Wall clock time and date at job start Wed Apr 1 2020 03:52:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31552 * 1 3 3 Si 1.86803 * 120.00182 * 2 1 4 4 H 1.48501 * 109.47083 * 269.99754 * 3 2 1 5 5 H 1.48495 * 109.46835 * 29.99605 * 3 2 1 6 6 H 1.48494 * 109.47188 * 149.99701 * 3 2 1 7 7 C 1.38661 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99961 * 359.97438 * 7 2 1 9 9 O 1.34832 * 120.00165 * 180.02562 * 7 2 1 10 10 C 1.35748 * 117.00061 * 185.05363 * 9 7 2 11 11 C 1.38875 * 120.06753 * 354.46659 * 10 9 7 12 12 C 1.38103 * 119.93056 * 180.02562 * 11 10 9 13 13 C 1.38299 * 120.06758 * 359.97438 * 12 11 10 14 14 C 1.50704 * 119.93084 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47295 * 89.99748 * 14 13 12 16 16 O 1.21279 * 119.99842 * 0.02562 * 15 14 13 17 17 N 1.34771 * 120.00073 * 180.02562 * 15 14 13 18 18 C 1.46500 * 120.00064 * 179.97438 * 17 15 14 19 19 H 1.09002 * 109.24563 * 34.46245 * 18 17 15 20 20 C 1.52822 * 109.24895 * 275.00000 * 18 17 15 21 21 C 1.53635 * 110.64884 * 293.61374 * 20 18 17 22 22 N 1.45534 * 107.86246 * 302.87075 * 21 20 18 23 23 C 1.46584 * 117.17148 * 185.50670 * 22 21 20 24 24 C 1.54798 * 105.84022 * 208.02394 * 23 22 21 25 25 C 1.55328 * 105.08521 * 3.71678 * 24 23 22 26 26 C 1.48662 * 109.71505 * 65.31322 * 22 21 20 27 27 H 1.09006 * 111.10524 * 52.54126 * 26 22 21 28 28 C 1.52366 * 107.93352 * 290.71254 * 26 22 21 29 29 C 1.38298 * 120.13707 * 0.29341 * 13 12 11 30 30 C 1.38098 * 120.06979 * 359.45274 * 29 13 12 31 31 H 0.96999 * 120.00114 * 0.02562 * 1 2 3 32 32 H 1.08003 * 120.04043 * 359.97438 * 11 10 9 33 33 H 1.07999 * 119.96570 * 179.97438 * 12 11 10 34 34 H 1.09004 * 109.46535 * 329.99954 * 14 13 12 35 35 H 1.09001 * 109.46955 * 210.00354 * 14 13 12 36 36 H 0.96999 * 120.00316 * 0.02562 * 17 15 14 37 37 H 1.09003 * 109.23738 * 173.31545 * 20 18 17 38 38 H 1.08993 * 109.20996 * 53.89676 * 20 18 17 39 39 H 1.08996 * 109.78247 * 183.28051 * 21 20 18 40 40 H 1.08997 * 109.78243 * 62.45948 * 21 20 18 41 41 H 1.09001 * 110.18922 * 88.95345 * 23 22 21 42 42 H 1.08994 * 110.22961 * 327.12083 * 23 22 21 43 43 H 1.09000 * 110.33917 * 244.78983 * 24 23 22 44 44 H 1.08997 * 110.33882 * 122.64841 * 24 23 22 45 45 H 1.08997 * 110.91233 * 140.34367 * 25 24 23 46 46 H 1.09001 * 110.91306 * 263.91919 * 25 24 23 47 47 H 1.09000 * 109.83288 * 181.99987 * 28 26 22 48 48 H 1.08997 * 109.83289 * 302.95832 * 28 26 22 49 49 H 1.08007 * 119.96256 * 179.70657 * 29 13 12 50 50 H 1.07999 * 120.03440 * 180.27026 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4971 2.0464 -1.4001 5 1 1.4470 2.6526 0.6999 6 1 3.5470 1.4402 0.7001 7 6 2.0089 -1.2008 0.0005 8 1 1.4689 -2.1361 0.0014 9 8 3.3572 -1.2008 0.0011 10 6 3.9735 -2.4057 -0.1050 11 6 3.2235 -3.5744 -0.0920 12 6 3.8535 -4.7986 -0.1995 13 6 5.2298 -4.8614 -0.3206 14 6 5.9140 -6.1990 -0.4383 15 6 6.0205 -6.5826 -1.8917 16 8 5.5842 -5.8425 -2.7477 17 7 6.6006 -7.7481 -2.2403 18 6 6.7037 -8.1213 -3.6532 19 1 6.8582 -7.2234 -4.2516 20 6 5.4068 -8.8013 -4.0906 21 6 5.2306 -10.1465 -3.3696 22 7 6.3998 -10.9638 -3.6575 23 6 6.3877 -12.3455 -3.1682 24 6 7.8710 -12.7279 -2.9455 25 6 8.6729 -11.4339 -3.2541 26 6 7.6080 -10.3402 -3.0564 27 1 7.4557 -10.1300 -1.9977 28 6 7.9086 -9.0609 -3.8275 29 6 5.9799 -3.6996 -0.3282 30 6 5.3553 -2.4721 -0.2263 31 1 -0.4850 0.8400 -0.0004 32 1 2.1487 -3.5261 0.0029 33 1 3.2709 -5.7079 -0.1891 34 1 5.3335 -6.9521 0.0947 35 1 6.9122 -6.1358 -0.0050 36 1 6.9492 -8.3402 -1.5557 37 1 5.4359 -8.9717 -5.1668 38 1 4.5638 -8.1529 -3.8522 39 1 4.3328 -10.6456 -3.7341 40 1 5.1514 -9.9815 -2.2951 41 1 5.9376 -13.0038 -3.9112 42 1 5.8387 -12.4077 -2.2287 43 1 8.1630 -13.5262 -3.6278 44 1 8.0319 -13.0359 -1.9124 45 1 9.4950 -11.3083 -2.5496 46 1 9.0399 -11.4391 -4.2804 47 1 8.8123 -8.5955 -3.4338 48 1 8.0397 -9.2888 -4.8853 49 1 7.0549 -3.7521 -0.4181 50 1 5.9413 -1.5649 -0.2368 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000374001868.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:52:58 Heat of formation + Delta-G solvation = -56.802429 kcal Electronic energy + Delta-G solvation = -29605.659069 eV Core-core repulsion = 25597.086540 eV Total energy + Delta-G solvation = -4008.572529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.56581 -40.91101 -40.05791 -38.34090 -36.69304 -34.52924 -34.04277 -33.16808 -32.26985 -31.80617 -30.05409 -28.60781 -27.81428 -26.66747 -24.11700 -23.72163 -23.01632 -22.33595 -21.77921 -21.40286 -20.12012 -19.82312 -19.12087 -18.04614 -17.21654 -16.81439 -16.70214 -16.63513 -16.25996 -16.02691 -15.72600 -15.63102 -15.45987 -15.15457 -14.88182 -14.74940 -14.37394 -14.32183 -14.20211 -14.06336 -13.89748 -13.46654 -13.34699 -13.05818 -12.81525 -12.78455 -12.49539 -12.41153 -12.36697 -12.28950 -12.13342 -11.99830 -11.93362 -11.57711 -11.41119 -11.30204 -11.28811 -10.95503 -10.77298 -10.03306 -9.79302 -9.24241 -8.98337 -8.51143 -6.23699 0.58028 0.61730 1.29376 1.34394 1.50691 1.76581 2.27198 2.27839 2.78501 2.98883 3.05621 3.18348 3.56494 3.64653 3.84419 3.96819 4.02246 4.02968 4.06527 4.15494 4.17345 4.24427 4.32589 4.33523 4.42766 4.46737 4.57216 4.67010 4.68770 4.71716 4.80019 4.81185 4.85399 4.96554 4.97449 5.02649 5.04485 5.09852 5.15300 5.17623 5.25066 5.34318 5.37219 5.37722 5.56014 5.61315 5.73581 5.79166 5.90681 6.05545 6.24442 6.28569 6.64617 6.82991 7.39562 7.57749 8.60661 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.027973 B = 0.001885 C = 0.001845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.741489 B =14846.619454 C =15172.103424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.008 3.992 3 Si 0.973 3.027 4 H -0.268 1.268 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.400 4.400 8 H 0.078 0.922 9 O -0.246 6.246 10 C 0.117 3.883 11 C -0.239 4.239 12 C -0.066 4.066 13 C -0.135 4.135 14 C -0.081 4.081 15 C 0.511 3.489 16 O -0.578 6.578 17 N -0.715 5.715 18 C 0.146 3.854 19 H 0.065 0.935 20 C -0.120 4.120 21 C 0.070 3.930 22 N -0.546 5.546 23 C 0.046 3.954 24 C -0.126 4.126 25 C -0.112 4.112 26 C 0.064 3.936 27 H 0.059 0.941 28 C -0.101 4.101 29 C -0.059 4.059 30 C -0.193 4.193 31 H 0.285 0.715 32 H 0.105 0.895 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.135 0.865 36 H 0.411 0.589 37 H 0.075 0.925 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.034 0.966 41 H 0.074 0.926 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.086 0.914 49 H 0.154 0.846 50 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.947 -28.229 -3.907 35.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.190 4.190 3 Si 0.795 3.205 4 H -0.193 1.193 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.476 4.476 8 H 0.096 0.904 9 O -0.154 6.154 10 C 0.068 3.932 11 C -0.258 4.258 12 C -0.084 4.084 13 C -0.136 4.136 14 C -0.120 4.120 15 C 0.299 3.701 16 O -0.457 6.457 17 N -0.369 5.369 18 C 0.041 3.959 19 H 0.083 0.917 20 C -0.159 4.159 21 C -0.059 4.059 22 N -0.272 5.272 23 C -0.082 4.082 24 C -0.164 4.164 25 C -0.150 4.150 26 C -0.044 4.044 27 H 0.077 0.923 28 C -0.139 4.139 29 C -0.077 4.077 30 C -0.212 4.212 31 H 0.094 0.906 32 H 0.123 0.877 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.153 0.847 36 H 0.248 0.752 37 H 0.094 0.906 38 H 0.065 0.935 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.056 0.944 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.093 0.907 47 H 0.109 0.891 48 H 0.104 0.896 49 H 0.172 0.828 50 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 21.515 -27.404 -5.023 35.201 hybrid contribution -1.085 0.655 0.907 1.559 sum 20.430 -26.749 -4.116 33.909 Atomic orbital electron populations 1.69730 1.06886 1.29597 1.50237 1.25317 0.95951 1.02236 0.95534 0.85187 0.78823 0.77275 0.79216 1.19287 1.18880 1.18626 1.20703 0.78172 0.96081 1.52676 0.90422 1.83506 1.21186 1.27441 1.83255 1.19680 0.93300 0.85056 0.95146 1.21244 1.00025 0.93380 1.11151 1.20892 0.94825 0.96033 0.96648 1.19297 0.92751 0.95197 1.06397 1.20563 1.04466 0.94516 0.92440 1.21127 0.76436 0.80697 0.91851 1.90757 1.48613 1.52801 1.53532 1.46084 1.61036 1.20971 1.08802 1.21022 0.95316 0.97456 0.82125 0.91701 1.21874 0.97373 0.95435 1.01214 1.21783 0.93326 0.92952 0.97790 1.62814 1.03408 1.01995 1.58996 1.22600 0.97912 0.89206 0.98476 1.22624 0.93065 0.98293 1.02371 1.22378 0.96786 0.93042 1.02837 1.22618 0.90933 0.94398 0.96437 0.92273 1.21785 0.96270 0.93523 1.02348 1.20949 1.00402 0.90196 0.96144 1.20513 0.90540 0.99870 1.10296 0.90560 0.87694 0.85182 0.85976 0.84740 0.75154 0.90606 0.93457 0.91122 0.94738 0.90715 0.94363 0.90478 0.90564 0.89483 0.90694 0.89108 0.89574 0.82821 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.95 13.96 21.61 0.30 -56.64 16 2 C 0.01 0.46 5.49 84.84 0.47 0.93 16 3 Si 0.97 47.15 28.62 68.60 1.96 49.11 16 4 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 5 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.26 -12.63 7.11 99.48 0.71 -11.92 16 7 C -0.40 -24.71 9.95 67.92 0.68 -24.03 16 8 H 0.08 5.04 5.44 -2.91 -0.02 5.03 16 9 O -0.25 -14.10 8.59 -22.74 -0.20 -14.30 16 10 C 0.12 5.84 6.65 22.57 0.15 5.99 16 11 C -0.24 -11.29 9.17 22.39 0.21 -11.09 16 12 C -0.07 -2.45 9.69 22.25 0.22 -2.23 16 13 C -0.14 -4.18 4.38 -19.83 -0.09 -4.27 16 14 C -0.08 -1.53 5.83 29.10 0.17 -1.36 16 15 C 0.51 11.90 7.78 87.66 0.68 12.58 16 16 O -0.58 -20.44 15.68 -3.03 -0.05 -20.49 16 17 N -0.71 -10.94 4.61 -441.55 -2.04 -12.98 16 18 C 0.15 2.44 2.75 45.20 0.12 2.56 16 19 H 0.06 1.45 7.55 -2.39 -0.02 1.43 16 20 C -0.12 -2.22 5.69 30.75 0.17 -2.04 16 21 C 0.07 1.06 5.71 86.77 0.50 1.55 16 22 N -0.55 -6.99 4.67 -865.32 -4.04 -11.03 16 23 C 0.05 0.47 6.87 86.98 0.60 1.07 16 24 C -0.13 -0.87 6.98 32.01 0.22 -0.65 16 25 C -0.11 -0.77 6.61 31.71 0.21 -0.56 16 26 C 0.06 0.60 2.44 44.68 0.11 0.70 16 27 H 0.06 0.48 6.55 -2.38 -0.02 0.46 16 28 C -0.10 -1.07 5.36 30.65 0.16 -0.91 16 29 C -0.06 -1.91 9.69 22.25 0.22 -1.69 16 30 C -0.19 -7.88 9.99 22.39 0.22 -7.65 16 31 H 0.28 16.05 8.31 -92.71 -0.77 15.28 16 32 H 0.11 5.44 5.64 -2.91 -0.02 5.42 16 33 H 0.13 4.10 8.06 -2.91 -0.02 4.08 16 34 H 0.12 1.69 8.08 -2.38 -0.02 1.67 16 35 H 0.13 1.56 8.08 -2.39 -0.02 1.54 16 36 H 0.41 3.62 6.99 -92.71 -0.65 2.97 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.03 0.51 7.85 -2.39 -0.02 0.49 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.04 0.40 8.05 -2.39 -0.02 0.38 16 43 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 45 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 46 H 0.07 0.58 8.11 -2.39 -0.02 0.56 16 47 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 49 H 0.15 3.66 8.06 -2.91 -0.02 3.63 16 50 H 0.13 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -78.61 396.57 1.26 -77.36 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: 0.29 Total: 20.06 kcal Atomic # 6 Polarization: -36.11 SS G_CDS: 5.02 Total: -31.09 kcal Atomic # 7 Polarization: -74.87 SS G_CDS: -5.78 Total: -80.65 kcal Atomic # 8 Polarization: -34.54 SS G_CDS: -0.24 Total: -34.79 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 1.96 Total: 49.11 kcal Total: -78.61 1.26 -77.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374001868.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.557 kcal (2) G-P(sol) polarization free energy of solvation -78.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds