Wall clock time and date at job start Wed Apr 1 2020 03:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00316 * 2 1 4 4 H 1.48503 * 109.46616 * 270.00073 * 3 2 1 5 5 H 1.48498 * 109.47133 * 29.99715 * 3 2 1 6 6 H 1.48494 * 109.47010 * 150.00098 * 3 2 1 7 7 C 1.37886 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99835 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47256 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00521 * 270.00202 * 10 9 7 12 12 C 1.53000 * 109.46914 * 269.99854 * 11 10 9 13 13 N 1.46907 * 109.47180 * 179.97438 * 12 11 10 14 14 C 1.47008 * 110.99825 * 293.63658 * 13 12 11 15 15 C 1.53103 * 109.25444 * 177.60540 * 14 13 12 16 16 O 1.43012 * 109.25829 * 56.85198 * 15 14 13 17 17 C 1.43020 * 113.73710 * 301.32428 * 16 15 14 18 18 C 1.47007 * 110.99939 * 169.99823 * 13 12 11 19 19 C 1.34784 * 119.99544 * 90.00072 * 10 9 7 20 20 O 1.21700 * 119.99560 * 180.02562 * 19 10 9 21 21 C 1.46424 * 120.00390 * 359.97438 * 19 10 9 22 22 C 1.34805 * 120.00164 * 187.03142 * 21 19 10 23 23 C 1.47206 * 120.00180 * 11.07653 * 22 21 19 24 24 C 1.39838 * 120.17118 * 225.87579 * 23 22 21 25 25 C 1.37894 * 119.82483 * 179.67298 * 24 23 22 26 26 C 1.38403 * 120.16889 * 0.62242 * 25 24 23 27 27 C 1.38400 * 120.34642 * 359.67256 * 26 25 24 28 28 C 1.37893 * 120.17082 * 359.97438 * 27 26 25 29 29 H 0.96993 * 119.99959 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47291 * 59.99590 * 9 7 2 31 31 H 1.09000 * 109.47413 * 300.00019 * 9 7 2 32 32 H 1.09005 * 109.47045 * 29.99090 * 11 10 9 33 33 H 1.08997 * 109.47764 * 149.99554 * 11 10 9 34 34 H 1.08997 * 109.47444 * 299.99395 * 12 11 10 35 35 H 1.09000 * 109.47189 * 60.00080 * 12 11 10 36 36 H 1.08999 * 109.50979 * 297.53640 * 14 13 12 37 37 H 1.08995 * 109.51001 * 57.67236 * 14 13 12 38 38 H 1.08996 * 109.50559 * 296.91112 * 15 14 13 39 39 H 1.09003 * 109.53803 * 176.80475 * 15 14 13 40 40 H 1.08997 * 109.50757 * 298.74262 * 17 16 15 41 41 H 1.08990 * 109.54254 * 178.62550 * 17 16 15 42 42 H 1.09001 * 109.50937 * 302.33009 * 18 13 12 43 43 H 1.08999 * 109.50954 * 62.41964 * 18 13 12 44 44 H 1.08003 * 119.99801 * 7.03125 * 21 19 10 45 45 H 1.08004 * 120.00001 * 190.80340 * 22 21 19 46 46 H 1.08000 * 120.08584 * 359.97410 * 24 23 22 47 47 H 1.08001 * 119.91367 * 180.31582 * 25 24 23 48 48 H 1.07998 * 119.82440 * 179.69790 * 26 25 24 49 49 H 1.08001 * 119.91163 * 180.02562 * 27 26 25 50 50 H 1.07994 * 120.08461 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2435 -3.2653 1.2714 12 6 5.6883 -3.0246 1.7134 13 7 5.9325 -3.7159 2.9865 14 6 5.1382 -3.1198 4.0704 15 6 5.3769 -3.9059 5.3624 16 8 6.7762 -3.9140 5.6579 17 6 7.5797 -4.4883 4.6236 18 6 7.3633 -3.7081 3.3241 19 6 4.2249 -3.2115 -1.1646 20 8 4.6301 -4.3590 -1.1637 21 6 3.9808 -2.5222 -2.4332 22 6 4.0687 -3.1990 -3.5958 23 6 4.1667 -4.6677 -3.5869 24 6 5.1098 -5.3140 -4.3921 25 6 5.2001 -6.6899 -4.3731 26 6 4.3516 -7.4316 -3.5696 27 6 3.4115 -6.7996 -2.7745 28 6 3.3138 -5.4241 -2.7770 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6801 0.8911 31 1 3.8752 -0.6806 -0.8888 32 1 3.5624 -2.8806 2.0306 33 1 4.0765 -4.3345 1.1418 34 1 6.3694 -3.4092 0.9544 35 1 5.8553 -1.9553 1.8432 36 1 5.4399 -2.0824 4.2147 37 1 4.0804 -3.1592 3.8106 38 1 5.0257 -4.9299 5.2354 39 1 4.8346 -3.4340 6.1817 40 1 7.2926 -5.5293 4.4751 41 1 8.6307 -4.4376 4.9078 42 1 7.9297 -4.1770 2.5195 43 1 7.7007 -2.6801 3.4557 44 1 3.7304 -1.4717 -2.4375 45 1 4.0627 -2.6638 -4.5339 46 1 5.7691 -4.7368 -5.0235 47 1 5.9314 -7.1902 -4.9906 48 1 4.4239 -8.5091 -3.5628 49 1 2.7533 -7.3852 -2.1499 50 1 2.5800 -4.9324 -2.1557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491352598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:57 Heat of formation + Delta-G solvation = -11.561071 kcal Electronic energy + Delta-G solvation = -30537.624410 eV Core-core repulsion = 26531.013694 eV Total energy + Delta-G solvation = -4006.610716 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.84350 -39.43251 -38.32588 -36.22252 -34.93115 -33.49758 -32.57510 -31.29789 -30.56944 -30.28254 -29.05234 -27.83250 -26.16038 -24.08997 -23.68557 -22.61947 -22.20328 -21.92170 -20.50619 -20.14151 -17.93663 -17.12891 -17.04250 -16.62057 -16.20524 -16.18035 -15.50642 -15.19706 -15.08458 -14.79413 -14.64952 -14.59961 -14.29408 -13.76790 -13.61810 -13.60137 -13.04585 -13.02192 -12.84611 -12.55129 -12.37947 -12.34264 -12.20198 -12.02884 -11.62074 -11.52021 -11.43403 -11.00727 -10.81992 -10.80603 -10.79599 -10.70489 -10.45100 -10.27775 -9.78753 -9.66913 -9.55534 -9.17292 -8.78113 -8.53161 -8.40755 -7.78876 -7.72481 -6.27120 -4.28966 1.16290 1.82949 2.23952 3.11289 3.19330 3.21341 3.49309 3.77716 3.88928 4.13353 4.20416 4.23178 4.80041 4.93811 4.96592 5.02890 5.06860 5.07611 5.16526 5.19994 5.23432 5.28922 5.40652 5.43746 5.48105 5.50001 5.57301 5.70394 5.75342 5.76866 5.78750 5.87726 5.90152 5.96225 6.15140 6.27038 6.34445 6.35721 6.36396 6.50146 6.58329 6.63811 6.82317 6.88767 6.93137 6.94796 7.00994 7.05437 7.30267 7.36656 7.38103 8.06492 8.35209 8.77923 8.90301 9.31833 10.85536 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.006129 B = 0.004533 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4567.636283 B = 6175.026066 C = 9821.880883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.077 3.923 3 Si 0.869 3.131 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.265 1.265 7 C -0.540 4.540 8 H 0.079 0.921 9 C 0.208 3.792 10 N -0.584 5.584 11 C 0.127 3.873 12 C 0.045 3.955 13 N -0.532 5.532 14 C 0.012 3.988 15 C 0.065 3.935 16 O -0.389 6.389 17 C 0.065 3.935 18 C 0.019 3.981 19 C 0.540 3.460 20 O -0.549 6.549 21 C -0.176 4.176 22 C -0.060 4.060 23 C -0.050 4.050 24 C -0.109 4.109 25 C -0.137 4.137 26 C -0.119 4.119 27 C -0.130 4.130 28 C -0.038 4.038 29 H 0.267 0.733 30 H 0.031 0.969 31 H 0.031 0.969 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.097 0.903 40 H 0.059 0.941 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.040 0.960 44 H 0.141 0.859 45 H 0.131 0.869 46 H 0.115 0.885 47 H 0.114 0.886 48 H 0.112 0.888 49 H 0.115 0.885 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.093 -7.904 0.218 14.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.127 4.127 3 Si 0.696 3.304 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.190 1.190 7 C -0.578 4.578 8 H 0.097 0.903 9 C 0.087 3.913 10 N -0.314 5.314 11 C 0.003 3.997 12 C -0.084 4.084 13 N -0.258 5.258 14 C -0.117 4.117 15 C -0.012 4.012 16 O -0.308 6.308 17 C -0.012 4.012 18 C -0.110 4.110 19 C 0.330 3.670 20 O -0.430 6.430 21 C -0.196 4.196 22 C -0.080 4.080 23 C -0.050 4.050 24 C -0.127 4.127 25 C -0.155 4.155 26 C -0.137 4.137 27 C -0.148 4.148 28 C -0.056 4.056 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.095 0.905 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.112 0.888 38 H 0.078 0.922 39 H 0.115 0.885 40 H 0.078 0.922 41 H 0.113 0.887 42 H 0.103 0.897 43 H 0.059 0.941 44 H 0.158 0.842 45 H 0.148 0.852 46 H 0.133 0.867 47 H 0.132 0.868 48 H 0.130 0.870 49 H 0.133 0.867 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 12.049 -8.759 0.382 14.901 hybrid contribution 0.366 2.053 -0.098 2.087 sum 12.415 -6.706 0.285 14.113 Atomic orbital electron populations 1.69885 1.06202 1.27220 1.49318 1.24871 0.94708 0.98802 0.94269 0.86961 0.80407 0.84100 0.78958 1.19783 1.20814 1.19018 1.21359 0.88918 0.95024 1.52483 0.90337 1.19853 0.95994 0.78087 0.97409 1.47833 1.63099 1.15813 1.04626 1.21177 0.93934 0.98804 0.85787 1.22509 0.99202 0.96186 0.90482 1.62123 1.06240 1.54775 1.02646 1.22892 1.00023 0.96953 0.91790 1.22682 0.81976 1.00248 0.96332 1.87958 1.17908 1.82583 1.42310 1.22640 0.95432 0.96644 0.86474 1.22759 0.89691 0.99886 0.98623 1.18395 0.78064 0.85835 0.84662 1.90818 1.47695 1.17082 1.87422 1.23298 1.02232 1.01910 0.92169 1.22264 0.95651 0.92487 0.97564 1.18884 0.96660 0.92587 0.96867 1.21099 0.98175 0.94419 0.99047 1.20846 1.00059 0.93965 1.00628 1.21063 0.96224 0.99165 0.97274 1.20917 0.99469 0.94607 0.99840 1.21136 0.97122 0.93445 0.93931 0.92315 0.95145 0.95113 0.90391 0.89758 0.90488 0.94705 0.93870 0.88780 0.92175 0.88451 0.92240 0.88703 0.89709 0.94148 0.84176 0.85167 0.86667 0.86844 0.86963 0.86704 0.86683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.30 13.96 55.43 0.77 -24.52 16 2 C 0.08 2.03 5.47 -17.81 -0.10 1.93 16 3 Si 0.87 19.30 27.47 -169.99 -4.67 14.63 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.27 -5.60 6.54 56.52 0.37 -5.23 16 7 C -0.54 -13.77 9.94 -34.44 -0.34 -14.11 16 8 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 9 C 0.21 4.43 3.98 -5.20 -0.02 4.41 16 10 N -0.58 -11.50 2.46 -176.71 -0.43 -11.93 16 11 C 0.13 2.25 5.34 -4.05 -0.02 2.22 16 12 C 0.04 0.70 5.28 -3.82 -0.02 0.68 16 13 N -0.53 -7.37 4.73 -234.31 -1.11 -8.48 16 14 C 0.01 0.15 5.44 -3.71 -0.02 0.13 16 15 C 0.06 0.74 7.01 37.21 0.26 1.00 16 16 O -0.39 -4.90 10.83 -35.23 -0.38 -5.28 16 17 C 0.07 0.70 7.01 37.21 0.26 0.96 16 18 C 0.02 0.22 5.64 -3.71 -0.02 0.20 16 19 C 0.54 10.62 6.73 -12.96 -0.09 10.53 16 20 O -0.55 -11.38 11.92 5.19 0.06 -11.32 16 21 C -0.18 -3.12 9.15 -37.51 -0.34 -3.47 16 22 C -0.06 -0.94 9.79 -37.16 -0.36 -1.30 16 23 C -0.05 -0.82 4.43 -105.06 -0.47 -1.28 16 24 C -0.11 -1.57 9.80 -39.11 -0.38 -1.96 16 25 C -0.14 -1.84 10.03 -39.65 -0.40 -2.24 16 26 C -0.12 -1.65 10.04 -39.46 -0.40 -2.04 16 27 C -0.13 -2.02 10.03 -39.65 -0.40 -2.42 16 28 C -0.04 -0.66 6.70 -39.11 -0.26 -0.92 16 29 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 30 H 0.03 0.65 7.13 -51.93 -0.37 0.28 16 31 H 0.03 0.63 5.45 -51.93 -0.28 0.35 16 32 H 0.08 1.39 6.45 -51.93 -0.33 1.06 16 33 H 0.08 1.58 7.42 -51.93 -0.39 1.20 16 34 H 0.08 1.26 8.04 -51.93 -0.42 0.84 16 35 H 0.03 0.55 8.12 -51.93 -0.42 0.13 16 36 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.09 1.23 6.38 -51.93 -0.33 0.90 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.08 0.94 8.09 -51.93 -0.42 0.52 16 43 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.14 2.46 6.15 -52.48 -0.32 2.14 16 45 H 0.13 1.61 8.06 -52.48 -0.42 1.19 16 46 H 0.12 1.39 8.06 -52.49 -0.42 0.96 16 47 H 0.11 1.22 8.06 -52.49 -0.42 0.79 16 48 H 0.11 1.26 8.06 -52.49 -0.42 0.83 16 49 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 50 H 0.12 2.19 7.27 -52.49 -0.38 1.80 16 LS Contribution 399.91 15.07 6.03 6.03 Total: -1.00 -30.12 399.91 -10.76 -40.88 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -7.91 Total: 7.68 kcal Atomic # 6 Polarization: -4.56 SS G_CDS: -3.12 Total: -7.68 kcal Atomic # 7 Polarization: -44.16 SS G_CDS: -0.77 Total: -44.93 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: -0.32 Total: -16.60 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.67 Total: 14.63 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -30.12 -10.76 -40.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491352598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.318 kcal (2) G-P(sol) polarization free energy of solvation -30.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds