Wall clock time and date at job start Wed Apr 1 2020 03:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86796 * 119.99876 * 2 1 4 4 H 1.48502 * 109.47354 * 270.00079 * 3 2 1 5 5 H 1.48499 * 109.47247 * 30.00106 * 3 2 1 6 6 H 1.48501 * 109.47151 * 150.00011 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99936 * 172.13263 * 7 2 1 9 9 C 1.50708 * 119.99746 * 352.12932 * 7 2 1 10 10 C 1.52995 * 115.54982 * 294.80037 * 9 7 2 11 11 N 1.46497 * 109.47127 * 275.58667 * 10 9 7 12 12 C 1.34778 * 119.99526 * 185.00838 * 11 10 9 13 13 O 1.21588 * 120.00662 * 4.99656 * 12 11 10 14 14 N 1.34782 * 119.99664 * 184.99243 * 12 11 10 15 15 C 1.47422 * 125.64816 * 355.09338 * 14 12 11 16 16 C 1.54913 * 104.83068 * 204.09011 * 15 14 12 17 17 C 1.55407 * 101.66372 * 323.06898 * 16 15 14 18 18 C 1.52998 * 110.69657 * 277.05159 * 17 16 15 19 19 O 1.42901 * 109.46909 * 174.82386 * 18 17 16 20 20 C 1.50699 * 110.84960 * 153.69935 * 17 16 15 21 21 C 1.38239 * 120.00222 * 4.81661 * 20 17 16 22 22 C 1.38230 * 119.99810 * 179.76314 * 21 20 17 23 23 C 1.38232 * 120.00249 * 0.50867 * 22 21 20 24 24 C 1.38242 * 119.99982 * 359.74319 * 23 22 21 25 25 C 1.38230 * 119.99904 * 185.08378 * 20 17 16 26 26 C 1.47018 * 125.64760 * 175.04256 * 14 12 11 27 27 C 1.53000 * 117.51423 * 80.50224 * 9 7 2 28 28 C 1.53002 * 117.49405 * 149.12909 * 9 7 2 29 29 H 0.97001 * 120.00165 * 5.00861 * 1 2 3 30 30 H 1.09003 * 109.46658 * 155.58485 * 10 9 7 31 31 H 1.08998 * 109.47456 * 35.59002 * 10 9 7 32 32 H 0.96994 * 120.00240 * 5.00768 * 11 10 9 33 33 H 1.09008 * 110.36446 * 322.92240 * 15 14 12 34 34 H 1.08996 * 110.37435 * 85.13869 * 15 14 12 35 35 H 1.09001 * 111.00647 * 81.06128 * 16 15 14 36 36 H 1.09006 * 111.00122 * 204.91437 * 16 15 14 37 37 H 1.09003 * 109.46665 * 294.82536 * 18 17 16 38 38 H 1.08999 * 109.47212 * 54.82353 * 18 17 16 39 39 H 0.96697 * 113.99892 * 179.97438 * 19 18 17 40 40 H 1.08001 * 119.99556 * 359.97438 * 21 20 17 41 41 H 1.08006 * 120.00134 * 180.22912 * 22 21 20 42 42 H 1.08000 * 120.00587 * 179.72577 * 23 22 21 43 43 H 1.07999 * 120.00141 * 179.97438 * 24 23 22 44 44 H 1.08000 * 120.00162 * 0.02562 * 25 20 17 45 45 H 1.09007 * 109.88571 * 298.39420 * 26 14 12 46 46 H 1.08996 * 109.88428 * 59.40822 * 26 14 12 47 47 H 1.08997 * 117.49846 * 214.96852 * 27 9 7 48 48 H 1.09001 * 117.49858 * 359.97438 * 27 9 7 49 49 H 1.09001 * 117.50093 * 359.97438 * 28 9 7 50 50 H 1.09001 * 117.49038 * 144.99849 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0769 -1.1983 -0.1286 9 6 1.2618 -2.4931 0.1776 10 6 0.5860 -2.6859 1.5367 11 7 1.5594 -3.2146 2.4954 12 6 1.1634 -3.5598 3.7366 13 8 -0.0152 -3.5186 4.0323 14 7 2.0741 -3.9507 4.6501 15 6 3.5140 -4.1440 4.3996 16 6 3.9765 -5.1397 5.4926 17 6 3.1280 -4.6838 6.7122 18 6 3.7911 -3.5008 7.4204 19 8 2.9335 -3.0267 8.4605 20 6 2.9090 -5.8262 7.6703 21 6 3.5236 -7.0440 7.4459 22 6 3.3266 -8.0903 8.3275 23 6 2.5068 -7.9222 9.4277 24 6 1.8880 -6.7060 9.6492 25 6 2.0893 -5.6581 8.7705 26 6 1.7962 -4.2540 6.0615 27 6 0.5616 -3.0810 -1.0492 28 6 1.8351 -3.7345 -0.5088 29 1 -0.4850 0.8368 -0.0733 30 1 -0.2416 -3.3878 1.4345 31 1 0.2079 -1.7279 1.8936 32 1 2.4887 -3.3162 2.2369 33 1 3.6730 -4.5683 3.4082 34 1 4.0463 -3.1978 4.4963 35 1 3.7361 -6.1656 5.2135 36 1 5.0421 -5.0308 5.6946 37 1 4.7408 -3.8203 7.8497 38 1 3.9681 -2.7002 6.7022 39 1 3.2912 -2.2756 8.9534 40 1 4.1603 -7.1768 6.5837 41 1 3.8097 -9.0407 8.1543 42 1 2.3493 -8.7411 10.1140 43 1 1.2472 -6.5748 10.5085 44 1 1.6054 -4.7081 8.9432 45 1 1.4086 -3.3667 6.5621 46 1 1.0712 -5.0649 6.1307 47 1 -0.3804 -3.6051 -0.8882 48 1 0.6379 -2.5279 -1.9854 49 1 2.7493 -3.6116 -1.0895 50 1 1.7308 -4.6886 0.0080 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000366045851.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:33 Heat of formation + Delta-G solvation = -41.234456 kcal Electronic energy + Delta-G solvation = -30498.343854 eV Core-core repulsion = 26490.446403 eV Total energy + Delta-G solvation = -4007.897451 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.74642 -40.46556 -38.89581 -38.31747 -37.09390 -35.01699 -34.07589 -33.82245 -31.88710 -30.91757 -29.70285 -28.28554 -27.37690 -26.15916 -24.65026 -23.58080 -23.03880 -22.72149 -21.20270 -20.80605 -20.36860 -19.30392 -18.35299 -17.95450 -17.65443 -17.17764 -16.95435 -16.61872 -16.18419 -15.92642 -15.74238 -15.55799 -15.39900 -15.16661 -14.58398 -14.43705 -14.39264 -14.07774 -13.82660 -13.80870 -13.57296 -13.40957 -13.35870 -12.96882 -12.92179 -12.78382 -12.53430 -12.40303 -12.35965 -12.06435 -12.00966 -11.64401 -11.50246 -11.45610 -11.26147 -10.97007 -10.78383 -10.51589 -10.12730 -10.05995 -9.72940 -9.59338 -9.41425 -8.10648 -6.22181 0.48236 0.59235 1.41544 1.44588 1.52887 1.62158 2.15814 2.42022 2.86785 3.05679 3.16212 3.20854 3.44707 3.57759 3.59218 3.80513 4.12211 4.15547 4.21734 4.23815 4.27171 4.29105 4.42822 4.54223 4.54683 4.61880 4.64843 4.67002 4.74322 4.77499 4.78887 4.87315 4.87997 4.95043 4.97368 5.03258 5.09492 5.21983 5.24319 5.27595 5.33809 5.56470 5.57628 5.65943 5.69744 5.71447 5.78956 5.81460 6.10256 6.19377 6.36476 6.82987 6.93112 7.08179 7.45526 7.60613 8.97022 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016947 B = 0.002577 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.775591 B =10861.366775 C =11476.713382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.022 3.978 3 Si 0.951 3.049 4 H -0.275 1.275 5 H -0.293 1.293 6 H -0.262 1.262 7 C -0.504 4.504 8 H 0.065 0.935 9 C 0.010 3.990 10 C 0.201 3.799 11 N -0.714 5.714 12 C 0.710 3.290 13 O -0.648 6.648 14 N -0.636 5.636 15 C 0.089 3.911 16 C -0.111 4.111 17 C -0.021 4.021 18 C 0.096 3.904 19 O -0.584 6.584 20 C -0.079 4.079 21 C -0.123 4.123 22 C -0.130 4.130 23 C -0.129 4.129 24 C -0.137 4.137 25 C -0.111 4.111 26 C 0.148 3.852 27 C -0.175 4.175 28 C -0.169 4.169 29 H 0.259 0.741 30 H 0.024 0.976 31 H 0.033 0.967 32 H 0.406 0.594 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.126 0.874 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.395 0.605 40 H 0.146 0.854 41 H 0.143 0.857 42 H 0.138 0.862 43 H 0.130 0.870 44 H 0.121 0.879 45 H 0.051 0.949 46 H 0.041 0.959 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.859 -14.053 18.219 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.179 4.179 3 Si 0.776 3.224 4 H -0.201 1.201 5 H -0.219 1.219 6 H -0.186 1.186 7 C -0.542 4.542 8 H 0.083 0.917 9 C 0.009 3.991 10 C 0.076 3.924 11 N -0.368 5.368 12 C 0.412 3.588 13 O -0.531 6.531 14 N -0.375 5.375 15 C -0.033 4.033 16 C -0.148 4.148 17 C -0.021 4.021 18 C 0.018 3.982 19 O -0.393 6.393 20 C -0.079 4.079 21 C -0.141 4.141 22 C -0.148 4.148 23 C -0.147 4.147 24 C -0.155 4.155 25 C -0.129 4.129 26 C 0.024 3.976 27 C -0.214 4.214 28 C -0.206 4.206 29 H 0.068 0.932 30 H 0.042 0.958 31 H 0.051 0.949 32 H 0.242 0.758 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.144 0.856 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.245 0.755 40 H 0.164 0.836 41 H 0.161 0.839 42 H 0.156 0.844 43 H 0.148 0.852 44 H 0.139 0.861 45 H 0.069 0.931 46 H 0.060 0.940 47 H 0.086 0.914 48 H 0.088 0.912 49 H 0.110 0.890 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 13.422 -14.313 18.201 26.764 hybrid contribution 0.077 1.744 -0.135 1.751 sum 13.499 -12.569 18.066 25.818 Atomic orbital electron populations 1.70101 1.07418 1.27432 1.49673 1.25743 0.95440 1.02267 0.94428 0.85666 0.78928 0.79565 0.78197 1.20061 1.21936 1.18589 1.20738 0.93478 0.89711 1.50251 0.91655 1.19038 0.99161 0.92486 0.88367 1.20389 0.88831 0.95080 0.88094 1.45007 1.13316 1.67778 1.10714 1.15752 0.83915 0.78228 0.80936 1.90842 1.17983 1.63665 1.80592 1.47528 1.08813 1.71638 1.09487 1.22645 0.79206 1.00414 1.01046 1.23055 1.01498 0.99460 0.90829 1.20534 0.94012 0.93772 0.93814 1.22080 0.92435 0.94133 0.89504 1.86432 1.48506 1.54305 1.50044 1.19508 0.98546 0.94298 0.95585 1.21448 1.00217 0.92128 1.00263 1.21443 0.98963 0.99636 0.94727 1.21469 0.97197 0.97607 0.98388 1.21402 1.00553 0.93618 0.99970 1.21286 0.97885 0.99253 0.94471 1.21674 0.97256 0.99246 0.79385 1.22671 0.94888 1.04275 0.99560 1.22882 0.96888 0.96181 1.04650 0.93167 0.95789 0.94896 0.75801 0.89370 0.90126 0.88666 0.85604 0.90847 0.92879 0.75465 0.83612 0.83923 0.84384 0.85230 0.86113 0.93058 0.94005 0.91438 0.91233 0.88961 0.89375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.55 12.60 21.45 0.27 -52.28 16 2 C 0.02 1.17 5.22 84.65 0.44 1.62 16 3 Si 0.95 42.52 29.55 68.60 2.03 44.55 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 6 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 7 C -0.50 -26.05 8.82 25.60 0.23 -25.83 16 8 H 0.07 3.24 7.83 -2.91 -0.02 3.21 16 9 C 0.01 0.49 1.32 -52.93 -0.07 0.42 16 10 C 0.20 9.88 5.53 86.38 0.48 10.36 16 11 N -0.71 -29.22 5.42 -478.54 -2.59 -31.81 16 12 C 0.71 29.95 8.48 179.05 1.52 31.46 16 13 O -0.65 -33.83 16.66 -3.99 -0.07 -33.90 16 14 N -0.64 -19.91 3.33 -829.74 -2.76 -22.67 16 15 C 0.09 1.78 6.20 86.86 0.54 2.32 16 16 C -0.11 -1.53 5.07 32.08 0.16 -1.37 16 17 C -0.02 -0.39 0.60 -51.65 -0.03 -0.42 16 18 C 0.10 1.50 5.89 71.98 0.42 1.93 16 19 O -0.58 -10.22 10.42 -148.98 -1.55 -11.77 16 20 C -0.08 -1.53 4.63 -19.87 -0.09 -1.62 16 21 C -0.12 -1.95 9.00 22.27 0.20 -1.75 16 22 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 23 C -0.13 -2.01 10.05 22.27 0.22 -1.79 16 24 C -0.14 -2.53 10.05 22.27 0.22 -2.31 16 25 C -0.11 -2.37 8.60 22.27 0.19 -2.18 16 26 C 0.15 4.30 5.69 86.73 0.49 4.79 16 27 C -0.18 -7.97 9.88 30.60 0.30 -7.67 16 28 C -0.17 -6.58 9.78 30.60 0.30 -6.28 16 29 H 0.26 14.47 8.32 -92.71 -0.77 13.70 16 30 H 0.02 1.22 7.87 -2.39 -0.02 1.21 16 31 H 0.03 1.90 7.26 -2.39 -0.02 1.88 16 32 H 0.41 14.17 6.96 -92.71 -0.65 13.53 16 33 H 0.09 1.61 7.42 -2.38 -0.02 1.59 16 34 H 0.08 1.46 7.73 -2.39 -0.02 1.44 16 35 H 0.09 1.25 6.33 -2.39 -0.02 1.24 16 36 H 0.13 0.88 8.04 -2.38 -0.02 0.86 16 37 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.05 0.84 7.46 -2.39 -0.02 0.82 16 39 H 0.40 3.57 9.12 -74.06 -0.68 2.90 16 40 H 0.15 1.62 5.86 -2.91 -0.02 1.60 16 41 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 42 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 43 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 44 H 0.12 2.85 6.44 -2.91 -0.02 2.83 16 45 H 0.05 1.71 7.31 -2.38 -0.02 1.69 16 46 H 0.04 1.39 7.81 -2.39 -0.02 1.37 16 47 H 0.07 2.99 8.06 -2.39 -0.02 2.97 16 48 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 49 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 50 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 Total: -1.00 -74.82 400.70 0.72 -74.10 By element: Atomic # 1 Polarization: 34.15 SS G_CDS: -0.36 Total: 33.80 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: 5.75 Total: -0.01 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -5.08 Total: -106.77 kcal Atomic # 8 Polarization: -44.05 SS G_CDS: -1.62 Total: -45.67 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -74.82 0.72 -74.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000366045851.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.864 kcal (2) G-P(sol) polarization free energy of solvation -74.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds