Wall clock time and date at job start Wed Apr 1 2020 03:05:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00173 * 2 1 4 4 H 1.48507 * 109.47034 * 240.00202 * 3 2 1 5 5 H 1.48496 * 109.47071 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47204 * 120.00165 * 3 2 1 7 7 C 1.37884 * 120.00124 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00178 * 174.48512 * 7 2 1 9 9 C 1.50704 * 119.99722 * 354.49273 * 7 2 1 10 10 C 1.53005 * 115.54675 * 295.66133 * 9 7 2 11 11 N 1.46496 * 109.47305 * 279.57515 * 10 9 7 12 12 C 1.34771 * 120.00194 * 184.88285 * 11 10 9 13 13 O 1.21586 * 119.99878 * 5.51661 * 12 11 10 14 14 N 1.34777 * 119.99994 * 185.52454 * 12 11 10 15 15 C 1.46921 * 120.63144 * 5.32191 * 14 12 11 16 16 C 1.52763 * 109.00990 * 233.58917 * 15 14 12 17 17 C 1.53041 * 109.38232 * 305.58627 * 16 15 14 18 18 O 1.42895 * 109.46583 * 301.22036 * 17 16 15 19 19 C 1.50697 * 109.45581 * 181.25674 * 17 16 15 20 20 C 1.38232 * 120.00781 * 269.65923 * 19 17 16 21 21 C 1.38230 * 120.00272 * 179.74819 * 20 19 17 22 22 C 1.38230 * 120.00061 * 0.52925 * 21 20 19 23 23 C 1.38238 * 120.00107 * 359.74929 * 22 21 20 24 24 C 1.38237 * 119.99678 * 359.97438 * 23 22 21 25 25 C 1.53037 * 109.53571 * 61.24472 * 17 16 15 26 26 C 1.46929 * 120.63045 * 185.61327 * 14 12 11 27 27 C 1.52999 * 117.51918 * 81.36181 * 9 7 2 28 28 C 1.52995 * 117.50140 * 149.99484 * 9 7 2 29 29 H 0.97006 * 119.99565 * 5.05145 * 1 2 3 30 30 H 1.09005 * 109.46788 * 39.57796 * 10 9 7 31 31 H 1.08998 * 109.46773 * 159.57513 * 10 9 7 32 32 H 0.97001 * 119.99491 * 4.87711 * 11 10 9 33 33 H 1.09003 * 109.58826 * 353.42625 * 15 14 12 34 34 H 1.09001 * 109.58594 * 113.84856 * 15 14 12 35 35 H 1.09008 * 109.56155 * 185.55523 * 16 15 14 36 36 H 1.09002 * 109.36058 * 65.50320 * 16 15 14 37 37 H 0.96699 * 114.00208 * 300.07277 * 18 17 16 38 38 H 1.08008 * 119.99488 * 0.02562 * 20 19 17 39 39 H 1.08006 * 120.00222 * 180.30482 * 21 20 19 40 40 H 1.08000 * 119.99950 * 179.76703 * 22 21 20 41 41 H 1.08001 * 120.00059 * 179.97438 * 23 22 21 42 42 H 1.07994 * 119.99467 * 179.97438 * 24 23 22 43 43 H 1.09000 * 109.50171 * 178.68265 * 25 17 16 44 44 H 1.09004 * 109.50237 * 58.57958 * 25 17 16 45 45 H 1.09003 * 109.58497 * 246.15652 * 26 14 12 46 46 H 1.08999 * 109.58727 * 6.57121 * 26 14 12 47 47 H 1.08997 * 117.49583 * 214.97015 * 27 9 7 48 48 H 1.09001 * 117.50081 * 359.97438 * 27 9 7 49 49 H 1.09007 * 117.49749 * 359.97116 * 28 9 7 50 50 H 1.08999 * 117.50126 * 144.96942 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0807 -1.1963 -0.0893 9 6 1.2562 -2.4961 0.1264 10 6 0.5155 -2.7063 1.4486 11 7 1.4620 -3.1552 2.4726 12 6 1.0168 -3.4996 3.6972 13 8 -0.1775 -3.5344 3.9222 14 7 1.8955 -3.8053 4.6723 15 6 3.3404 -3.6560 4.4518 16 6 4.0335 -4.9763 4.7833 17 6 3.6551 -5.4063 6.2025 18 8 4.0452 -4.3898 7.1280 19 6 4.3622 -6.6928 6.5426 20 6 3.7590 -7.9063 6.2696 21 6 4.4100 -9.0864 6.5768 22 6 5.6596 -9.0530 7.1670 23 6 6.2604 -7.8396 7.4452 24 6 5.6118 -6.6595 7.1328 25 6 2.1418 -5.6188 6.2865 26 6 1.4270 -4.3004 5.9739 27 6 0.6176 -3.0697 -1.1401 28 6 1.8644 -3.7284 -0.5462 29 1 -0.4850 0.8369 -0.0740 30 1 0.0587 -1.7676 1.7623 31 1 -0.2598 -3.4607 1.3147 32 1 2.4092 -3.2046 2.2693 33 1 3.5262 -3.3990 3.4089 34 1 3.7294 -2.8697 5.0989 35 1 5.1140 -4.8478 4.7180 36 1 3.7140 -5.7401 4.0743 37 1 4.9937 -4.2020 7.1291 38 1 2.7809 -7.9323 5.8122 39 1 3.9408 -10.0345 6.3591 40 1 6.1665 -9.9751 7.4105 41 1 7.2365 -7.8135 7.9067 42 1 6.0811 -5.7115 7.3506 43 1 1.8758 -5.9475 7.2911 44 1 1.8401 -6.3765 5.5633 45 1 1.6567 -3.5678 6.7477 46 1 0.3508 -4.4685 5.9351 47 1 -0.3302 -3.5969 -1.0314 48 1 0.7383 -2.5052 -2.0647 49 1 2.8056 -3.5973 -1.0803 50 1 1.7372 -4.6888 -0.0467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000374021014.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:11 Heat of formation + Delta-G solvation = -20.118195 kcal Electronic energy + Delta-G solvation = -30657.183751 eV Core-core repulsion = 26650.201970 eV Total energy + Delta-G solvation = -4006.981781 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.77331 -39.46173 -37.91357 -36.73537 -35.29666 -33.43970 -32.56753 -32.05125 -31.32668 -30.90659 -29.99831 -26.41558 -25.41994 -24.60615 -23.58154 -22.69590 -22.00635 -21.23595 -20.54005 -19.38168 -19.12522 -17.94371 -17.85211 -16.22376 -16.12637 -15.80419 -15.59457 -15.35870 -15.02948 -14.67169 -14.44408 -14.38097 -14.03052 -13.96910 -13.69340 -13.50023 -13.35324 -13.19853 -12.74658 -12.59687 -12.28408 -12.11776 -11.85689 -11.60761 -11.60131 -11.44998 -11.38521 -11.17278 -10.98690 -10.90008 -10.61214 -10.53640 -10.30041 -10.21544 -9.68134 -9.41665 -9.23569 -9.01723 -9.01423 -8.60593 -8.47875 -8.22157 -7.87948 -6.07381 -4.15039 1.01071 1.08408 3.10873 3.27290 3.33875 3.34416 3.42587 3.77150 4.02805 4.24280 4.34968 4.38349 4.46403 4.58684 4.68196 4.74319 4.81907 4.99249 5.12344 5.14996 5.19819 5.26646 5.37119 5.40520 5.44703 5.52797 5.62615 5.68880 5.71045 5.74172 5.92608 5.93546 6.03012 6.12410 6.15473 6.21027 6.30650 6.32515 6.49755 6.63088 6.66523 6.70271 6.74183 6.94860 7.05693 7.33489 7.36105 7.40299 7.53966 7.58775 7.85091 8.34983 8.62481 8.84726 9.23140 9.50130 11.00172 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016114 B = 0.002564 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.213050 B =10918.696682 C =11086.602149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.073 3.927 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.500 4.500 8 H 0.060 0.940 9 C 0.037 3.963 10 C 0.179 3.821 11 N -0.725 5.725 12 C 0.702 3.298 13 O -0.600 6.600 14 N -0.633 5.633 15 C 0.119 3.881 16 C -0.155 4.155 17 C 0.178 3.822 18 O -0.546 6.546 19 C -0.104 4.104 20 C -0.111 4.111 21 C -0.118 4.118 22 C -0.124 4.124 23 C -0.118 4.118 24 C -0.113 4.113 25 C -0.118 4.118 26 C 0.137 3.863 27 C -0.166 4.166 28 C -0.208 4.208 29 H 0.263 0.737 30 H 0.081 0.919 31 H 0.037 0.963 32 H 0.392 0.608 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.373 0.627 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.081 0.919 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.065 0.935 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.385 -15.388 14.495 24.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.538 4.538 8 H 0.078 0.922 9 C 0.036 3.964 10 C 0.055 3.945 11 N -0.380 5.380 12 C 0.403 3.597 13 O -0.479 6.479 14 N -0.372 5.372 15 C -0.005 4.005 16 C -0.194 4.194 17 C 0.137 3.863 18 O -0.352 6.352 19 C -0.105 4.105 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.142 4.142 23 C -0.136 4.136 24 C -0.131 4.131 25 C -0.156 4.156 26 C 0.013 3.987 27 C -0.205 4.205 28 C -0.246 4.246 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.228 0.772 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.221 0.779 38 H 0.144 0.856 39 H 0.140 0.860 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.138 0.862 43 H 0.100 0.900 44 H 0.099 0.901 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.084 0.916 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.652 -15.219 14.807 23.756 hybrid contribution 1.681 0.749 -0.359 1.875 sum 12.333 -14.470 14.449 23.880 Atomic orbital electron populations 1.69938 1.05884 1.27158 1.48022 1.24984 0.94817 0.98960 0.94369 0.86675 0.79650 0.83172 0.78591 1.20309 1.21231 1.20150 1.20387 0.92681 0.88695 1.52022 0.92235 1.19065 0.97286 0.91409 0.88668 1.20884 0.89138 0.98478 0.85957 1.45440 1.11674 1.70167 1.10681 1.15956 0.84803 0.78228 0.80691 1.90858 1.14167 1.61012 1.81888 1.47211 1.05282 1.71041 1.13704 1.21386 0.80765 0.96443 1.01943 1.22539 1.01010 0.99200 0.96645 1.19936 0.94405 0.83804 0.88141 1.86623 1.29078 1.57451 1.62026 1.20544 0.95216 0.95666 0.99053 1.21138 1.00129 0.91778 0.99854 1.21185 0.95301 0.98211 0.98873 1.21177 0.95691 0.97934 0.99363 1.21116 0.99900 0.92477 1.00121 1.20875 0.94617 0.98373 0.99264 1.22022 0.91730 0.99029 1.02863 1.21266 0.99751 0.93888 0.83796 1.22712 0.93982 1.03669 1.00112 1.22874 0.97437 0.96987 1.07273 0.92672 0.90116 0.94475 0.77200 0.89802 0.91008 0.90401 0.90271 0.77942 0.85579 0.85965 0.86162 0.86051 0.86182 0.90050 0.90056 0.91224 0.88953 0.91600 0.90028 0.90491 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.44 12.34 55.43 0.68 -23.76 16 2 C 0.07 1.94 5.28 -17.82 -0.09 1.85 16 3 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 4 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.50 -12.95 8.84 -34.44 -0.30 -13.25 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.04 0.86 1.31 -155.66 -0.20 0.66 16 10 C 0.18 4.23 5.49 -4.04 -0.02 4.21 16 11 N -0.73 -14.62 5.41 -65.23 -0.35 -14.98 16 12 C 0.70 14.05 8.29 -86.92 -0.72 13.33 16 13 O -0.60 -14.28 15.76 5.29 0.08 -14.19 16 14 N -0.63 -9.74 2.98 -178.76 -0.53 -10.27 16 15 C 0.12 1.45 6.17 -3.93 -0.02 1.42 16 16 C -0.16 -1.50 5.05 -26.83 -0.14 -1.64 16 17 C 0.18 1.69 0.84 -91.73 -0.08 1.61 16 18 O -0.55 -5.13 11.44 -35.23 -0.40 -5.53 16 19 C -0.10 -0.94 4.84 -104.62 -0.51 -1.45 16 20 C -0.11 -0.99 9.14 -39.59 -0.36 -1.35 16 21 C -0.12 -0.95 10.05 -39.59 -0.40 -1.34 16 22 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 23 C -0.12 -0.88 10.05 -39.58 -0.40 -1.28 16 24 C -0.11 -0.90 9.32 -39.58 -0.37 -1.27 16 25 C -0.12 -1.26 4.36 -26.61 -0.12 -1.38 16 26 C 0.14 1.86 6.18 -3.71 -0.02 1.83 16 27 C -0.17 -3.76 9.88 -26.73 -0.26 -4.03 16 28 C -0.21 -4.27 9.91 -26.73 -0.26 -4.54 16 29 H 0.26 7.11 8.32 -40.82 -0.34 6.77 16 30 H 0.08 2.21 7.06 -51.93 -0.37 1.85 16 31 H 0.04 0.90 7.90 -51.93 -0.41 0.49 16 32 H 0.39 7.11 5.98 -40.82 -0.24 6.86 16 33 H 0.08 1.05 5.58 -51.93 -0.29 0.76 16 34 H 0.07 0.84 7.81 -51.93 -0.41 0.43 16 35 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.37 2.25 7.33 45.56 0.33 2.58 16 38 H 0.13 1.05 6.19 -52.48 -0.33 0.73 16 39 H 0.12 0.76 8.06 -52.48 -0.42 0.34 16 40 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 41 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 42 H 0.12 0.70 6.49 -52.49 -0.34 0.36 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.08 0.86 6.60 -51.93 -0.34 0.51 16 45 H 0.07 0.94 7.81 -51.93 -0.41 0.54 16 46 H 0.09 1.40 7.04 -51.93 -0.37 1.03 16 47 H 0.07 1.43 8.08 -51.93 -0.42 1.01 16 48 H 0.08 1.91 8.14 -51.93 -0.42 1.49 16 49 H 0.08 1.53 8.14 -51.92 -0.42 1.10 16 50 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -31.78 396.86 -11.17 -42.96 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -6.93 Total: 12.11 kcal Atomic # 6 Polarization: -3.26 SS G_CDS: -4.68 Total: -7.94 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -0.20 Total: -49.00 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.32 Total: -19.72 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.78 -11.17 -42.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000374021014.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.840 kcal (2) G-P(sol) polarization free energy of solvation -31.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds