Wall clock time and date at job start Wed Apr 1 2020 03:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86798 * 120.00078 * 2 1 4 4 H 1.48496 * 109.47301 * 269.99631 * 3 2 1 5 5 H 1.48504 * 109.47180 * 29.99967 * 3 2 1 6 6 H 1.48505 * 109.47226 * 149.99679 * 3 2 1 7 7 C 1.38716 * 119.99898 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00088 * 180.02562 * 7 2 1 9 9 O 1.34780 * 120.00303 * 0.02562 * 7 2 1 10 10 C 1.35568 * 117.00233 * 185.06207 * 9 7 2 11 11 C 1.39172 * 119.90061 * 354.35803 * 10 9 7 12 12 C 1.37603 * 120.10469 * 179.97438 * 11 10 9 13 13 C 1.40020 * 119.89291 * 0.02562 * 12 11 10 14 14 C 1.46963 * 120.09678 * 179.97438 * 13 12 11 15 15 C 1.35026 * 120.00105 * 136.67995 * 14 13 12 16 16 C 1.46256 * 119.99666 * 348.68620 * 15 14 13 17 17 O 1.21714 * 120.00403 * 353.21240 * 16 15 14 18 18 N 1.34782 * 119.99881 * 173.21278 * 16 15 14 19 19 C 1.46496 * 119.99912 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.46893 * 180.02562 * 19 18 16 21 21 C 1.53003 * 109.46946 * 180.02562 * 20 19 18 22 22 H 1.09004 * 109.50420 * 54.92189 * 21 20 19 23 23 C 1.53121 * 109.50047 * 174.99863 * 21 20 19 24 24 C 1.53123 * 109.15679 * 177.63204 * 23 21 20 25 25 C 1.53035 * 109.28066 * 302.34478 * 24 23 21 26 26 N 1.46848 * 109.52206 * 59.18095 * 25 24 23 27 27 C 1.46846 * 111.19741 * 298.26140 * 26 25 24 28 28 C 1.40021 * 119.80419 * 0.24912 * 13 12 11 29 29 C 1.37603 * 119.89467 * 359.46810 * 28 13 12 30 30 H 0.96995 * 119.99888 * 0.02562 * 1 2 3 31 31 H 1.07999 * 119.94792 * 0.02562 * 11 10 9 32 32 H 1.07995 * 120.05377 * 179.97438 * 12 11 10 33 33 H 1.08000 * 120.00304 * 316.67822 * 14 13 12 34 34 H 1.08000 * 120.00051 * 168.67996 * 15 14 13 35 35 H 0.97000 * 119.99770 * 359.97438 * 18 16 15 36 36 H 1.09003 * 109.47020 * 60.00516 * 19 18 16 37 37 H 1.08994 * 109.47535 * 300.00105 * 19 18 16 38 38 H 1.08994 * 109.47400 * 60.00186 * 20 19 18 39 39 H 1.09005 * 109.47229 * 299.99874 * 20 19 18 40 40 H 1.08999 * 109.52324 * 57.73430 * 23 21 20 41 41 H 1.08994 * 109.57861 * 297.56675 * 23 21 20 42 42 H 1.08999 * 109.50160 * 62.29439 * 24 23 21 43 43 H 1.09005 * 109.50309 * 182.40360 * 24 23 21 44 44 H 1.09001 * 109.45971 * 179.19213 * 25 24 23 45 45 H 1.08999 * 109.46201 * 299.16610 * 25 24 23 46 46 H 1.00904 * 110.99956 * 62.35009 * 26 25 24 47 47 H 1.09004 * 109.45999 * 301.72165 * 27 26 25 48 48 H 1.09000 * 109.45029 * 181.75612 * 27 26 25 49 49 H 1.08007 * 120.05598 * 179.74909 * 28 13 12 50 50 H 1.08003 * 119.95007 * 180.29441 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0086 -1.2013 0.0005 8 1 3.0887 -1.2014 0.0010 9 8 1.3348 -2.3686 0.0005 10 6 2.0690 -3.5032 0.1077 11 6 3.4589 -3.4341 0.0927 12 6 4.2083 -4.5830 0.2016 13 6 3.5702 -5.8230 0.3272 14 6 4.3662 -7.0530 0.4433 15 6 4.0214 -7.9978 1.3443 16 6 3.0192 -7.7014 2.3674 17 8 2.5866 -6.5699 2.4859 18 7 2.5747 -8.6812 3.1792 19 6 1.5713 -8.3842 4.2044 20 6 1.2435 -9.6605 4.9820 21 6 0.1951 -9.3504 6.0523 22 1 -0.6755 -8.8889 5.5861 23 6 -0.2252 -10.6484 6.7474 24 6 -1.2298 -10.3223 7.8560 25 6 -0.5951 -9.3359 8.8389 26 7 -0.2112 -8.1110 8.1258 27 6 0.7884 -8.3922 7.0875 28 6 2.1716 -5.8883 0.3360 29 6 1.4305 -4.7336 0.2324 30 1 -0.4850 0.8400 -0.0004 31 1 3.9502 -2.4771 -0.0038 32 1 5.2868 -4.5285 0.1895 33 1 5.2269 -7.2013 -0.1920 34 1 4.4856 -8.9723 1.3093 35 1 2.9192 -9.5830 3.0845 36 1 0.6665 -8.0059 3.7284 37 1 1.9631 -7.6323 4.8893 38 1 2.1483 -10.0384 5.4580 39 1 0.8518 -10.4127 4.2973 40 1 0.6515 -11.1301 7.1805 41 1 -0.6876 -11.3179 6.0222 42 1 -2.1227 -9.8762 7.4182 43 1 -1.5004 -11.2376 8.3826 44 1 -1.3129 -9.0906 9.6217 45 1 0.2899 -9.7880 9.2866 46 1 -1.0200 -7.6521 7.7341 47 1 1.6670 -8.8487 7.5434 48 1 1.0754 -7.4613 6.5984 49 1 1.6752 -6.8431 0.4286 50 1 0.3516 -4.7824 0.2439 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493044299.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:05 Heat of formation + Delta-G solvation = -51.008663 kcal Electronic energy + Delta-G solvation = -29006.551278 eV Core-core repulsion = 24998.229985 eV Total energy + Delta-G solvation = -4008.321292 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.11846 -40.46377 -39.94819 -38.23580 -36.40571 -34.58917 -34.01637 -33.74398 -32.42020 -31.82334 -30.04362 -28.84524 -27.40991 -25.36412 -24.64431 -23.87295 -23.43066 -22.36244 -22.08775 -21.18956 -20.39176 -19.74262 -18.85661 -18.03973 -17.17359 -16.88616 -16.57148 -16.36844 -16.30925 -15.89779 -15.73824 -15.61932 -15.51962 -15.12984 -14.78241 -14.63110 -14.52338 -14.36512 -14.11663 -14.05388 -13.71541 -13.56280 -13.25021 -13.11363 -12.99303 -12.64280 -12.63954 -12.42253 -12.33788 -12.22482 -12.18411 -12.12397 -11.85674 -11.55844 -11.28346 -11.24294 -10.94710 -10.65220 -10.38611 -10.00695 -9.56443 -9.27462 -8.55489 -8.48633 -6.16045 0.00184 0.71245 1.13036 1.33072 1.45230 1.51848 2.16893 2.38489 2.50487 2.86832 3.20432 3.36168 3.52289 3.66908 3.77622 3.91881 4.01601 4.07063 4.08012 4.15244 4.16989 4.24659 4.32118 4.35594 4.48586 4.54352 4.60212 4.62021 4.66958 4.73422 4.76983 4.93421 4.94591 4.99884 5.05228 5.09580 5.09806 5.13736 5.19143 5.23642 5.26427 5.27574 5.41839 5.46966 5.57127 5.68005 5.72391 5.85290 6.02179 6.09122 6.25033 6.40907 6.74983 6.95073 7.48216 7.77294 8.74522 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010641 B = 0.002181 C = 0.001889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2630.808453 B =12835.412762 C =14819.402410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.022 2.978 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.415 4.415 8 H 0.103 0.897 9 O -0.231 6.231 10 C 0.126 3.874 11 C -0.259 4.259 12 C -0.048 4.048 13 C -0.160 4.160 14 C 0.003 3.997 15 C -0.230 4.230 16 C 0.522 3.478 17 O -0.570 6.570 18 N -0.716 5.716 19 C 0.120 3.880 20 C -0.106 4.106 21 C -0.117 4.117 22 H 0.061 0.939 23 C -0.109 4.109 24 C -0.156 4.156 25 C 0.055 3.945 26 N -0.702 5.702 27 C 0.060 3.940 28 C 0.015 3.985 29 C -0.222 4.222 30 H 0.273 0.727 31 H 0.120 0.880 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.416 0.584 36 H 0.041 0.959 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.342 0.658 47 H 0.076 0.924 48 H 0.061 0.939 49 H 0.118 0.882 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.744 -27.320 11.851 30.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.841 3.159 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.491 4.491 8 H 0.120 0.880 9 O -0.137 6.137 10 C 0.076 3.924 11 C -0.279 4.279 12 C -0.066 4.066 13 C -0.161 4.161 14 C -0.016 4.016 15 C -0.250 4.250 16 C 0.312 3.688 17 O -0.451 6.451 18 N -0.369 5.369 19 C -0.004 4.004 20 C -0.145 4.145 21 C -0.138 4.138 22 H 0.079 0.921 23 C -0.147 4.147 24 C -0.195 4.195 25 C -0.074 4.074 26 N -0.330 5.330 27 C -0.070 4.070 28 C -0.004 4.004 29 C -0.242 4.242 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.166 0.834 33 H 0.187 0.813 34 H 0.193 0.807 35 H 0.253 0.747 36 H 0.060 0.940 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.102 0.898 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.091 0.909 46 H 0.159 0.841 47 H 0.094 0.906 48 H 0.079 0.921 49 H 0.136 0.864 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 6.478 -26.162 12.445 29.687 hybrid contribution -0.847 0.433 -0.661 1.158 sum 5.631 -25.729 11.784 28.854 Atomic orbital electron populations 1.70177 1.08156 1.28890 1.48709 1.26688 0.96912 1.02894 0.95738 0.84547 0.77725 0.74216 0.79431 1.18395 1.19476 1.17713 1.21888 0.92611 0.81388 1.53227 0.88021 1.83873 1.36299 1.12741 1.80837 1.20006 0.91741 0.87533 0.93158 1.21098 0.92787 1.00162 1.13817 1.21191 0.99840 0.90610 0.94951 1.18890 0.92766 0.94311 1.10136 1.22584 0.95389 0.89236 0.94413 1.23086 1.02284 1.02326 0.97324 1.19171 0.82183 0.84569 0.82850 1.91010 1.59307 1.23074 1.71698 1.45837 1.43179 1.12661 1.35224 1.21309 0.90943 0.98516 0.89676 1.21663 0.99944 0.95763 0.97100 1.21766 0.98348 0.97602 0.96057 0.92056 1.21571 0.99427 0.96062 0.97597 1.22240 0.98539 1.00950 0.97770 1.22074 1.00269 0.88985 0.96104 1.60647 1.16961 1.25238 1.30142 1.22124 0.95414 0.98332 0.91112 1.20660 0.93223 0.95530 0.90959 1.20183 0.99200 0.91026 1.13751 0.91759 0.86213 0.83379 0.81316 0.80693 0.74697 0.94016 0.93201 0.89594 0.89849 0.91028 0.91197 0.92471 0.90223 0.90365 0.90877 0.84069 0.90602 0.92087 0.86384 0.88200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.02 13.67 21.62 0.30 -58.72 16 2 C -0.03 -1.49 5.49 84.86 0.47 -1.02 16 3 Si 1.02 44.71 29.55 68.60 2.03 46.74 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 5 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 6 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.42 -25.62 9.48 67.93 0.64 -24.98 16 8 H 0.10 5.77 5.18 -2.91 -0.02 5.75 16 9 O -0.23 -15.01 9.74 -20.23 -0.20 -15.21 16 10 C 0.13 7.00 6.66 22.72 0.15 7.15 16 11 C -0.26 -12.42 9.14 22.34 0.20 -12.22 16 12 C -0.05 -1.82 9.78 22.55 0.22 -1.60 16 13 C -0.16 -5.63 4.54 -20.13 -0.09 -5.72 16 14 C 0.00 0.07 9.80 23.82 0.23 0.30 16 15 C -0.23 -4.42 9.90 23.62 0.23 -4.19 16 16 C 0.52 13.78 6.77 86.33 0.58 14.36 16 17 O -0.57 -22.09 12.18 -4.39 -0.05 -22.14 16 18 N -0.72 -13.03 5.55 -467.50 -2.60 -15.62 16 19 C 0.12 2.35 5.43 86.38 0.47 2.82 16 20 C -0.11 -1.21 4.80 30.60 0.15 -1.07 16 21 C -0.12 -1.51 2.33 -10.74 -0.03 -1.54 16 22 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 23 C -0.11 -1.09 5.29 30.68 0.16 -0.93 16 24 C -0.16 -1.60 6.08 30.65 0.19 -1.42 16 25 C 0.06 0.68 6.55 86.32 0.57 1.25 16 26 N -0.70 -11.62 6.87 -514.02 -3.53 -15.15 16 27 C 0.06 0.96 5.58 86.32 0.48 1.44 16 28 C 0.01 0.59 6.60 22.55 0.15 0.74 16 29 C -0.22 -11.05 9.97 22.35 0.22 -10.83 16 30 H 0.27 15.95 8.31 -92.71 -0.77 15.18 16 31 H 0.12 5.73 5.62 -2.91 -0.02 5.71 16 32 H 0.15 4.31 8.06 -2.91 -0.02 4.29 16 33 H 0.17 2.41 8.06 -2.91 -0.02 2.39 16 34 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 35 H 0.42 4.09 8.45 -92.71 -0.78 3.31 16 36 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.05 1.19 6.59 -2.39 -0.02 1.17 16 38 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 40 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 44 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 45 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 46 H 0.34 5.57 8.86 -89.69 -0.79 4.77 16 47 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.06 1.21 6.62 -2.39 -0.02 1.20 16 49 H 0.12 4.27 7.02 -2.91 -0.02 4.25 16 50 H 0.10 5.02 8.06 -2.91 -0.02 5.00 16 Total: -1.00 -84.71 401.53 0.33 -84.38 By element: Atomic # 1 Polarization: 33.79 SS G_CDS: -0.62 Total: 33.17 kcal Atomic # 6 Polarization: -42.45 SS G_CDS: 5.01 Total: -37.44 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -5.83 Total: -89.49 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.25 Total: -37.35 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -84.71 0.33 -84.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493044299.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.369 kcal (2) G-P(sol) polarization free energy of solvation -84.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds