Wall clock time and date at job start Wed Apr 1 2020 03:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 119.99794 * 2 1 4 4 H 1.48502 * 109.47553 * 269.99803 * 3 2 1 5 5 H 1.48502 * 109.47611 * 30.00185 * 3 2 1 6 6 H 1.48503 * 109.47112 * 149.99937 * 3 2 1 7 7 C 1.37875 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00504 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47387 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47172 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00316 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99975 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99691 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.88857 * 325.69844 * 14 13 11 16 16 C 1.55154 * 111.00420 * 89.58001 * 14 13 11 17 17 C 1.54327 * 102.94290 * 153.61252 * 16 14 13 18 18 N 1.47029 * 107.26790 * 337.80696 * 17 16 14 19 19 C 1.34773 * 125.64802 * 178.99157 * 18 17 16 20 20 O 1.21281 * 120.00184 * 179.97438 * 19 18 17 21 21 C 1.50703 * 119.99892 * 359.96874 * 19 18 17 22 22 C 1.53000 * 109.47260 * 180.02562 * 21 19 18 23 23 C 1.50694 * 109.47468 * 179.97438 * 22 21 19 24 24 C 1.38236 * 120.00210 * 269.72645 * 23 22 21 25 25 C 1.38238 * 119.99755 * 179.73869 * 24 23 22 26 26 C 1.38237 * 120.00240 * 0.53684 * 25 24 23 27 27 C 1.38233 * 119.99501 * 359.73960 * 26 25 24 28 28 C 1.38223 * 120.00457 * 359.97438 * 27 26 25 29 29 C 1.47418 * 108.70495 * 358.93814 * 18 17 16 30 30 H 0.97001 * 120.00342 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46745 * 59.99969 * 9 7 2 32 32 H 1.09006 * 109.47007 * 300.00832 * 9 7 2 33 33 H 1.08998 * 109.46687 * 60.00216 * 10 9 7 34 34 H 1.08999 * 109.46872 * 300.00307 * 10 9 7 35 35 H 0.96990 * 119.99937 * 359.97438 * 13 11 10 36 36 H 1.09004 * 110.72212 * 271.97275 * 16 14 13 37 37 H 1.09001 * 110.72124 * 35.25393 * 16 14 13 38 38 H 1.08993 * 109.88730 * 97.22288 * 17 16 14 39 39 H 1.09003 * 109.88555 * 218.39558 * 17 16 14 40 40 H 1.08998 * 109.47386 * 300.00642 * 21 19 18 41 41 H 1.09005 * 109.47318 * 60.00520 * 21 19 18 42 42 H 1.08998 * 109.47059 * 300.00369 * 22 21 19 43 43 H 1.09007 * 109.47426 * 59.99899 * 22 21 19 44 44 H 1.07998 * 119.99983 * 0.02562 * 24 23 22 45 45 H 1.08001 * 119.99544 * 180.29214 * 25 24 23 46 46 H 1.07998 * 119.99705 * 179.76778 * 26 25 24 47 47 H 1.08008 * 119.99582 * 179.97438 * 27 26 25 48 48 H 1.08003 * 120.00197 * 180.02562 * 28 27 26 49 49 H 1.08995 * 110.37279 * 265.29528 * 29 18 17 50 50 H 1.08997 * 110.36990 * 142.96726 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5285 -2.6366 0.0001 12 8 6.1350 -1.5863 -0.0004 13 7 6.2024 -3.8038 -0.0003 14 6 7.6674 -3.8037 0.0003 15 1 8.0563 -2.9621 -0.5729 16 6 8.2229 -3.7940 1.4490 17 6 9.6047 -4.4634 1.2938 18 7 9.5654 -5.2653 0.0621 19 6 10.5864 -5.9902 -0.4362 20 8 10.4405 -6.6165 -1.4645 21 6 11.9097 -6.0226 0.2844 22 6 12.8884 -6.9111 -0.4861 23 6 14.2117 -6.9430 0.2341 24 6 15.1867 -6.0114 -0.0700 25 6 16.3987 -6.0374 0.5945 26 6 16.6397 -7.0017 1.5552 27 6 15.6668 -7.9368 1.8551 28 6 14.4528 -7.9072 1.1949 29 6 8.2237 -5.1460 -0.5370 30 1 -0.4851 0.8400 -0.0004 31 1 3.8752 -0.6797 0.8895 32 1 3.8746 -0.6807 -0.8905 33 1 3.6579 -3.1505 -0.8897 34 1 3.6585 -3.1502 0.8903 35 1 5.7174 -4.6438 -0.0002 36 1 8.3282 -2.7726 1.8148 37 1 7.5837 -4.3780 2.1111 38 1 10.3794 -3.7008 1.2150 39 1 9.8024 -5.1086 2.1499 40 1 12.3121 -5.0118 0.3507 41 1 11.7672 -6.4235 1.2879 42 1 12.4861 -7.9220 -0.5528 43 1 13.0308 -6.5099 -1.4896 44 1 14.9999 -5.2605 -0.8234 45 1 17.1586 -5.3067 0.3602 46 1 17.5880 -7.0242 2.0716 47 1 15.8553 -8.6905 2.6054 48 1 13.6925 -8.6375 1.4296 49 1 7.5907 -5.9739 -0.2179 50 1 8.2948 -5.1190 -1.6244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360308114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:28 Heat of formation + Delta-G solvation = -62.741728 kcal Electronic energy + Delta-G solvation = -28198.535304 eV Core-core repulsion = 24189.705228 eV Total energy + Delta-G solvation = -4008.830076 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.64862 -39.74883 -39.25832 -37.65306 -34.48953 -34.23097 -33.51329 -31.56183 -31.31862 -30.88264 -30.20943 -28.81971 -26.24623 -25.14216 -23.39489 -23.00436 -22.02514 -21.33879 -20.87694 -19.89419 -19.42244 -17.76859 -17.34727 -17.00434 -16.95874 -16.17744 -15.89285 -15.75211 -15.41938 -15.23447 -15.00577 -14.53362 -14.11717 -13.93848 -13.87380 -13.64605 -13.61019 -13.33813 -13.30862 -12.90327 -12.77735 -12.69273 -12.58442 -12.33454 -12.09178 -11.78271 -11.72982 -11.44856 -11.43444 -11.27567 -11.14000 -10.98049 -10.24073 -10.19776 -10.08184 -9.81408 -9.35634 -9.33383 -9.20387 -9.13422 -9.09812 -8.99250 -8.52692 -6.04905 -4.03913 0.89998 0.96653 2.27233 2.46375 2.99975 3.33097 3.36128 3.39404 3.43044 3.52922 3.95186 4.22514 4.35584 4.38846 4.48887 4.53667 4.56857 4.62202 4.69381 4.74088 4.77286 4.86197 4.88910 5.06177 5.08196 5.09363 5.23770 5.30549 5.32754 5.40264 5.41514 5.51665 5.52942 5.63862 5.69902 5.74007 5.81532 5.89011 6.03443 6.03549 6.05310 6.08999 6.20567 6.50313 6.57274 6.64914 7.09247 7.32903 7.39951 7.64689 7.76536 7.78585 8.46317 8.56571 8.98001 9.57991 11.07894 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030152 B = 0.001468 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.419796 B =19074.962681 C =19468.055839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.122 4.122 11 C 0.514 3.486 12 O -0.537 6.537 13 N -0.733 5.733 14 C 0.134 3.866 15 H 0.103 0.897 16 C -0.146 4.146 17 C 0.102 3.898 18 N -0.618 5.618 19 C 0.529 3.471 20 O -0.539 6.539 21 C -0.129 4.129 22 C -0.066 4.066 23 C -0.082 4.082 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.125 4.125 27 C -0.119 4.119 28 C -0.117 4.117 29 C 0.101 3.899 30 H 0.263 0.737 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.401 0.599 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.122 0.878 49 H 0.074 0.926 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.404 -17.181 4.792 36.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.162 4.162 11 C 0.303 3.697 12 O -0.413 6.413 13 N -0.387 5.387 14 C 0.027 3.973 15 H 0.121 0.879 16 C -0.185 4.185 17 C -0.022 4.022 18 N -0.354 5.354 19 C 0.319 3.681 20 O -0.416 6.416 21 C -0.169 4.169 22 C -0.104 4.104 23 C -0.082 4.082 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.143 4.143 27 C -0.137 4.137 28 C -0.135 4.135 29 C -0.022 4.022 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.037 0.963 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.236 0.764 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.091 0.909 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.140 0.860 49 H 0.092 0.908 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 32.664 -16.660 4.204 36.908 hybrid contribution 0.133 0.506 0.164 0.548 sum 32.797 -16.154 4.367 36.820 Atomic orbital electron populations 1.69912 1.06298 1.26987 1.50982 1.24969 0.94699 0.99218 0.94307 0.86797 0.80586 0.83417 0.78745 1.20254 1.21435 1.18561 1.21108 0.89263 0.94580 1.51439 0.90922 1.19372 0.96451 0.90150 0.97667 1.21680 0.87647 1.03383 1.03486 1.21594 0.91612 0.82617 0.73899 1.90658 1.70752 1.31403 1.48445 1.46032 1.05247 1.09659 1.77719 1.21933 0.81719 0.97672 0.95961 0.87867 1.23105 0.94917 1.02428 0.98042 1.22102 0.98839 0.94493 0.86734 1.48412 1.12256 1.48666 1.26036 1.20397 0.84759 0.78048 0.84928 1.90731 1.83026 1.43510 1.24284 1.21629 0.92024 1.02733 1.00466 1.20354 0.90458 1.01092 0.98494 1.19905 0.95776 0.95645 0.96877 1.21114 0.93507 0.98745 1.00060 1.21178 0.97198 0.98723 0.96543 1.21177 0.99347 0.95578 0.98238 1.21167 0.93763 0.98949 0.99799 1.21099 0.97369 0.98614 0.96386 1.22369 0.83383 0.96843 0.99649 0.92702 0.95820 0.96276 0.89464 0.89472 0.76418 0.89091 0.89894 0.90864 0.90912 0.88631 0.88685 0.90053 0.90030 0.85977 0.86054 0.86173 0.86074 0.86016 0.90777 0.89545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.33 27.47 -169.99 -4.67 17.67 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.59 6.54 56.52 0.37 -6.22 16 7 C -0.53 -14.83 9.66 -34.44 -0.33 -15.16 16 8 H 0.07 2.14 7.99 -52.49 -0.42 1.72 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.24 5.64 -27.89 -0.16 -2.40 16 11 C 0.51 8.64 7.83 -10.99 -0.09 8.56 16 12 O -0.54 -11.15 15.67 5.56 0.09 -11.06 16 13 N -0.73 -8.64 5.22 -51.73 -0.27 -8.91 16 14 C 0.13 1.41 3.37 -65.78 -0.22 1.18 16 15 H 0.10 1.30 7.63 -51.93 -0.40 0.91 16 16 C -0.15 -1.25 6.65 -24.90 -0.17 -1.42 16 17 C 0.10 0.68 6.49 -3.06 -0.02 0.66 16 18 N -0.62 -5.49 3.33 -170.52 -0.57 -6.05 16 19 C 0.53 5.20 7.85 -10.99 -0.09 5.11 16 20 O -0.54 -7.30 16.24 5.56 0.09 -7.21 16 21 C -0.13 -0.84 4.87 -27.88 -0.14 -0.97 16 22 C -0.07 -0.47 4.63 -27.89 -0.13 -0.60 16 23 C -0.08 -0.56 5.13 -104.62 -0.54 -1.10 16 24 C -0.12 -0.77 9.70 -39.58 -0.38 -1.15 16 25 C -0.12 -0.72 10.05 -39.58 -0.40 -1.12 16 26 C -0.13 -0.74 10.05 -39.58 -0.40 -1.14 16 27 C -0.12 -0.71 10.05 -39.59 -0.40 -1.11 16 28 C -0.12 -0.75 9.70 -39.59 -0.38 -1.13 16 29 C 0.10 0.95 6.54 -2.53 -0.02 0.93 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.26 16 31 H 0.02 0.60 7.15 -51.93 -0.37 0.23 16 32 H 0.02 0.48 7.53 -51.93 -0.39 0.09 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 35 H 0.40 3.60 8.54 -40.82 -0.35 3.25 16 36 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.08 0.62 8.04 -51.93 -0.42 0.21 16 43 H 0.08 0.64 8.04 -51.93 -0.42 0.22 16 44 H 0.12 0.67 8.06 -52.49 -0.42 0.24 16 45 H 0.12 0.53 8.06 -52.49 -0.42 0.11 16 46 H 0.12 0.49 8.06 -52.49 -0.42 0.06 16 47 H 0.12 0.50 8.06 -52.48 -0.42 0.08 16 48 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 49 H 0.07 0.62 8.00 -51.93 -0.42 0.21 16 50 H 0.09 0.91 8.04 -51.93 -0.42 0.50 16 LS Contribution 414.34 15.07 6.24 6.24 Total: -1.00 -36.06 414.34 -10.61 -46.67 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -8.26 Total: -1.38 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -4.04 Total: -8.97 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: -0.06 Total: -41.95 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.18 Total: -18.27 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.06 -10.61 -46.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360308114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.077 kcal (2) G-P(sol) polarization free energy of solvation -36.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds