Wall clock time and date at job start Wed Apr 1 2020 03:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00316 * 2 1 4 4 H 1.48503 * 109.46616 * 270.00073 * 3 2 1 5 5 H 1.48498 * 109.47133 * 29.99715 * 3 2 1 6 6 H 1.48494 * 109.47010 * 150.00098 * 3 2 1 7 7 C 1.37886 * 119.99680 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99853 * 359.97438 * 7 2 1 9 9 C 1.50694 * 119.99835 * 180.02562 * 7 2 1 10 10 N 1.46498 * 109.47256 * 179.97438 * 9 7 2 11 11 C 1.46494 * 120.00521 * 270.00202 * 10 9 7 12 12 C 1.53000 * 109.46914 * 269.99854 * 11 10 9 13 13 N 1.46907 * 109.47180 * 179.97438 * 12 11 10 14 14 C 1.47008 * 110.99825 * 293.63658 * 13 12 11 15 15 C 1.53103 * 109.25444 * 177.60540 * 14 13 12 16 16 O 1.43012 * 109.25829 * 56.85198 * 15 14 13 17 17 C 1.43020 * 113.73710 * 301.32428 * 16 15 14 18 18 C 1.47007 * 110.99939 * 169.99823 * 13 12 11 19 19 C 1.34784 * 119.99544 * 90.00072 * 10 9 7 20 20 O 1.21700 * 119.99560 * 180.02562 * 19 10 9 21 21 C 1.46424 * 120.00390 * 359.97438 * 19 10 9 22 22 C 1.34805 * 120.00164 * 187.03142 * 21 19 10 23 23 C 1.47206 * 120.00180 * 11.07653 * 22 21 19 24 24 C 1.39838 * 120.17118 * 225.87579 * 23 22 21 25 25 C 1.37894 * 119.82483 * 179.67298 * 24 23 22 26 26 C 1.38403 * 120.16889 * 0.62242 * 25 24 23 27 27 C 1.38400 * 120.34642 * 359.67256 * 26 25 24 28 28 C 1.37893 * 120.17082 * 359.97438 * 27 26 25 29 29 H 0.96993 * 119.99959 * 0.02562 * 1 2 3 30 30 H 1.08997 * 109.47291 * 59.99590 * 9 7 2 31 31 H 1.09000 * 109.47413 * 300.00019 * 9 7 2 32 32 H 1.09005 * 109.47045 * 29.99090 * 11 10 9 33 33 H 1.08997 * 109.47764 * 149.99554 * 11 10 9 34 34 H 1.08997 * 109.47444 * 299.99395 * 12 11 10 35 35 H 1.09000 * 109.47189 * 60.00080 * 12 11 10 36 36 H 1.08999 * 109.50979 * 297.53640 * 14 13 12 37 37 H 1.08995 * 109.51001 * 57.67236 * 14 13 12 38 38 H 1.08996 * 109.50559 * 296.91112 * 15 14 13 39 39 H 1.09003 * 109.53803 * 176.80475 * 15 14 13 40 40 H 1.08997 * 109.50757 * 298.74262 * 17 16 15 41 41 H 1.08990 * 109.54254 * 178.62550 * 17 16 15 42 42 H 1.09001 * 109.50937 * 302.33009 * 18 13 12 43 43 H 1.08999 * 109.50954 * 62.41964 * 18 13 12 44 44 H 1.08003 * 119.99801 * 7.03125 * 21 19 10 45 45 H 1.08004 * 120.00001 * 190.80340 * 22 21 19 46 46 H 1.08000 * 120.08584 * 359.97410 * 24 23 22 47 47 H 1.08001 * 119.91367 * 180.31582 * 25 24 23 48 48 H 1.07998 * 119.82440 * 179.69790 * 26 25 24 49 49 H 1.08001 * 119.91163 * 180.02562 * 27 26 25 50 50 H 1.07994 * 120.08461 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0462 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 4.2435 -3.2653 1.2714 12 6 5.6883 -3.0246 1.7134 13 7 5.9325 -3.7159 2.9865 14 6 5.1382 -3.1198 4.0704 15 6 5.3769 -3.9059 5.3624 16 8 6.7762 -3.9140 5.6579 17 6 7.5797 -4.4883 4.6236 18 6 7.3633 -3.7081 3.3241 19 6 4.2249 -3.2115 -1.1646 20 8 4.6301 -4.3590 -1.1637 21 6 3.9808 -2.5222 -2.4332 22 6 4.0687 -3.1990 -3.5958 23 6 4.1667 -4.6677 -3.5869 24 6 5.1098 -5.3140 -4.3921 25 6 5.2001 -6.6899 -4.3731 26 6 4.3516 -7.4316 -3.5696 27 6 3.4115 -6.7996 -2.7745 28 6 3.3138 -5.4241 -2.7770 29 1 -0.4850 0.8400 -0.0004 30 1 3.8745 -0.6801 0.8911 31 1 3.8752 -0.6806 -0.8888 32 1 3.5624 -2.8806 2.0306 33 1 4.0765 -4.3345 1.1418 34 1 6.3694 -3.4092 0.9544 35 1 5.8553 -1.9553 1.8432 36 1 5.4399 -2.0824 4.2147 37 1 4.0804 -3.1592 3.8106 38 1 5.0257 -4.9299 5.2354 39 1 4.8346 -3.4340 6.1817 40 1 7.2926 -5.5293 4.4751 41 1 8.6307 -4.4376 4.9078 42 1 7.9297 -4.1770 2.5195 43 1 7.7007 -2.6801 3.4557 44 1 3.7304 -1.4717 -2.4375 45 1 4.0627 -2.6638 -4.5339 46 1 5.7691 -4.7368 -5.0235 47 1 5.9314 -7.1902 -4.9906 48 1 4.4239 -8.5091 -3.5628 49 1 2.7533 -7.3852 -2.1499 50 1 2.5800 -4.9324 -2.1557 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491352598.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:56 Heat of formation + Delta-G solvation = -29.611491 kcal Electronic energy + Delta-G solvation = -30538.407135 eV Core-core repulsion = 26531.013694 eV Total energy + Delta-G solvation = -4007.393441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.20441 -40.50757 -39.57251 -37.46043 -36.38729 -34.84013 -34.46465 -32.26171 -31.74671 -31.59550 -30.37616 -29.46775 -27.37708 -25.06554 -25.01102 -24.39542 -23.40031 -23.11913 -21.64737 -21.33527 -19.41097 -19.05203 -18.47942 -17.84646 -17.38849 -17.18747 -16.81267 -16.31108 -16.30102 -16.02231 -15.94383 -15.82654 -15.69487 -15.07378 -14.94414 -14.83489 -14.58761 -14.27193 -14.19725 -14.05148 -13.78777 -13.61676 -13.43917 -13.19348 -13.10172 -12.89408 -12.50323 -12.44717 -12.34133 -12.12598 -11.99393 -11.94082 -11.85884 -11.71922 -11.48648 -10.91909 -10.77403 -10.72551 -10.60496 -9.75959 -9.52978 -9.30410 -9.01749 -8.31308 -6.38842 -0.11156 0.65363 1.00451 1.37709 1.39467 1.48581 2.14512 2.32173 2.42747 2.82617 2.96786 3.02543 3.04806 3.70847 3.83327 3.85912 3.94159 3.96071 4.06542 4.12122 4.16312 4.18654 4.29009 4.31797 4.34981 4.41545 4.49167 4.55998 4.63828 4.67459 4.69576 4.73715 4.77009 4.78300 4.82920 4.87598 4.95294 4.98923 5.10076 5.16971 5.29122 5.33872 5.42239 5.63960 5.67048 5.70089 5.80167 5.88228 5.89594 6.13677 6.17458 6.22026 6.60348 6.68938 7.24028 7.38552 8.85237 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.006129 B = 0.004533 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4567.636283 B = 6175.026066 C = 9821.880883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.021 3.979 3 Si 0.940 3.060 4 H -0.258 1.258 5 H -0.286 1.286 6 H -0.243 1.243 7 C -0.538 4.538 8 H 0.027 0.973 9 C 0.219 3.781 10 N -0.592 5.592 11 C 0.132 3.868 12 C 0.063 3.937 13 N -0.541 5.541 14 C 0.011 3.989 15 C 0.068 3.932 16 O -0.402 6.402 17 C 0.065 3.935 18 C 0.018 3.982 19 C 0.535 3.465 20 O -0.564 6.564 21 C -0.212 4.212 22 C -0.032 4.032 23 C -0.076 4.076 24 C -0.108 4.108 25 C -0.135 4.135 26 C -0.118 4.118 27 C -0.146 4.146 28 C -0.063 4.063 29 H 0.268 0.732 30 H 0.039 0.961 31 H 0.050 0.950 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.034 0.966 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.115 0.885 40 H 0.061 0.939 41 H 0.121 0.879 42 H 0.093 0.907 43 H 0.039 0.961 44 H 0.141 0.859 45 H 0.168 0.832 46 H 0.144 0.856 47 H 0.150 0.850 48 H 0.142 0.858 49 H 0.120 0.880 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.219 -7.868 -0.858 17.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.182 1.182 5 H -0.212 1.212 6 H -0.166 1.166 7 C -0.576 4.576 8 H 0.045 0.955 9 C 0.097 3.903 10 N -0.322 5.322 11 C 0.008 3.992 12 C -0.066 4.066 13 N -0.267 5.267 14 C -0.117 4.117 15 C -0.009 4.009 16 O -0.320 6.320 17 C -0.011 4.011 18 C -0.110 4.110 19 C 0.327 3.673 20 O -0.447 6.447 21 C -0.233 4.233 22 C -0.052 4.052 23 C -0.076 4.076 24 C -0.126 4.126 25 C -0.153 4.153 26 C -0.136 4.136 27 C -0.164 4.164 28 C -0.082 4.082 29 H 0.077 0.923 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.052 0.948 36 H 0.056 0.944 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.111 0.889 43 H 0.057 0.943 44 H 0.159 0.841 45 H 0.186 0.814 46 H 0.162 0.838 47 H 0.167 0.833 48 H 0.160 0.840 49 H 0.138 0.862 50 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 15.201 -8.748 -0.688 17.552 hybrid contribution -0.658 1.809 0.169 1.932 sum 14.544 -6.938 -0.519 16.122 Atomic orbital electron populations 1.70054 1.08399 1.28370 1.51308 1.25771 0.95414 1.02962 0.93660 0.85834 0.79618 0.78466 0.79862 1.18226 1.21153 1.16597 1.21471 0.91183 0.93085 1.51863 0.95497 1.19645 0.92962 0.79320 0.98370 1.47866 1.63439 1.15462 1.05442 1.21133 0.95536 0.97470 0.85066 1.22214 0.97007 0.96123 0.91262 1.62120 1.07821 1.54558 1.02192 1.22911 0.99423 0.96995 0.92335 1.22730 0.81960 1.00275 0.95956 1.87944 1.18300 1.82790 1.43014 1.22787 0.96603 0.96306 0.85428 1.22850 0.88238 1.00193 0.99678 1.18771 0.77525 0.85739 0.85231 1.90794 1.48530 1.17633 1.87712 1.23240 1.05883 1.02103 0.92047 1.22710 0.91686 0.92473 0.98280 1.19095 0.97680 0.92990 0.97837 1.21468 0.97493 0.95302 0.98355 1.21321 1.00030 0.93764 1.00152 1.21445 0.95098 1.00850 0.96158 1.21120 1.00528 0.94050 1.00721 1.21015 0.97769 0.94556 0.94859 0.92256 0.94288 0.93264 0.91154 0.91486 0.91238 0.94819 0.94352 0.89643 0.91946 0.86693 0.92022 0.86159 0.88903 0.94278 0.84140 0.81449 0.83813 0.83268 0.83981 0.86184 0.90135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.71 13.96 21.45 0.30 -55.41 16 2 C 0.02 1.12 5.47 84.66 0.46 1.59 16 3 Si 0.94 39.48 27.47 68.60 1.88 41.36 16 4 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 5 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.24 -9.24 6.54 99.48 0.65 -8.59 16 7 C -0.54 -28.62 9.94 25.60 0.25 -28.36 16 8 H 0.03 1.67 8.06 -2.91 -0.02 1.64 16 9 C 0.22 9.42 3.98 85.63 0.34 9.76 16 10 N -0.59 -24.19 2.46 -831.20 -2.04 -26.23 16 11 C 0.13 4.88 5.34 86.38 0.46 5.35 16 12 C 0.06 1.97 5.28 86.30 0.46 2.43 16 13 N -0.54 -14.89 4.73 -895.22 -4.23 -19.12 16 14 C 0.01 0.30 5.44 86.32 0.47 0.76 16 15 C 0.07 1.48 7.01 72.02 0.50 1.99 16 16 O -0.40 -9.49 10.83 -148.98 -1.61 -11.10 16 17 C 0.07 1.28 7.01 72.02 0.50 1.79 16 18 C 0.02 0.41 5.64 86.32 0.49 0.90 16 19 C 0.54 21.81 6.73 86.37 0.58 22.40 16 20 O -0.56 -24.24 11.92 -4.35 -0.05 -24.29 16 21 C -0.21 -7.63 9.15 23.61 0.22 -7.42 16 22 C -0.03 -0.98 9.79 23.84 0.23 -0.74 16 23 C -0.08 -2.44 4.43 -20.15 -0.09 -2.53 16 24 C -0.11 -2.83 9.80 22.58 0.22 -2.60 16 25 C -0.13 -3.18 10.03 22.23 0.22 -2.96 16 26 C -0.12 -3.00 10.04 22.35 0.22 -2.77 16 27 C -0.15 -4.57 10.03 22.23 0.22 -4.34 16 28 C -0.06 -2.30 6.70 22.57 0.15 -2.14 16 29 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 30 H 0.04 1.62 7.13 -2.39 -0.02 1.61 16 31 H 0.05 1.97 5.45 -2.39 -0.01 1.96 16 32 H 0.07 2.67 6.45 -2.38 -0.02 2.65 16 33 H 0.07 2.69 7.42 -2.39 -0.02 2.67 16 34 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 35 H 0.03 1.06 8.12 -2.39 -0.02 1.04 16 36 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.09 2.32 6.38 -2.39 -0.02 2.30 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 43 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.14 4.94 6.15 -2.91 -0.02 4.92 16 45 H 0.17 3.69 8.06 -2.91 -0.02 3.67 16 46 H 0.14 2.87 8.06 -2.91 -0.02 2.85 16 47 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 48 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 49 H 0.12 3.44 8.06 -2.91 -0.02 3.42 16 50 H 0.08 3.37 7.27 -2.91 -0.02 3.35 16 Total: -1.00 -68.68 399.91 1.03 -67.65 By element: Atomic # 1 Polarization: 33.21 SS G_CDS: 0.86 Total: 34.07 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 5.93 Total: -6.92 kcal Atomic # 7 Polarization: -94.80 SS G_CDS: -5.97 Total: -100.77 kcal Atomic # 8 Polarization: -33.73 SS G_CDS: -1.66 Total: -35.39 kcal Atomic # 14 Polarization: 39.48 SS G_CDS: 1.88 Total: 41.36 kcal Total: -68.68 1.03 -67.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491352598.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.036 kcal (2) G-P(sol) polarization free energy of solvation -68.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds