Wall clock time and date at job start Wed Apr 1 2020 03:49:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99901 * 2 1 4 4 H 1.48500 * 109.47113 * 269.99893 * 3 2 1 5 5 H 1.48497 * 109.47415 * 30.00213 * 3 2 1 6 6 H 1.48500 * 109.47119 * 149.99942 * 3 2 1 7 7 C 1.37870 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00471 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00236 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.47286 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47006 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00125 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99834 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99826 * 180.02562 * 13 11 10 15 15 H 1.08998 * 109.49694 * 35.05883 * 14 13 11 16 16 C 1.53034 * 109.49920 * 155.16290 * 14 13 11 17 17 C 1.53346 * 109.61010 * 181.32179 * 16 14 13 18 18 C 1.53195 * 109.14901 * 298.71225 * 17 16 14 19 19 N 1.46919 * 108.89273 * 54.57640 * 18 17 16 20 20 C 1.34778 * 120.63255 * 126.34238 * 19 18 17 21 21 O 1.21281 * 119.99981 * 179.97438 * 20 19 18 22 22 C 1.50699 * 119.99892 * 0.02562 * 20 19 18 23 23 C 1.50706 * 109.47266 * 180.02562 * 22 20 19 24 24 C 1.38234 * 119.99586 * 269.72911 * 23 22 20 25 25 C 1.38240 * 119.99369 * 179.76625 * 24 23 22 26 26 C 1.38227 * 120.00258 * 0.50207 * 25 24 23 27 27 C 1.38242 * 119.99780 * 359.74856 * 26 25 24 28 28 C 1.38231 * 120.00442 * 359.97438 * 27 26 25 29 29 C 1.46933 * 118.74003 * 306.32349 * 19 18 17 30 30 H 0.97005 * 119.99766 * 359.97438 * 1 2 3 31 31 H 1.08993 * 109.46829 * 59.99817 * 9 7 2 32 32 H 1.09002 * 109.46532 * 299.99974 * 9 7 2 33 33 H 1.08994 * 109.47336 * 59.99489 * 10 9 7 34 34 H 1.09005 * 109.46657 * 299.99671 * 10 9 7 35 35 H 0.96993 * 119.99746 * 0.02562 * 13 11 10 36 36 H 1.08999 * 109.45836 * 301.33601 * 16 14 13 37 37 H 1.09001 * 109.45754 * 61.30485 * 16 14 13 38 38 H 1.08997 * 109.68637 * 178.74435 * 17 16 14 39 39 H 1.09002 * 109.47277 * 58.54691 * 17 16 14 40 40 H 1.09002 * 109.58720 * 294.71670 * 18 17 16 41 41 H 1.08996 * 109.58651 * 174.43567 * 18 17 16 42 42 H 1.09004 * 109.46826 * 299.99643 * 22 20 19 43 43 H 1.08995 * 109.47623 * 59.99620 * 22 20 19 44 44 H 1.07996 * 119.99980 * 359.97438 * 24 23 22 45 45 H 1.07997 * 119.99674 * 180.22563 * 25 24 23 46 46 H 1.07996 * 120.00300 * 179.72252 * 26 25 24 47 47 H 1.08001 * 119.99823 * 179.97438 * 27 26 25 48 48 H 1.07997 * 120.00276 * 179.97438 * 28 27 26 49 49 H 1.08994 * 109.58580 * 173.39910 * 29 19 18 50 50 H 1.09002 * 109.58042 * 293.81990 * 29 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0010 11 6 5.5285 -2.6366 0.0009 12 8 6.1349 -1.5863 0.0005 13 7 6.2024 -3.8038 0.0014 14 6 7.6674 -3.8038 0.0019 15 1 8.0310 -2.9627 0.5921 16 6 8.1780 -5.1129 0.6082 17 6 9.7111 -5.1017 0.6403 18 6 10.2429 -4.9892 -0.7920 19 7 9.6425 -3.8104 -1.4312 20 6 10.4191 -2.8684 -2.0021 21 8 9.9113 -1.9002 -2.5270 22 6 11.9185 -3.0189 -1.9894 23 6 12.5477 -1.8402 -2.6865 24 6 12.7911 -1.8908 -4.0463 25 6 13.3638 -0.8077 -4.6866 26 6 13.7025 0.3218 -3.9654 27 6 13.4638 0.3703 -2.6046 28 6 12.8859 -0.7104 -1.9652 29 6 8.1791 -3.6781 -1.4366 30 1 -0.4850 0.8401 0.0004 31 1 3.8745 -0.6801 0.8911 32 1 3.8752 -0.6804 -0.8889 33 1 3.6585 -3.1502 -0.8891 34 1 3.6578 -3.1505 0.8908 35 1 5.7173 -4.6438 0.0013 36 1 7.7950 -5.2165 1.6234 37 1 7.8343 -5.9517 0.0030 38 1 10.0756 -6.0241 1.0923 39 1 10.0561 -4.2485 1.2245 40 1 9.9753 -5.8849 -1.3526 41 1 11.3273 -4.8812 -0.7717 42 1 12.2706 -3.0612 -0.9586 43 1 12.1960 -3.9376 -2.5061 44 1 12.5308 -2.7751 -4.6089 45 1 13.5506 -0.8458 -5.7496 46 1 14.1540 1.1662 -4.4648 47 1 13.7288 1.2527 -2.0410 48 1 12.6998 -0.6727 -0.9021 49 1 7.9018 -2.7041 -1.8394 50 1 7.7433 -4.4670 -2.0497 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488362566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:49:17 Heat of formation + Delta-G solvation = -59.321534 kcal Electronic energy + Delta-G solvation = -29474.348907 eV Core-core repulsion = 25465.667142 eV Total energy + Delta-G solvation = -4008.681765 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.73576 -39.61024 -38.92259 -37.45470 -34.66215 -33.45422 -33.17484 -32.51383 -31.37490 -31.10430 -30.07642 -28.02106 -26.07376 -25.46868 -23.42158 -22.81317 -22.13358 -21.35203 -20.80397 -19.70682 -19.13950 -17.54787 -17.19548 -17.07420 -16.23217 -16.17285 -15.91756 -15.70538 -15.27729 -15.14340 -14.73749 -14.58514 -14.27621 -14.04143 -13.66573 -13.57549 -13.39955 -13.37196 -13.27931 -12.93011 -12.71081 -12.53222 -12.49744 -12.30189 -11.85941 -11.55936 -11.39248 -11.36644 -11.29325 -11.23694 -10.93338 -10.86930 -10.13522 -10.05354 -10.01849 -9.75584 -9.32783 -9.19144 -9.13290 -9.11001 -8.94062 -8.67465 -8.47917 -6.00731 -3.99362 1.09791 1.21171 2.42803 2.64012 3.12581 3.41378 3.43366 3.47871 3.58337 3.59451 4.25643 4.32008 4.44655 4.45447 4.54003 4.54176 4.54970 4.77606 4.79269 4.88022 4.92979 4.96726 5.02545 5.08116 5.14201 5.27964 5.34508 5.35052 5.39366 5.41470 5.46913 5.61239 5.64342 5.75121 5.81322 5.91784 5.98442 6.08885 6.11416 6.15778 6.23392 6.30055 6.34030 6.63278 6.71360 6.77801 7.13345 7.39972 7.46330 7.74880 7.81995 7.99437 8.52107 8.66298 9.02166 9.62657 11.12022 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010593 B = 0.002414 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2642.628290 B =11597.751588 C =13691.762477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.001 3.999 10 C -0.121 4.121 11 C 0.509 3.491 12 O -0.533 6.533 13 N -0.737 5.737 14 C 0.133 3.867 15 H 0.089 0.911 16 C -0.127 4.127 17 C -0.132 4.132 18 C 0.104 3.896 19 N -0.613 5.613 20 C 0.513 3.487 21 O -0.519 6.519 22 C -0.100 4.100 23 C -0.068 4.068 24 C -0.106 4.106 25 C -0.120 4.120 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.104 4.104 29 C 0.101 3.899 30 H 0.263 0.737 31 H 0.023 0.977 32 H 0.019 0.981 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.400 0.600 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.122 0.878 48 H 0.120 0.880 49 H 0.100 0.900 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.288 -14.665 -2.861 34.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.161 4.161 11 C 0.298 3.702 12 O -0.408 6.408 13 N -0.391 5.391 14 C 0.027 3.973 15 H 0.107 0.893 16 C -0.166 4.166 17 C -0.171 4.171 18 C -0.019 4.019 19 N -0.349 5.349 20 C 0.301 3.699 21 O -0.394 6.394 22 C -0.139 4.139 23 C -0.069 4.069 24 C -0.124 4.124 25 C -0.138 4.138 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.122 4.122 29 C -0.022 4.022 30 H 0.073 0.927 31 H 0.042 0.958 32 H 0.038 0.962 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.234 0.766 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.138 0.862 49 H 0.118 0.882 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 31.283 -13.216 -3.150 34.106 hybrid contribution 0.001 0.342 0.027 0.343 sum 31.284 -12.874 -3.123 33.973 Atomic orbital electron populations 1.69915 1.06281 1.26950 1.51144 1.24966 0.94713 0.99237 0.94320 0.86803 0.80603 0.83371 0.78831 1.20193 1.21454 1.18532 1.21109 0.89271 0.94541 1.51302 0.90939 1.19375 0.96405 0.90228 0.97707 1.21666 0.87825 1.03305 1.03323 1.21617 0.91634 0.82836 0.74153 1.90689 1.70691 1.31375 1.48061 1.46157 1.05655 1.09439 1.77868 1.21131 0.81276 0.98917 0.96018 0.89313 1.21860 0.95663 0.97015 1.02018 1.21942 0.95462 1.03174 0.96481 1.21806 0.98414 0.88246 0.93467 1.48071 1.06725 1.22599 1.57462 1.20565 0.88925 0.82189 0.78242 1.90788 1.75161 1.29802 1.43635 1.20705 0.91973 0.98469 1.02785 1.19276 0.98625 0.94964 0.93990 1.20959 0.98792 0.98912 0.93711 1.21098 0.99286 0.93628 0.99770 1.21155 1.00264 0.98072 0.94387 1.21122 0.99330 0.98318 0.94901 1.20991 0.98304 0.93017 0.99907 1.22037 0.78692 1.04402 0.97107 0.92739 0.95847 0.96234 0.89587 0.89584 0.76616 0.90655 0.91062 0.89935 0.91039 0.90987 0.89528 0.87947 0.87991 0.86327 0.86087 0.86155 0.86023 0.86241 0.88197 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.39 13.96 55.43 0.77 -27.62 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 23.19 27.47 -169.99 -4.67 18.52 16 4 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 5 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 6 H -0.26 -6.90 6.54 56.52 0.37 -6.53 16 7 C -0.52 -15.23 9.66 -34.44 -0.33 -15.56 16 8 H 0.07 2.18 7.99 -52.49 -0.42 1.76 16 9 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 10 C -0.12 -2.36 5.64 -27.88 -0.16 -2.52 16 11 C 0.51 9.31 7.79 -10.99 -0.09 9.22 16 12 O -0.53 -12.19 15.65 5.56 0.09 -12.10 16 13 N -0.74 -9.45 5.08 -53.69 -0.27 -9.72 16 14 C 0.13 1.54 2.61 -67.81 -0.18 1.36 16 15 H 0.09 1.30 7.58 -51.93 -0.39 0.90 16 16 C -0.13 -0.91 5.36 -26.53 -0.14 -1.05 16 17 C -0.13 -0.71 6.11 -26.45 -0.16 -0.87 16 18 C 0.10 0.57 6.33 -3.71 -0.02 0.55 16 19 N -0.61 -6.13 2.97 -172.77 -0.51 -6.65 16 20 C 0.51 6.16 7.69 -10.99 -0.08 6.08 16 21 O -0.52 -9.05 15.45 5.56 0.09 -8.96 16 22 C -0.10 -0.78 4.18 -29.03 -0.12 -0.90 16 23 C -0.07 -0.69 4.37 -104.62 -0.46 -1.14 16 24 C -0.11 -1.03 9.70 -39.58 -0.38 -1.42 16 25 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 26 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 27 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 28 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 29 C 0.10 1.25 6.01 -3.71 -0.02 1.22 16 30 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 31 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 32 H 0.02 0.52 7.53 -51.93 -0.39 0.13 16 33 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 34 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 35 H 0.40 3.81 8.60 -40.82 -0.35 3.46 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.09 0.29 5.93 -51.93 -0.31 -0.02 16 42 H 0.10 0.57 7.64 -51.93 -0.40 0.17 16 43 H 0.10 0.52 7.88 -51.93 -0.41 0.11 16 44 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 45 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 46 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 48 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 49 H 0.10 1.70 7.00 -51.93 -0.36 1.34 16 50 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 406.47 15.07 6.13 6.13 Total: -1.00 -39.11 406.47 -10.37 -49.48 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -8.07 Total: 0.07 kcal Atomic # 6 Polarization: -5.23 SS G_CDS: -3.92 Total: -9.15 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.01 Total: -43.99 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.17 Total: -21.07 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.67 Total: 18.52 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -39.11 -10.37 -49.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488362566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.838 kcal (2) G-P(sol) polarization free energy of solvation -39.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds