Wall clock time and date at job start Wed Apr 1 2020 03:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86801 * 120.00028 * 2 1 4 4 H 1.48502 * 109.47404 * 270.00293 * 3 2 1 5 5 H 1.48499 * 109.46935 * 30.00185 * 3 2 1 6 6 H 1.48497 * 109.47467 * 150.00471 * 3 2 1 7 7 C 1.38647 * 120.00082 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00432 * 179.97438 * 7 2 1 9 9 O 1.34826 * 120.00058 * 359.97438 * 7 2 1 10 10 C 1.35758 * 117.00210 * 185.05632 * 9 7 2 11 11 C 1.38875 * 120.06517 * 354.46617 * 10 9 7 12 12 C 1.38108 * 119.92952 * 180.02562 * 11 10 9 13 13 C 1.38301 * 120.06736 * 0.02562 * 12 11 10 14 14 C 1.50694 * 119.93012 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46901 * 90.00130 * 14 13 12 16 16 O 1.21281 * 120.00283 * 0.02562 * 15 14 13 17 17 N 1.34781 * 119.99910 * 179.97438 * 15 14 13 18 18 C 1.46499 * 119.99847 * 180.02562 * 17 15 14 19 19 H 1.08997 * 109.21598 * 325.56508 * 18 17 15 20 20 C 1.52821 * 109.24844 * 85.00598 * 18 17 15 21 21 C 1.53637 * 110.64720 * 174.16036 * 20 18 17 22 22 N 1.45535 * 107.85962 * 302.86492 * 21 20 18 23 23 C 1.46335 * 117.21873 * 185.54088 * 22 21 20 24 24 C 1.54801 * 105.96552 * 208.06596 * 23 22 21 25 25 C 1.55334 * 104.98823 * 3.64568 * 24 23 22 26 26 C 1.48657 * 109.71286 * 65.31907 * 22 21 20 27 27 H 1.09005 * 111.11288 * 52.54271 * 26 22 21 28 28 C 1.52288 * 109.42675 * 206.40770 * 18 17 15 29 29 C 1.38300 * 120.13606 * 0.25571 * 13 12 11 30 30 C 1.38099 * 120.07319 * 359.44573 * 29 13 12 31 31 H 0.97005 * 120.00183 * 359.97438 * 1 2 3 32 32 H 1.08000 * 120.04133 * 359.97438 * 11 10 9 33 33 H 1.07996 * 119.96526 * 179.97438 * 12 11 10 34 34 H 1.09003 * 109.47691 * 330.00179 * 14 13 12 35 35 H 1.09007 * 109.47328 * 210.00068 * 14 13 12 36 36 H 0.97000 * 120.00035 * 0.02562 * 17 15 14 37 37 H 1.09000 * 109.24290 * 53.86082 * 20 18 17 38 38 H 1.09001 * 109.21185 * 294.43545 * 20 18 17 39 39 H 1.09000 * 109.78649 * 183.27788 * 21 20 18 40 40 H 1.08999 * 109.83079 * 62.47848 * 21 20 18 41 41 H 1.09000 * 110.15937 * 327.19292 * 23 22 21 42 42 H 1.09002 * 110.14945 * 88.87290 * 23 22 21 43 43 H 1.08996 * 110.34099 * 122.52630 * 24 23 22 44 44 H 1.09006 * 110.33748 * 244.77177 * 24 23 22 45 45 H 1.08994 * 110.91046 * 263.99861 * 25 24 23 46 46 H 1.08999 * 110.90342 * 140.39148 * 25 24 23 47 47 H 1.09004 * 109.95947 * 63.57632 * 28 18 17 48 48 H 1.08998 * 109.02142 * 303.05271 * 28 18 17 49 49 H 1.08007 * 119.96585 * 179.70567 * 29 13 12 50 50 H 1.07994 * 120.03782 * 180.27591 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4970 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.6999 7 6 2.0088 -1.2007 -0.0005 8 1 3.0889 -1.2008 -0.0010 9 8 1.3347 -2.3684 -0.0005 10 6 2.0700 -3.5046 0.1055 11 6 3.4572 -3.4394 0.0921 12 6 4.2025 -4.5971 0.1996 13 6 3.5688 -5.8205 0.3201 14 6 4.3851 -7.0818 0.4367 15 6 4.6645 -7.3668 1.8899 16 8 4.2420 -6.6195 2.7466 17 7 5.3831 -8.4527 2.2376 18 6 5.6542 -8.7300 3.6503 19 1 5.7781 -7.7875 4.1836 20 6 4.4752 -9.4963 4.2486 21 6 4.7863 -9.9308 5.6891 22 7 6.0007 -10.7323 5.6610 23 6 6.4177 -11.3597 6.9156 24 6 7.9572 -11.4984 6.8312 25 6 8.3489 -10.8188 5.4905 26 6 7.1491 -9.8882 5.2384 27 1 7.2190 -8.9869 5.8475 28 6 6.9395 -9.5380 3.7703 29 6 2.1875 -5.8892 0.3280 30 6 1.4367 -4.7346 0.2270 31 1 -0.4851 0.8401 0.0004 32 1 3.9527 -2.4845 -0.0032 33 1 5.2813 -4.5471 0.1888 34 1 5.3274 -6.9555 -0.0965 35 1 3.8311 -7.9145 0.0031 36 1 5.7208 -9.0506 1.5525 37 1 4.2759 -10.3798 3.6421 38 1 3.5938 -8.8549 4.2494 39 1 3.9612 -10.5250 6.0816 40 1 4.9388 -9.0520 6.3156 41 1 6.1433 -10.7284 7.7607 42 1 5.9560 -12.3421 7.0157 43 1 8.4303 -10.9853 7.6684 44 1 8.2428 -12.5503 6.8203 45 1 8.4433 -11.5564 4.6935 46 1 9.2696 -10.2457 5.5994 47 1 7.7830 -8.9517 3.4060 48 1 6.8414 -10.4509 3.1828 49 1 1.6955 -6.8465 0.4174 50 1 0.3581 -4.7885 0.2377 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374001878.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:53:03 Heat of formation + Delta-G solvation = -39.171064 kcal Electronic energy + Delta-G solvation = -29207.901337 eV Core-core repulsion = 25200.093362 eV Total energy + Delta-G solvation = -4007.807975 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.60921 -39.52173 -38.70337 -36.60982 -35.80337 -33.46153 -32.45957 -32.07882 -31.11672 -30.08828 -29.26005 -27.57635 -26.31259 -25.03162 -23.37203 -22.13708 -21.90868 -21.34871 -20.71505 -20.43784 -19.78560 -17.92097 -17.04267 -16.83217 -16.38972 -16.17345 -15.86162 -15.35286 -15.10231 -14.59386 -14.42717 -14.33425 -13.99567 -13.80222 -13.66467 -13.50837 -13.31248 -13.24147 -12.99864 -12.75462 -12.64495 -12.45024 -11.93617 -11.81954 -11.67811 -11.55898 -11.46483 -11.43227 -11.21935 -11.04663 -10.91724 -10.83506 -10.74641 -10.69569 -10.56017 -10.38801 -9.62688 -9.26832 -9.07898 -8.77136 -8.69471 -8.08722 -7.10096 -6.39643 -3.98116 2.31029 2.32648 2.83424 3.14084 3.16814 3.21361 3.23286 3.56099 4.01349 4.12613 4.25650 4.51538 4.54456 4.59700 4.72148 4.83953 4.90758 4.97653 5.03554 5.12250 5.14205 5.16256 5.23209 5.31942 5.37252 5.38554 5.39598 5.43942 5.44304 5.50555 5.58715 5.62676 5.72427 5.75439 5.78998 5.79070 5.91016 5.92794 6.06324 6.27742 6.46262 6.48148 6.58270 6.76720 6.87496 6.97837 7.11429 7.30108 7.43347 7.50019 7.54658 7.90459 8.05773 8.39787 9.06155 9.77258 10.78580 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.021303 B = 0.001791 C = 0.001758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.073052 B =15629.977783 C =15919.020738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.864 5.864 2 C 0.038 3.962 3 Si 0.941 3.059 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.268 1.268 7 C -0.390 4.390 8 H 0.092 0.908 9 O -0.179 6.179 10 C 0.156 3.844 11 C -0.232 4.232 12 C -0.057 4.057 13 C -0.169 4.169 14 C -0.080 4.080 15 C 0.509 3.491 16 O -0.520 6.520 17 N -0.737 5.737 18 C 0.146 3.854 19 H 0.081 0.919 20 C -0.124 4.124 21 C 0.063 3.937 22 N -0.538 5.538 23 C 0.049 3.951 24 C -0.128 4.128 25 C -0.114 4.114 26 C 0.068 3.932 27 H 0.056 0.944 28 C -0.111 4.111 29 C -0.060 4.060 30 C -0.191 4.191 31 H 0.269 0.731 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.397 0.603 37 H 0.071 0.929 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.036 0.964 41 H 0.038 0.962 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.077 0.923 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.078 0.922 49 H 0.108 0.892 50 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.628 -24.323 8.708 30.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.192 1.192 7 C -0.467 4.467 8 H 0.109 0.891 9 O -0.083 6.083 10 C 0.103 3.897 11 C -0.252 4.252 12 C -0.075 4.075 13 C -0.170 4.170 14 C -0.120 4.120 15 C 0.296 3.704 16 O -0.394 6.394 17 N -0.389 5.389 18 C 0.042 3.958 19 H 0.099 0.901 20 C -0.163 4.163 21 C -0.065 4.065 22 N -0.264 5.264 23 C -0.079 4.079 24 C -0.167 4.167 25 C -0.152 4.152 26 C -0.040 4.040 27 H 0.074 0.926 28 C -0.149 4.149 29 C -0.078 4.078 30 C -0.211 4.211 31 H 0.079 0.921 32 H 0.144 0.856 33 H 0.121 0.879 34 H 0.109 0.891 35 H 0.110 0.890 36 H 0.231 0.769 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.054 0.946 41 H 0.057 0.943 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.091 0.909 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.092 0.908 48 H 0.097 0.903 49 H 0.126 0.874 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.717 -23.902 8.990 29.986 hybrid contribution 0.701 1.144 0.398 1.400 sum 16.418 -22.758 9.388 29.591 Atomic orbital electron populations 1.70043 1.05930 1.27558 1.46368 1.25279 0.95842 0.98794 0.96664 0.85719 0.78944 0.80162 0.78640 1.19918 1.20287 1.19225 1.21322 0.91790 0.80871 1.52671 0.89112 1.83976 1.34339 1.11443 1.78502 1.19379 0.90290 0.88026 0.92049 1.21104 0.93816 0.98751 1.11501 1.20506 0.98008 0.91796 0.97232 1.18635 0.93203 0.92798 1.12345 1.20413 1.01155 0.98044 0.92396 1.21068 0.77300 0.79917 0.92113 1.90742 1.49520 1.47129 1.52020 1.46166 1.57017 1.27957 1.07804 1.20649 0.93886 0.98790 0.82519 0.90098 1.21977 0.98698 1.00362 0.95223 1.21902 0.92309 0.95455 0.96868 1.62798 1.02908 1.31593 1.29050 1.22493 0.95379 0.99578 0.90454 1.22632 0.94847 1.01469 0.97702 1.22344 0.96797 0.98420 0.97623 1.22495 0.90869 0.94927 0.95714 0.92595 1.21522 0.96857 1.00492 0.96012 1.20399 0.92784 0.96686 0.97964 1.20153 0.99473 0.90296 1.11138 0.92097 0.85623 0.87871 0.89082 0.89015 0.76888 0.91015 0.90768 0.90484 0.94589 0.94344 0.90444 0.91477 0.90906 0.90427 0.90989 0.90844 0.90349 0.87413 0.86574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.92 13.67 55.48 0.76 -25.16 16 2 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 3 Si 0.94 21.07 29.55 -169.99 -5.02 16.04 16 4 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 6 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 7 C -0.39 -11.25 9.49 30.88 0.29 -10.96 16 8 H 0.09 2.43 5.20 -52.48 -0.27 2.16 16 9 O -0.18 -5.30 9.76 0.04 0.00 -5.29 16 10 C 0.16 3.96 6.65 -39.11 -0.26 3.70 16 11 C -0.23 -5.32 9.17 -39.39 -0.36 -5.68 16 12 C -0.06 -1.11 9.69 -39.61 -0.38 -1.49 16 13 C -0.17 -2.99 4.38 -104.58 -0.46 -3.45 16 14 C -0.08 -1.01 5.83 -29.04 -0.17 -1.18 16 15 C 0.51 7.02 7.78 -10.98 -0.09 6.94 16 16 O -0.52 -9.84 15.68 5.56 0.09 -9.76 16 17 N -0.74 -7.18 5.05 -54.25 -0.27 -7.45 16 18 C 0.15 1.43 2.48 -68.39 -0.17 1.26 16 19 H 0.08 1.01 7.54 -51.93 -0.39 0.62 16 20 C -0.12 -1.22 5.62 -26.49 -0.15 -1.36 16 21 C 0.06 0.56 5.85 -4.23 -0.02 0.54 16 22 N -0.54 -4.35 4.66 -225.05 -1.05 -5.40 16 23 C 0.05 0.33 6.86 -3.18 -0.02 0.31 16 24 C -0.13 -0.70 6.99 -24.54 -0.17 -0.88 16 25 C -0.11 -0.66 6.63 -25.01 -0.17 -0.83 16 26 C 0.07 0.51 2.63 -66.58 -0.17 0.33 16 27 H 0.06 0.47 8.06 -51.93 -0.42 0.05 16 28 C -0.11 -0.80 5.08 -27.41 -0.14 -0.94 16 29 C -0.06 -1.13 9.69 -39.61 -0.38 -1.52 16 30 C -0.19 -4.27 9.99 -39.40 -0.39 -4.67 16 31 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 32 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 33 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.09 0.93 8.08 -51.93 -0.42 0.51 16 35 H 0.09 0.93 8.08 -51.92 -0.42 0.51 16 36 H 0.40 2.63 8.61 -40.82 -0.35 2.28 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 40 H 0.04 0.34 8.05 -51.93 -0.42 -0.08 16 41 H 0.04 0.26 8.04 -51.93 -0.42 -0.15 16 42 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.08 0.44 8.12 -51.93 -0.42 0.02 16 46 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 50 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 401.17 15.07 6.05 6.05 Total: -1.00 -34.53 401.17 -10.80 -45.34 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -8.04 Total: 4.53 kcal Atomic # 6 Polarization: -15.58 SS G_CDS: -3.31 Total: -18.89 kcal Atomic # 7 Polarization: -37.45 SS G_CDS: -0.56 Total: -38.01 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: 0.09 Total: -15.05 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.04 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.53 -10.80 -45.34 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374001878.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.166 kcal (2) G-P(sol) polarization free energy of solvation -34.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds