Wall clock time and date at job start Wed Apr 1 2020 03:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86792 * 119.99794 * 2 1 4 4 H 1.48502 * 109.47553 * 269.99803 * 3 2 1 5 5 H 1.48502 * 109.47611 * 30.00185 * 3 2 1 6 6 H 1.48503 * 109.47112 * 149.99937 * 3 2 1 7 7 C 1.37875 * 119.99739 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00504 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99944 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47387 * 180.02562 * 9 7 2 11 11 C 1.50695 * 109.47172 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00316 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99975 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99691 * 180.02562 * 13 11 10 15 15 H 1.09002 * 110.88857 * 325.69844 * 14 13 11 16 16 C 1.55154 * 111.00420 * 89.58001 * 14 13 11 17 17 C 1.54327 * 102.94290 * 153.61252 * 16 14 13 18 18 N 1.47029 * 107.26790 * 337.80696 * 17 16 14 19 19 C 1.34773 * 125.64802 * 178.99157 * 18 17 16 20 20 O 1.21281 * 120.00184 * 179.97438 * 19 18 17 21 21 C 1.50703 * 119.99892 * 359.96874 * 19 18 17 22 22 C 1.53000 * 109.47260 * 180.02562 * 21 19 18 23 23 C 1.50694 * 109.47468 * 179.97438 * 22 21 19 24 24 C 1.38236 * 120.00210 * 269.72645 * 23 22 21 25 25 C 1.38238 * 119.99755 * 179.73869 * 24 23 22 26 26 C 1.38237 * 120.00240 * 0.53684 * 25 24 23 27 27 C 1.38233 * 119.99501 * 359.73960 * 26 25 24 28 28 C 1.38223 * 120.00457 * 359.97438 * 27 26 25 29 29 C 1.47418 * 108.70495 * 358.93814 * 18 17 16 30 30 H 0.97001 * 120.00342 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46745 * 59.99969 * 9 7 2 32 32 H 1.09006 * 109.47007 * 300.00832 * 9 7 2 33 33 H 1.08998 * 109.46687 * 60.00216 * 10 9 7 34 34 H 1.08999 * 109.46872 * 300.00307 * 10 9 7 35 35 H 0.96990 * 119.99937 * 359.97438 * 13 11 10 36 36 H 1.09004 * 110.72212 * 271.97275 * 16 14 13 37 37 H 1.09001 * 110.72124 * 35.25393 * 16 14 13 38 38 H 1.08993 * 109.88730 * 97.22288 * 17 16 14 39 39 H 1.09003 * 109.88555 * 218.39558 * 17 16 14 40 40 H 1.08998 * 109.47386 * 300.00642 * 21 19 18 41 41 H 1.09005 * 109.47318 * 60.00520 * 21 19 18 42 42 H 1.08998 * 109.47059 * 300.00369 * 22 21 19 43 43 H 1.09007 * 109.47426 * 59.99899 * 22 21 19 44 44 H 1.07998 * 119.99983 * 0.02562 * 24 23 22 45 45 H 1.08001 * 119.99544 * 180.29214 * 25 24 23 46 46 H 1.07998 * 119.99705 * 179.76778 * 26 25 24 47 47 H 1.08008 * 119.99582 * 179.97438 * 27 26 25 48 48 H 1.08003 * 120.00197 * 180.02562 * 28 27 26 49 49 H 1.08995 * 110.37279 * 265.29528 * 29 18 17 50 50 H 1.08997 * 110.36990 * 142.96726 * 29 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5285 -2.6366 0.0001 12 8 6.1350 -1.5863 -0.0004 13 7 6.2024 -3.8038 -0.0003 14 6 7.6674 -3.8037 0.0003 15 1 8.0563 -2.9621 -0.5729 16 6 8.2229 -3.7940 1.4490 17 6 9.6047 -4.4634 1.2938 18 7 9.5654 -5.2653 0.0621 19 6 10.5864 -5.9902 -0.4362 20 8 10.4405 -6.6165 -1.4645 21 6 11.9097 -6.0226 0.2844 22 6 12.8884 -6.9111 -0.4861 23 6 14.2117 -6.9430 0.2341 24 6 15.1867 -6.0114 -0.0700 25 6 16.3987 -6.0374 0.5945 26 6 16.6397 -7.0017 1.5552 27 6 15.6668 -7.9368 1.8551 28 6 14.4528 -7.9072 1.1949 29 6 8.2237 -5.1460 -0.5370 30 1 -0.4851 0.8400 -0.0004 31 1 3.8752 -0.6797 0.8895 32 1 3.8746 -0.6807 -0.8905 33 1 3.6579 -3.1505 -0.8897 34 1 3.6585 -3.1502 0.8903 35 1 5.7174 -4.6438 -0.0002 36 1 8.3282 -2.7726 1.8148 37 1 7.5837 -4.3780 2.1111 38 1 10.3794 -3.7008 1.2150 39 1 9.8024 -5.1086 2.1499 40 1 12.3121 -5.0118 0.3507 41 1 11.7672 -6.4235 1.2879 42 1 12.4861 -7.9220 -0.5528 43 1 13.0308 -6.5099 -1.4896 44 1 14.9999 -5.2605 -0.8234 45 1 17.1586 -5.3067 0.3602 46 1 17.5880 -7.0242 2.0716 47 1 15.8553 -8.6905 2.6054 48 1 13.6925 -8.6375 1.4296 49 1 7.5907 -5.9739 -0.2179 50 1 8.2948 -5.1190 -1.6244 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360308114.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:27 Heat of formation + Delta-G solvation = -85.154341 kcal Electronic energy + Delta-G solvation = -28199.507188 eV Core-core repulsion = 24189.705228 eV Total energy + Delta-G solvation = -4009.801960 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.45859 -40.62970 -40.02221 -38.56180 -35.57864 -35.30489 -34.97320 -33.34619 -31.88214 -31.73833 -30.77328 -29.65682 -27.89668 -25.89675 -24.07593 -23.48201 -23.42878 -22.02237 -21.79764 -21.28384 -20.16014 -19.22571 -18.41398 -17.94840 -17.54945 -17.40012 -16.70446 -16.55600 -16.43437 -16.23781 -15.98030 -15.79454 -15.28387 -14.81962 -14.76677 -14.58280 -14.38310 -14.27698 -14.17707 -14.06157 -13.86855 -13.50390 -13.47287 -13.38638 -13.02851 -12.87877 -12.74788 -12.63540 -12.22893 -12.09163 -11.95993 -11.89447 -11.86565 -11.75077 -11.71344 -11.38603 -11.03264 -10.78430 -10.77189 -10.12663 -9.79344 -9.76089 -9.59207 -8.30523 -6.33393 0.45171 0.52994 1.34058 1.36128 1.50535 1.53639 1.66774 1.71202 2.35585 2.36263 2.90505 3.05507 3.26440 3.51144 3.68738 3.91698 3.95658 3.98984 4.01360 4.15724 4.19449 4.20815 4.25298 4.26465 4.35098 4.42300 4.51709 4.54210 4.62926 4.63770 4.68655 4.74258 4.78997 4.94622 4.97781 5.00713 5.06902 5.10107 5.14730 5.21399 5.24158 5.35294 5.46791 5.50359 5.61103 5.62579 5.66782 5.74655 6.15393 6.24435 6.39325 6.56453 6.73538 7.05382 7.29529 7.32175 8.85139 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.030152 B = 0.001468 C = 0.001438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.419796 B =19074.962681 C =19468.055839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.014 3.986 3 Si 0.938 3.062 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.259 1.259 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.004 3.996 10 C -0.117 4.117 11 C 0.521 3.479 12 O -0.581 6.581 13 N -0.710 5.710 14 C 0.131 3.869 15 H 0.081 0.919 16 C -0.140 4.140 17 C 0.104 3.896 18 N -0.619 5.619 19 C 0.526 3.474 20 O -0.584 6.584 21 C -0.119 4.119 22 C -0.061 4.061 23 C -0.090 4.090 24 C -0.129 4.129 25 C -0.128 4.128 26 C -0.133 4.133 27 C -0.126 4.126 28 C -0.127 4.127 29 C 0.106 3.894 30 H 0.267 0.733 31 H 0.012 0.988 32 H 0.007 0.993 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.418 0.582 36 H 0.081 0.919 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.071 0.929 43 H 0.067 0.933 44 H 0.128 0.872 45 H 0.136 0.864 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.132 0.868 49 H 0.090 0.910 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.613 -17.875 6.262 39.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.184 4.184 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.204 1.204 6 H -0.183 1.183 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.034 4.034 10 C -0.157 4.157 11 C 0.309 3.691 12 O -0.460 6.460 13 N -0.363 5.363 14 C 0.025 3.975 15 H 0.099 0.901 16 C -0.179 4.179 17 C -0.018 4.018 18 N -0.353 5.353 19 C 0.317 3.683 20 O -0.464 6.464 21 C -0.158 4.158 22 C -0.098 4.098 23 C -0.090 4.090 24 C -0.147 4.147 25 C -0.145 4.145 26 C -0.151 4.151 27 C -0.144 4.144 28 C -0.144 4.144 29 C -0.018 4.018 30 H 0.076 0.924 31 H 0.030 0.970 32 H 0.026 0.974 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.256 0.744 36 H 0.100 0.900 37 H 0.112 0.888 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.086 0.914 44 H 0.146 0.854 45 H 0.154 0.846 46 H 0.155 0.845 47 H 0.156 0.844 48 H 0.150 0.850 49 H 0.108 0.892 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 34.885 -17.398 5.697 39.397 hybrid contribution -0.561 0.627 -0.304 0.894 sum 34.325 -16.771 5.393 38.582 Atomic orbital electron populations 1.70028 1.07821 1.28056 1.52582 1.25801 0.95460 1.02843 0.94298 0.85834 0.79329 0.79530 0.79040 1.19609 1.20447 1.18316 1.21452 0.91363 0.93683 1.50226 0.93169 1.19230 0.93827 0.93899 0.96418 1.21500 0.89160 0.99844 1.05194 1.21145 0.90889 0.83213 0.73832 1.90648 1.71245 1.33190 1.50950 1.45710 1.06062 1.08924 1.75605 1.21953 0.80420 0.97559 0.97542 0.90109 1.23054 0.96096 1.02426 0.96324 1.22238 0.97982 0.94975 0.86579 1.48492 1.11783 1.48459 1.26529 1.20970 0.85663 0.77248 0.84441 1.90712 1.83817 1.45513 1.26345 1.21626 0.89850 1.03586 1.00738 1.20247 0.90952 1.00602 0.98045 1.19900 0.95618 0.96178 0.97266 1.21288 0.93852 0.99079 1.00477 1.21432 0.97384 0.99205 0.96523 1.21475 1.00120 0.95341 0.98180 1.21442 0.93575 0.99349 1.00056 1.21294 0.98005 0.98743 0.96404 1.22257 0.84195 0.96500 0.98814 0.92434 0.96954 0.97428 0.88007 0.87646 0.74412 0.90005 0.88790 0.89531 0.88164 0.87114 0.86557 0.90997 0.91403 0.85436 0.84635 0.84481 0.84414 0.85046 0.89218 0.91130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 2 C 0.01 0.80 5.47 84.65 0.46 1.26 16 3 Si 0.94 46.24 27.47 68.60 1.88 48.12 16 4 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 5 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 6 H -0.26 -12.57 6.54 99.48 0.65 -11.92 16 7 C -0.53 -30.07 9.66 25.60 0.25 -29.82 16 8 H 0.05 3.00 7.99 -2.91 -0.02 2.98 16 9 C 0.00 0.21 3.33 29.85 0.10 0.31 16 10 C -0.12 -4.17 5.64 29.85 0.17 -4.00 16 11 C 0.52 16.90 7.83 87.65 0.69 17.58 16 12 O -0.58 -23.89 15.67 -3.04 -0.05 -23.94 16 13 N -0.71 -15.43 5.22 -435.95 -2.27 -17.70 16 14 C 0.13 2.57 3.37 46.38 0.16 2.73 16 15 H 0.08 2.01 7.63 -2.39 -0.02 1.99 16 16 C -0.14 -2.06 6.65 31.78 0.21 -1.85 16 17 C 0.10 1.08 6.49 86.73 0.56 1.64 16 18 N -0.62 -9.73 3.33 -811.79 -2.70 -12.43 16 19 C 0.53 9.63 7.85 87.66 0.69 10.32 16 20 O -0.58 -15.79 16.24 -3.03 -0.05 -15.83 16 21 C -0.12 -1.31 4.87 29.85 0.15 -1.17 16 22 C -0.06 -0.82 4.63 29.85 0.14 -0.68 16 23 C -0.09 -1.13 5.13 -19.87 -0.10 -1.23 16 24 C -0.13 -1.57 9.70 22.27 0.22 -1.35 16 25 C -0.13 -1.37 10.05 22.27 0.22 -1.15 16 26 C -0.13 -1.34 10.05 22.27 0.22 -1.11 16 27 C -0.13 -1.28 10.05 22.26 0.22 -1.06 16 28 C -0.13 -1.44 9.70 22.27 0.22 -1.22 16 29 C 0.11 1.83 6.54 86.86 0.57 2.40 16 30 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 31 H 0.01 0.61 7.15 -2.39 -0.02 0.59 16 32 H 0.01 0.37 7.53 -2.38 -0.02 0.35 16 33 H 0.10 3.31 8.14 -2.39 -0.02 3.29 16 34 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.42 6.41 8.54 -92.72 -0.79 5.62 16 36 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.12 0.82 8.14 -2.38 -0.02 0.80 16 42 H 0.07 1.09 8.04 -2.39 -0.02 1.07 16 43 H 0.07 1.08 8.04 -2.38 -0.02 1.06 16 44 H 0.13 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.14 0.97 8.06 -2.91 -0.02 0.94 16 46 H 0.14 0.82 8.06 -2.91 -0.02 0.79 16 47 H 0.14 0.85 8.06 -2.91 -0.02 0.82 16 48 H 0.13 1.14 8.06 -2.91 -0.02 1.11 16 49 H 0.09 1.29 8.00 -2.39 -0.02 1.27 16 50 H 0.07 1.47 8.04 -2.39 -0.02 1.45 16 Total: -1.00 -79.42 414.34 2.32 -77.09 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: 0.08 Total: 11.55 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 5.14 Total: -8.40 kcal Atomic # 7 Polarization: -83.91 SS G_CDS: -4.67 Total: -88.59 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -0.10 Total: -39.78 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 1.88 Total: 48.12 kcal Total: -79.42 2.32 -77.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360308114.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.062 kcal (2) G-P(sol) polarization free energy of solvation -79.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds