Wall clock time and date at job start Wed Apr 1 2020 03:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48502 * 109.47354 * 270.00079 * 3 2 1 5 5 H 1.48499 * 109.47247 * 30.00106 * 3 2 1 6 6 H 1.48501 * 109.47151 * 150.00011 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99936 * 172.13263 * 7 2 1 9 9 C 1.50708 * 119.99746 * 352.12932 * 7 2 1 10 10 C 1.52995 * 115.54982 * 294.80037 * 9 7 2 11 11 N 1.46497 * 109.47127 * 275.58667 * 10 9 7 12 12 C 1.34778 * 119.99526 * 185.00838 * 11 10 9 13 13 O 1.21588 * 120.00662 * 4.99656 * 12 11 10 14 14 N 1.34782 * 119.99664 * 184.99243 * 12 11 10 15 15 C 1.47422 * 125.64816 * 355.09338 * 14 12 11 16 16 C 1.54913 * 104.83068 * 204.09011 * 15 14 12 17 17 C 1.55407 * 101.66372 * 323.06898 * 16 15 14 18 18 C 1.52998 * 110.69657 * 277.05159 * 17 16 15 19 19 O 1.42901 * 109.46909 * 174.82386 * 18 17 16 20 20 C 1.50699 * 110.84960 * 153.69935 * 17 16 15 21 21 C 1.38239 * 120.00222 * 4.81661 * 20 17 16 22 22 C 1.38230 * 119.99810 * 179.76314 * 21 20 17 23 23 C 1.38232 * 120.00249 * 0.50867 * 22 21 20 24 24 C 1.38242 * 119.99982 * 359.74319 * 23 22 21 25 25 C 1.38230 * 119.99904 * 185.08378 * 20 17 16 26 26 C 1.47018 * 125.64760 * 175.04256 * 14 12 11 27 27 C 1.53000 * 117.51423 * 80.50224 * 9 7 2 28 28 C 1.53002 * 117.49405 * 149.12909 * 9 7 2 29 29 H 0.97001 * 120.00165 * 5.00861 * 1 2 3 30 30 H 1.09003 * 109.46658 * 155.58485 * 10 9 7 31 31 H 1.08998 * 109.47456 * 35.59002 * 10 9 7 32 32 H 0.96994 * 120.00240 * 5.00768 * 11 10 9 33 33 H 1.09008 * 110.36446 * 322.92240 * 15 14 12 34 34 H 1.08996 * 110.37435 * 85.13869 * 15 14 12 35 35 H 1.09001 * 111.00647 * 81.06128 * 16 15 14 36 36 H 1.09006 * 111.00122 * 204.91437 * 16 15 14 37 37 H 1.09003 * 109.46665 * 294.82536 * 18 17 16 38 38 H 1.08999 * 109.47212 * 54.82353 * 18 17 16 39 39 H 0.96697 * 113.99892 * 179.97438 * 19 18 17 40 40 H 1.08001 * 119.99556 * 359.97438 * 21 20 17 41 41 H 1.08006 * 120.00134 * 180.22912 * 22 21 20 42 42 H 1.08000 * 120.00587 * 179.72577 * 23 22 21 43 43 H 1.07999 * 120.00141 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00162 * 0.02562 * 25 20 17 45 45 H 1.09007 * 109.88571 * 298.39420 * 26 14 12 46 46 H 1.08996 * 109.88428 * 59.40822 * 26 14 12 47 47 H 1.08997 * 117.49846 * 214.96852 * 27 9 7 48 48 H 1.09001 * 117.49858 * 359.97438 * 27 9 7 49 49 H 1.09001 * 117.50093 * 359.97438 * 28 9 7 50 50 H 1.09001 * 117.49038 * 144.99849 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0769 -1.1983 -0.1286 9 6 1.2618 -2.4931 0.1776 10 6 0.5860 -2.6859 1.5367 11 7 1.5594 -3.2146 2.4954 12 6 1.1634 -3.5598 3.7366 13 8 -0.0152 -3.5186 4.0323 14 7 2.0741 -3.9507 4.6501 15 6 3.5140 -4.1440 4.3996 16 6 3.9765 -5.1397 5.4926 17 6 3.1280 -4.6838 6.7122 18 6 3.7911 -3.5008 7.4204 19 8 2.9335 -3.0267 8.4605 20 6 2.9090 -5.8262 7.6703 21 6 3.5236 -7.0440 7.4459 22 6 3.3266 -8.0903 8.3275 23 6 2.5068 -7.9222 9.4277 24 6 1.8880 -6.7060 9.6492 25 6 2.0893 -5.6581 8.7705 26 6 1.7962 -4.2540 6.0615 27 6 0.5616 -3.0810 -1.0492 28 6 1.8351 -3.7345 -0.5088 29 1 -0.4850 0.8368 -0.0733 30 1 -0.2416 -3.3878 1.4345 31 1 0.2079 -1.7279 1.8936 32 1 2.4887 -3.3162 2.2369 33 1 3.6730 -4.5683 3.4082 34 1 4.0463 -3.1978 4.4963 35 1 3.7361 -6.1656 5.2135 36 1 5.0421 -5.0308 5.6946 37 1 4.7408 -3.8203 7.8497 38 1 3.9681 -2.7002 6.7022 39 1 3.2912 -2.2756 8.9534 40 1 4.1603 -7.1768 6.5837 41 1 3.8097 -9.0407 8.1543 42 1 2.3493 -8.7411 10.1140 43 1 1.2472 -6.5748 10.5085 44 1 1.6054 -4.7081 8.9432 45 1 1.4086 -3.3667 6.5621 46 1 1.0712 -5.0649 6.1307 47 1 -0.3804 -3.6051 -0.8882 48 1 0.6379 -2.5279 -1.9854 49 1 2.7493 -3.6116 -1.0895 50 1 1.7308 -4.6886 0.0080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000366045851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:35 Heat of formation + Delta-G solvation = -20.066642 kcal Electronic energy + Delta-G solvation = -30497.425949 eV Core-core repulsion = 26490.446403 eV Total energy + Delta-G solvation = -4006.979545 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.72054 -39.19461 -37.81185 -36.74201 -36.14775 -33.39770 -32.71879 -32.03541 -31.17413 -30.03126 -28.78627 -26.75518 -25.69508 -24.79891 -23.60094 -22.82604 -21.94338 -21.22268 -19.57150 -19.35034 -19.28486 -18.03250 -17.44546 -16.89516 -16.30788 -15.98701 -15.44835 -15.14476 -15.05231 -14.79931 -14.65827 -14.41425 -14.01462 -13.74817 -13.58003 -13.41348 -13.00098 -12.91774 -12.84762 -12.68810 -12.47392 -12.18990 -11.82029 -11.61190 -11.57595 -11.47401 -11.24988 -10.99538 -10.92914 -10.89288 -10.73688 -10.52879 -10.29536 -10.12033 -9.71161 -9.44472 -9.04424 -9.03105 -8.86175 -8.59223 -8.48048 -8.20298 -7.90541 -6.07499 -4.14210 1.19337 1.29589 3.03554 3.25679 3.33974 3.35310 3.57501 3.76808 3.88644 4.23334 4.34408 4.35457 4.51459 4.67749 4.84247 4.86825 4.88276 4.95704 5.09459 5.12352 5.15699 5.24295 5.35959 5.39382 5.45447 5.52101 5.55464 5.60818 5.79417 5.86130 5.91525 5.98183 6.00764 6.04352 6.32274 6.34128 6.40687 6.45205 6.49820 6.52520 6.63312 6.70307 6.87702 6.92729 7.06441 7.33678 7.39073 7.43532 7.53393 7.60504 7.84741 8.35497 8.61208 8.85225 9.21979 9.50428 11.00235 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.002577 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.775591 B =10861.366775 C =11476.713382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.072 3.928 3 Si 0.891 3.109 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.036 3.964 10 C 0.181 3.819 11 N -0.724 5.724 12 C 0.717 3.283 13 O -0.596 6.596 14 N -0.642 5.642 15 C 0.099 3.901 16 C -0.124 4.124 17 C -0.030 4.030 18 C 0.095 3.905 19 O -0.566 6.566 20 C -0.066 4.066 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.124 4.124 24 C -0.125 4.125 25 C -0.092 4.092 26 C 0.147 3.853 27 C -0.164 4.164 28 C -0.208 4.208 29 H 0.263 0.737 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.393 0.607 33 H 0.077 0.923 34 H 0.067 0.933 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.049 0.951 38 H 0.055 0.945 39 H 0.379 0.621 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.119 0.881 44 H 0.136 0.864 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.065 0.935 48 H 0.082 0.918 49 H 0.077 0.923 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.171 -12.389 17.717 24.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.509 5.509 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.537 4.537 8 H 0.078 0.922 9 C 0.035 3.965 10 C 0.058 3.942 11 N -0.377 5.377 12 C 0.418 3.582 13 O -0.474 6.474 14 N -0.383 5.383 15 C -0.024 4.024 16 C -0.161 4.161 17 C -0.031 4.031 18 C 0.017 3.983 19 O -0.371 6.371 20 C -0.067 4.067 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.142 4.142 24 C -0.143 4.143 25 C -0.110 4.110 26 C 0.024 3.976 27 C -0.203 4.203 28 C -0.245 4.245 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.226 0.774 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.068 0.932 38 H 0.073 0.927 39 H 0.227 0.773 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.137 0.863 44 H 0.154 0.846 45 H 0.092 0.908 46 H 0.083 0.917 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.096 0.904 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.642 -12.632 17.678 23.770 hybrid contribution 1.256 1.282 -0.056 1.795 sum 10.897 -11.350 17.622 23.625 Atomic orbital electron populations 1.69966 1.05896 1.27017 1.48038 1.24990 0.94802 0.98980 0.94417 0.86621 0.79921 0.83556 0.78093 1.20687 1.21126 1.19840 1.20410 0.93144 0.88772 1.51384 0.92175 1.19073 0.97667 0.91373 0.88420 1.20898 0.88411 0.97656 0.87229 1.45316 1.13331 1.67942 1.11080 1.15550 0.83897 0.78257 0.80457 1.90888 1.15320 1.61576 1.79661 1.47537 1.07358 1.73551 1.09829 1.22253 0.82265 0.98668 0.99253 1.23002 0.99770 1.00149 0.93227 1.20572 0.96254 0.92969 0.93293 1.22049 0.91889 0.94805 0.89509 1.86450 1.47660 1.53310 1.49713 1.19449 0.97894 0.93686 0.95644 1.21182 1.00245 0.92708 0.99543 1.21086 0.99326 0.98774 0.95169 1.21153 0.97700 0.97466 0.97889 1.21187 1.00102 0.93380 0.99679 1.21263 0.97064 0.99280 0.93419 1.21632 0.94881 1.01034 0.80088 1.22708 0.93362 1.03612 1.00580 1.22873 0.97789 0.96989 1.06894 0.92748 0.94289 0.90458 0.77381 0.90487 0.91447 0.89263 0.89421 0.93242 0.92684 0.77320 0.85690 0.86291 0.86456 0.86251 0.84639 0.90760 0.91717 0.91618 0.89982 0.90445 0.91511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.54 12.60 55.43 0.70 -23.84 16 2 C 0.07 1.94 5.22 -17.82 -0.09 1.84 16 3 Si 0.89 20.68 29.55 -169.99 -5.02 15.65 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.50 -13.01 8.82 -34.44 -0.30 -13.32 16 8 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 9 C 0.04 0.85 1.32 -155.66 -0.21 0.64 16 10 C 0.18 4.33 5.53 -4.05 -0.02 4.31 16 11 N -0.72 -14.75 5.42 -65.23 -0.35 -15.10 16 12 C 0.72 14.75 8.48 -86.91 -0.74 14.01 16 13 O -0.60 -14.76 16.66 5.29 0.09 -14.68 16 14 N -0.64 -10.10 3.33 -176.23 -0.59 -10.69 16 15 C 0.10 1.12 6.20 -2.53 -0.02 1.11 16 16 C -0.12 -1.07 5.07 -24.44 -0.12 -1.20 16 17 C -0.03 -0.31 0.60 -153.69 -0.09 -0.40 16 18 C 0.10 0.83 5.89 37.16 0.22 1.05 16 19 O -0.57 -5.05 10.42 -35.23 -0.37 -5.41 16 20 C -0.07 -0.69 4.63 -104.62 -0.48 -1.17 16 21 C -0.12 -1.11 9.00 -39.58 -0.36 -1.47 16 22 C -0.13 -1.10 10.05 -39.59 -0.40 -1.50 16 23 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 24 C -0.13 -1.20 10.05 -39.58 -0.40 -1.60 16 25 C -0.09 -0.99 8.60 -39.59 -0.34 -1.33 16 26 C 0.15 2.09 5.69 -3.06 -0.02 2.07 16 27 C -0.16 -3.75 9.88 -26.73 -0.26 -4.01 16 28 C -0.21 -4.28 9.78 -26.73 -0.26 -4.54 16 29 H 0.26 7.09 8.32 -40.82 -0.34 6.75 16 30 H 0.04 0.96 7.87 -51.93 -0.41 0.55 16 31 H 0.08 2.13 7.26 -51.93 -0.38 1.75 16 32 H 0.39 7.12 6.96 -40.82 -0.28 6.84 16 33 H 0.08 0.83 7.42 -51.92 -0.39 0.44 16 34 H 0.07 0.71 7.73 -51.93 -0.40 0.31 16 35 H 0.09 0.76 6.33 -51.93 -0.33 0.43 16 36 H 0.09 0.55 8.04 -51.93 -0.42 0.13 16 37 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.05 0.49 7.46 -51.93 -0.39 0.10 16 39 H 0.38 1.84 9.12 45.56 0.42 2.25 16 40 H 0.13 0.95 5.86 -52.49 -0.31 0.64 16 41 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 42 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 43 H 0.12 0.93 8.06 -52.49 -0.42 0.50 16 44 H 0.14 1.51 6.44 -52.49 -0.34 1.17 16 45 H 0.07 1.16 7.31 -51.93 -0.38 0.78 16 46 H 0.06 1.02 7.81 -51.93 -0.41 0.61 16 47 H 0.07 1.44 8.06 -51.93 -0.42 1.03 16 48 H 0.08 1.94 8.14 -51.93 -0.42 1.52 16 49 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 50 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 400.70 15.07 6.04 6.04 Total: -1.00 -32.89 400.70 -10.73 -43.61 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: -6.93 Total: 11.40 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -4.29 Total: -6.99 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: -0.24 Total: -49.63 kcal Atomic # 8 Polarization: -19.81 SS G_CDS: -0.28 Total: -20.09 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.89 -10.73 -43.61 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366045851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.546 kcal (2) G-P(sol) polarization free energy of solvation -32.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds