Wall clock time and date at job start Wed Apr 1 2020 03:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48496 * 109.47301 * 269.99631 * 3 2 1 5 5 H 1.48504 * 109.47180 * 29.99967 * 3 2 1 6 6 H 1.48505 * 109.47226 * 149.99679 * 3 2 1 7 7 C 1.38716 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00088 * 180.02562 * 7 2 1 9 9 O 1.34780 * 120.00303 * 0.02562 * 7 2 1 10 10 C 1.35568 * 117.00233 * 185.06207 * 9 7 2 11 11 C 1.39172 * 119.90061 * 354.35803 * 10 9 7 12 12 C 1.37603 * 120.10469 * 179.97438 * 11 10 9 13 13 C 1.40020 * 119.89291 * 0.02562 * 12 11 10 14 14 C 1.46963 * 120.09678 * 179.97438 * 13 12 11 15 15 C 1.35026 * 120.00105 * 136.67995 * 14 13 12 16 16 C 1.46256 * 119.99666 * 348.68620 * 15 14 13 17 17 O 1.21714 * 120.00403 * 353.21240 * 16 15 14 18 18 N 1.34782 * 119.99881 * 173.21278 * 16 15 14 19 19 C 1.46496 * 119.99912 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.46893 * 180.02562 * 19 18 16 21 21 C 1.53003 * 109.46946 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.50420 * 54.92189 * 21 20 19 23 23 C 1.53121 * 109.50047 * 174.99863 * 21 20 19 24 24 C 1.53123 * 109.15679 * 177.63204 * 23 21 20 25 25 C 1.53035 * 109.28066 * 302.34478 * 24 23 21 26 26 N 1.46848 * 109.52206 * 59.18095 * 25 24 23 27 27 C 1.46846 * 111.19741 * 298.26140 * 26 25 24 28 28 C 1.40021 * 119.80419 * 0.24912 * 13 12 11 29 29 C 1.37603 * 119.89467 * 359.46810 * 28 13 12 30 30 H 0.96995 * 119.99888 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.94792 * 0.02562 * 11 10 9 32 32 H 1.07995 * 120.05377 * 179.97438 * 12 11 10 33 33 H 1.08000 * 120.00304 * 316.67822 * 14 13 12 34 34 H 1.08000 * 120.00051 * 168.67996 * 15 14 13 35 35 H 0.97000 * 119.99770 * 359.97438 * 18 16 15 36 36 H 1.09003 * 109.47020 * 60.00516 * 19 18 16 37 37 H 1.08994 * 109.47535 * 300.00105 * 19 18 16 38 38 H 1.08994 * 109.47400 * 60.00186 * 20 19 18 39 39 H 1.09005 * 109.47229 * 299.99874 * 20 19 18 40 40 H 1.08999 * 109.52324 * 57.73430 * 23 21 20 41 41 H 1.08994 * 109.57861 * 297.56675 * 23 21 20 42 42 H 1.08999 * 109.50160 * 62.29439 * 24 23 21 43 43 H 1.09005 * 109.50309 * 182.40360 * 24 23 21 44 44 H 1.09001 * 109.45971 * 179.19213 * 25 24 23 45 45 H 1.08999 * 109.46201 * 299.16610 * 25 24 23 46 46 H 1.00904 * 110.99956 * 62.35009 * 26 25 24 47 47 H 1.09004 * 109.45999 * 301.72165 * 27 26 25 48 48 H 1.09000 * 109.45029 * 181.75612 * 27 26 25 49 49 H 1.08007 * 120.05598 * 179.74909 * 28 13 12 50 50 H 1.08003 * 119.95007 * 180.29441 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0086 -1.2013 0.0005 8 1 3.0887 -1.2014 0.0010 9 8 1.3348 -2.3686 0.0005 10 6 2.0690 -3.5032 0.1077 11 6 3.4589 -3.4341 0.0927 12 6 4.2083 -4.5830 0.2016 13 6 3.5702 -5.8230 0.3272 14 6 4.3662 -7.0530 0.4433 15 6 4.0214 -7.9978 1.3443 16 6 3.0192 -7.7014 2.3674 17 8 2.5866 -6.5699 2.4859 18 7 2.5747 -8.6812 3.1792 19 6 1.5713 -8.3842 4.2044 20 6 1.2435 -9.6605 4.9820 21 6 0.1951 -9.3504 6.0523 22 1 -0.6755 -8.8889 5.5861 23 6 -0.2252 -10.6484 6.7474 24 6 -1.2298 -10.3223 7.8560 25 6 -0.5951 -9.3359 8.8389 26 7 -0.2112 -8.1110 8.1258 27 6 0.7884 -8.3922 7.0875 28 6 2.1716 -5.8883 0.3360 29 6 1.4305 -4.7336 0.2324 30 1 -0.4850 0.8400 -0.0004 31 1 3.9502 -2.4771 -0.0038 32 1 5.2868 -4.5285 0.1895 33 1 5.2269 -7.2013 -0.1920 34 1 4.4856 -8.9723 1.3093 35 1 2.9192 -9.5830 3.0845 36 1 0.6665 -8.0059 3.7284 37 1 1.9631 -7.6323 4.8893 38 1 2.1483 -10.0384 5.4580 39 1 0.8518 -10.4127 4.2973 40 1 0.6515 -11.1301 7.1805 41 1 -0.6876 -11.3179 6.0222 42 1 -2.1227 -9.8762 7.4182 43 1 -1.5004 -11.2376 8.3826 44 1 -1.3129 -9.0906 9.6217 45 1 0.2899 -9.7880 9.2866 46 1 -1.0200 -7.6521 7.7341 47 1 1.6670 -8.8487 7.5434 48 1 1.0754 -7.4613 6.5984 49 1 1.6752 -6.8431 0.4286 50 1 0.3516 -4.7824 0.2439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493044299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:06 Heat of formation + Delta-G solvation = -26.630937 kcal Electronic energy + Delta-G solvation = -29005.494180 eV Core-core repulsion = 24998.229985 eV Total energy + Delta-G solvation = -4007.264195 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.87069 -39.34337 -38.64399 -36.59813 -35.38050 -33.08037 -32.97778 -32.10421 -31.82314 -30.09556 -28.86965 -27.64069 -25.44140 -24.43656 -23.98648 -22.65415 -21.75559 -21.40767 -20.95539 -20.52068 -19.12670 -17.90671 -17.15180 -16.65562 -16.37910 -16.06123 -15.65185 -15.08611 -14.95249 -14.65242 -14.50564 -14.29579 -14.12100 -13.81421 -13.60498 -13.51505 -13.34416 -13.08054 -12.94258 -12.63302 -12.57002 -12.38865 -12.15714 -11.91377 -11.76386 -11.67517 -11.62814 -11.35796 -11.22849 -11.02077 -10.97356 -10.66450 -10.63981 -10.59352 -10.39367 -9.47411 -9.39193 -9.13644 -8.92854 -8.67737 -8.65406 -7.89802 -6.84031 -6.43798 -3.99467 1.26926 2.44730 2.72688 3.15069 3.16705 3.20974 3.33624 3.67264 3.97068 3.99023 4.27677 4.37413 4.49374 4.62183 4.71908 4.84302 4.92593 5.02362 5.07087 5.11416 5.15626 5.22846 5.23979 5.26412 5.37783 5.38283 5.51578 5.53626 5.59540 5.61465 5.68031 5.72895 5.75981 5.81369 5.87033 5.93091 6.00078 6.27240 6.35350 6.45633 6.55534 6.62313 6.69561 6.81299 7.04958 7.05928 7.14659 7.38602 7.47423 7.52656 7.69848 7.94614 8.03045 8.57827 9.01935 9.74051 10.74131 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010641 B = 0.002181 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.808453 B =12835.412762 C =14819.402410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.389 4.389 8 H 0.094 0.906 9 O -0.173 6.173 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.041 4.041 13 C -0.190 4.190 14 C 0.027 3.973 15 C -0.268 4.268 16 C 0.537 3.463 17 O -0.511 6.511 18 N -0.738 5.738 19 C 0.119 3.881 20 C -0.121 4.121 21 C -0.122 4.122 22 H 0.074 0.926 23 C -0.113 4.113 24 C -0.159 4.159 25 C 0.055 3.945 26 N -0.687 5.687 27 C 0.058 3.942 28 C 0.013 3.987 29 C -0.203 4.203 30 H 0.270 0.730 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.394 0.606 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.343 0.657 47 H 0.072 0.928 48 H 0.082 0.918 49 H 0.100 0.900 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.307 -23.178 11.247 25.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.111 0.889 9 O -0.075 6.075 10 C 0.117 3.883 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.191 4.191 14 C 0.008 3.992 15 C -0.289 4.289 16 C 0.327 3.673 17 O -0.387 6.387 18 N -0.392 5.392 19 C -0.005 4.005 20 C -0.159 4.159 21 C -0.142 4.142 22 H 0.092 0.908 23 C -0.151 4.151 24 C -0.198 4.198 25 C -0.075 4.075 26 N -0.314 5.314 27 C -0.072 4.072 28 C -0.006 4.006 29 C -0.222 4.222 30 H 0.080 0.920 31 H 0.144 0.856 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.227 0.773 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.090 0.910 46 H 0.160 0.840 47 H 0.091 0.909 48 H 0.100 0.900 49 H 0.118 0.882 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.002 -21.890 11.826 25.061 hybrid contribution 0.113 -0.307 -0.650 0.727 sum 3.114 -22.197 11.176 25.046 Atomic orbital electron populations 1.70022 1.06025 1.27736 1.45685 1.25325 0.95847 0.98909 0.96513 0.85698 0.78982 0.79984 0.78698 1.19855 1.20226 1.19128 1.21394 0.91916 0.80792 1.52455 0.88894 1.83904 1.34764 1.11649 1.77207 1.19523 0.90264 0.87730 0.90830 1.20952 0.93659 0.98790 1.13604 1.20741 0.97880 0.91566 0.95793 1.18290 0.93014 0.92258 1.15498 1.22335 0.93855 0.91362 0.91698 1.22600 1.05260 1.00946 1.00083 1.18504 0.81941 0.84854 0.82026 1.91001 1.57108 1.20486 1.70070 1.45987 1.44324 1.12251 1.36589 1.21325 0.92150 0.96981 0.90010 1.21757 0.99271 0.97531 0.97390 1.21838 0.98839 0.97240 0.96326 0.90753 1.21596 0.99078 0.96863 0.97551 1.22279 0.98871 1.00747 0.97942 1.22037 1.00025 0.89439 0.95959 1.60639 1.16800 1.24082 1.29906 1.22198 0.95178 0.98974 0.90861 1.20432 0.92106 0.96166 0.91882 1.20003 0.99279 0.90256 1.12683 0.91972 0.85650 0.87613 0.86110 0.86225 0.77263 0.91678 0.91411 0.91288 0.91361 0.91828 0.91917 0.91912 0.91479 0.90808 0.91025 0.83968 0.90920 0.90008 0.88158 0.86881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.70 13.67 55.48 0.76 -24.94 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.93 29.55 -169.99 -5.02 15.90 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.39 -11.20 9.48 30.91 0.29 -10.91 16 8 H 0.09 2.48 5.18 -52.48 -0.27 2.21 16 9 O -0.17 -5.13 9.74 0.75 0.01 -5.13 16 10 C 0.17 4.42 6.66 -38.88 -0.26 4.16 16 11 C -0.25 -5.80 9.14 -39.47 -0.36 -6.16 16 12 C -0.04 -0.82 9.78 -39.15 -0.38 -1.20 16 13 C -0.19 -3.55 4.54 -105.03 -0.48 -4.03 16 14 C 0.03 0.38 9.80 -37.19 -0.36 0.02 16 15 C -0.27 -3.39 9.90 -37.50 -0.37 -3.76 16 16 C 0.54 7.94 6.77 -13.04 -0.09 7.86 16 17 O -0.51 -10.07 12.18 5.18 0.06 -10.00 16 18 N -0.74 -7.95 5.55 -61.76 -0.34 -8.30 16 19 C 0.12 1.23 5.43 -4.04 -0.02 1.21 16 20 C -0.12 -0.85 4.80 -26.73 -0.13 -0.97 16 21 C -0.12 -0.86 2.33 -90.54 -0.21 -1.07 16 22 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 23 C -0.11 -0.70 5.29 -26.61 -0.14 -0.84 16 24 C -0.16 -0.95 6.08 -26.65 -0.16 -1.12 16 25 C 0.06 0.37 6.55 -3.83 -0.03 0.35 16 26 N -0.69 -5.71 6.87 -113.82 -0.78 -6.49 16 27 C 0.06 0.47 5.58 -3.84 -0.02 0.45 16 28 C 0.01 0.26 6.60 -39.15 -0.26 0.00 16 29 C -0.20 -4.73 9.97 -39.46 -0.39 -5.12 16 30 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.13 2.86 5.62 -52.49 -0.29 2.57 16 32 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 35 H 0.39 2.97 8.45 -40.82 -0.34 2.63 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.80 6.59 -51.93 -0.34 0.46 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.34 2.68 8.86 -39.29 -0.35 2.34 16 47 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.08 0.77 6.62 -51.93 -0.34 0.43 16 49 H 0.10 1.86 7.02 -52.48 -0.37 1.49 16 50 H 0.11 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 401.53 15.07 6.05 6.05 Total: -1.00 -34.13 401.53 -10.53 -44.66 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -7.79 Total: 8.39 kcal Atomic # 6 Polarization: -16.68 SS G_CDS: -3.47 Total: -20.15 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: -0.37 Total: -39.73 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: 0.07 Total: -15.13 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.13 -10.53 -44.66 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493044299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.026 kcal (2) G-P(sol) polarization free energy of solvation -34.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds