0.99567 0.99780 0.94824 1.21473 0.92755 0.99799 1.00788 1.21354 0.98456 1.00472 0.94613 1.21469 0.95956 0.85293 0.98109 0.91716 0.91014 0.90103 0.93889 0.86733 0.88815 0.88470 0.73963 0.84896 0.85915 0.94318 0.93264 0.88556 0.89316 0.85481 0.84835 0.84489 0.84370 0.84730 0.91577 0.95580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -53.59 11.84 21.83 0.26 -53.33 16 2 C 0.02 1.29 5.50 85.31 0.47 1.76 16 3 Si 1.00 42.02 29.56 68.60 2.03 44.05 16 4 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.24 -9.06 7.11 99.48 0.71 -8.35 16 7 C -0.57 -33.08 8.86 24.83 0.22 -32.86 16 8 H 0.10 5.10 5.69 -2.91 -0.02 5.08 16 9 C 0.54 33.29 7.62 86.36 0.66 33.95 16 10 O -0.64 -46.91 14.45 -4.31 -0.06 -46.97 16 11 N -0.64 -31.00 2.97 -823.98 -2.45 -33.45 16 12 C 0.11 3.85 6.31 86.36 0.55 4.40 16 13 C -0.13 -3.27 6.08 30.67 0.19 -3.09 16 14 C -0.11 -2.34 5.36 30.64 0.16 -2.18 16 15 C 0.14 4.66 2.60 45.10 0.12 4.78 16 16 H 0.04 1.72 7.58 -2.39 -0.02 1.70 16 17 N -0.71 -17.21 5.08 -442.05 -2.25 -19.46 16 18 C 0.50 14.58 7.79 87.66 0.68 15.26 16 19 O -0.60 -26.49 15.65 -3.02 -0.05 -26.54 16 20 C -0.12 -2.08 5.70 29.85 0.17 -1.91 16 21 C -0.10 -2.08 4.49 30.60 0.14 -1.95 16 22 C -0.07 -1.05 5.35 29.85 0.16 -0.89 16 23 C -0.10 -1.85 5.13 -19.87 -0.10 -1.95 16 24 C -0.14 -2.75 9.70 22.27 0.22 -2.53 16 25 C -0.13 -2.54 10.05 22.27 0.22 -2.31 16 26 C -0.14 -2.48 10.05 22.27 0.22 -2.25 16 27 C -0.13 -2.31 10.05 22.27 0.22 -2.08 16 28 C -0.13 -2.43 9.70 22.27 0.22 -2.21 16 29 C 0.12 5.03 6.02 86.37 0.52 5.55 16 30 H 0.27 16.01 8.29 -92.71 -0.77 15.25 16 31 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.08 3.02 5.37 -2.39 -0.01 3.00 16 33 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 35 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.42 5.75 8.60 -92.71 -0.80 4.95 16 38 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.04 1.09 8.10 -2.39 -0.02 1.07 16 41 H 0.05 1.27 8.10 -2.39 -0.02 1.25 16 42 H 0.10 0.99 8.09 -2.39 -0.02 0.97 16 43 H 0.09 1.06 8.08 -2.39 -0.02 1.04 16 44 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.13 2.04 8.06 -2.91 -0.02 2.02 16 46 H 0.14 1.82 8.06 -2.91 -0.02 1.80 16 47 H 0.14 1.81 8.06 -2.91 -0.02 1.78 16 48 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16 49 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 50 H 0.03 1.43 6.99 -2.38 -0.02 1.41 16 Total: -1.00 -98.56 407.55 2.65 -95.91 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 0.14 Total: 30.30 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 5.03 Total: 9.48 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -4.44 Total: -106.24 kcal Atomic # 8 Polarization: -73.39 SS G_CDS: -0.11 Total: -73.50 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -98.56 2.65 -95.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358844489.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.325 kcal (2) G-P(sol) polarization free energy of solvation -98.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds