Wall clock time and date at job start Wed Apr 1 2020 03:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99973 * 2 1 4 4 H 1.48497 * 109.47171 * 239.99834 * 3 2 1 5 5 H 1.48494 * 109.47441 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46605 * 120.00388 * 3 2 1 7 7 C 1.38721 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99776 * 179.97438 * 7 2 1 9 9 O 1.34777 * 120.00332 * 0.02562 * 7 2 1 10 10 C 1.35564 * 117.00028 * 185.06279 * 9 7 2 11 11 C 1.39171 * 119.90082 * 354.36018 * 10 9 7 12 12 C 1.37606 * 120.10522 * 180.02562 * 11 10 9 13 13 C 1.40022 * 119.89370 * 359.97438 * 12 11 10 14 14 C 1.46968 * 120.09839 * 179.97438 * 13 12 11 15 15 C 1.35017 * 119.99651 * 136.67942 * 14 13 12 16 16 C 1.46253 * 120.00701 * 348.68507 * 15 14 13 17 17 O 1.21730 * 119.99519 * 353.21153 * 16 15 14 18 18 N 1.34775 * 120.00586 * 173.21599 * 16 15 14 19 19 C 1.46498 * 120.00181 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47185 * 179.97438 * 19 18 16 21 21 C 1.52996 * 109.47337 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.50304 * 304.92085 * 21 20 19 23 23 C 1.53113 * 109.50351 * 184.80172 * 21 20 19 24 24 C 1.53118 * 109.16227 * 182.40374 * 23 21 20 25 25 C 1.53037 * 109.27870 * 57.65353 * 24 23 21 26 26 N 1.46847 * 109.52329 * 300.82326 * 25 24 23 27 27 C 1.46846 * 111.19860 * 61.74008 * 26 25 24 28 28 C 1.40024 * 119.80035 * 0.25016 * 13 12 11 29 29 C 1.37594 * 119.89676 * 359.47621 * 28 13 12 30 30 H 0.97001 * 119.99771 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.95278 * 0.02562 * 11 10 9 32 32 H 1.07996 * 120.04980 * 179.97438 * 12 11 10 33 33 H 1.07995 * 119.99756 * 316.68093 * 14 13 12 34 34 H 1.08005 * 119.99426 * 168.68404 * 15 14 13 35 35 H 0.97002 * 119.99412 * 359.97438 * 18 16 15 36 36 H 1.08999 * 109.47179 * 59.99892 * 19 18 16 37 37 H 1.09003 * 109.47098 * 299.99424 * 19 18 16 38 38 H 1.09003 * 109.46815 * 299.99821 * 20 19 18 39 39 H 1.08999 * 109.47059 * 59.99437 * 20 19 18 40 40 H 1.08996 * 109.52682 * 302.31030 * 23 21 20 41 41 H 1.09002 * 109.52718 * 62.49824 * 23 21 20 42 42 H 1.08997 * 109.50563 * 297.71764 * 24 23 21 43 43 H 1.08998 * 109.54046 * 177.61406 * 24 23 21 44 44 H 1.08996 * 109.46413 * 180.80793 * 25 24 23 45 45 H 1.09002 * 109.45182 * 60.82980 * 25 24 23 46 46 H 1.00901 * 111.00167 * 185.83576 * 26 25 24 47 47 H 1.09000 * 109.46260 * 178.23991 * 27 26 25 48 48 H 1.09004 * 109.46571 * 58.27470 * 27 26 25 49 49 H 1.08001 * 120.04995 * 179.74170 * 28 13 12 50 50 H 1.08004 * 119.95257 * 180.29513 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0086 -1.2014 -0.0005 8 1 3.0886 -1.2014 -0.0010 9 8 1.3347 -2.3686 -0.0016 10 6 2.0689 -3.5033 0.1045 11 6 3.4588 -3.4342 0.0897 12 6 4.2082 -4.5833 0.1966 13 6 3.5701 -5.8235 0.3210 14 6 4.3661 -7.0537 0.4349 15 6 4.0218 -7.9995 1.3349 16 6 3.0205 -7.7045 2.3592 17 8 2.5881 -6.5730 2.4795 18 7 2.5765 -8.6853 3.1700 19 6 1.5731 -8.3898 4.1957 20 6 1.2451 -9.6672 4.9713 21 6 0.1976 -9.3585 6.0429 22 1 0.5537 -8.5463 6.6765 23 6 -0.0432 -10.6064 6.8968 24 6 -1.1353 -10.3070 7.9274 25 6 -2.4082 -9.8661 7.2012 26 7 -2.1258 -8.6690 6.3990 27 6 -1.1139 -8.9450 5.3712 28 6 2.1714 -5.8886 0.3307 29 6 1.4304 -4.7337 0.2290 30 1 -0.4850 0.8401 0.0004 31 1 3.9502 -2.4771 -0.0059 32 1 5.2867 -4.5287 0.1845 33 1 5.2263 -7.2011 -0.2012 34 1 4.4860 -8.9740 1.2983 35 1 2.9210 -9.5870 3.0739 36 1 0.6682 -8.0113 3.7203 37 1 1.9648 -7.6384 4.8814 38 1 0.8532 -10.4182 4.2853 39 1 2.1499 -10.0461 5.4466 40 1 -0.3616 -11.4295 6.2573 41 1 0.8783 -10.8791 7.4113 42 1 -0.8006 -9.5100 8.5913 43 1 -1.3416 -11.2042 8.5110 44 1 -3.1834 -9.6384 7.9328 45 1 -2.7499 -10.6688 6.5478 46 1 -2.9704 -8.3031 5.9856 47 1 -0.9491 -8.0484 4.7737 48 1 -1.4618 -9.7521 4.7264 49 1 1.6751 -6.8434 0.4223 50 1 0.3515 -4.7825 0.2412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493044300.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:10 Heat of formation + Delta-G solvation = -24.682189 kcal Electronic energy + Delta-G solvation = -29031.577007 eV Core-core repulsion = 25024.397317 eV Total energy + Delta-G solvation = -4007.179691 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -39.80378 -39.16701 -38.61434 -36.58069 -35.35122 -33.12974 -32.99331 -32.11528 -31.89800 -30.08709 -28.83260 -27.62135 -25.43201 -24.45300 -24.04883 -22.63480 -21.74321 -21.36745 -20.88997 -19.97635 -19.11858 -17.89874 -17.16601 -16.88954 -16.51946 -15.80190 -15.68828 -14.86511 -14.76651 -14.69554 -14.51426 -14.21358 -14.17029 -13.86122 -13.58792 -13.44715 -13.31976 -13.25573 -13.09534 -12.88342 -12.52144 -12.43226 -12.13998 -11.93806 -11.67923 -11.66104 -11.33515 -11.28697 -10.98856 -10.96233 -10.71663 -10.65970 -10.61317 -10.49476 -10.39226 -9.46065 -9.37399 -9.13139 -8.90453 -8.75372 -8.66222 -7.88808 -6.83082 -6.42948 -3.98674 1.28090 2.45656 2.73790 3.15471 3.18445 3.19697 3.36252 3.68835 3.89013 3.99708 4.34614 4.48641 4.53883 4.72714 4.73503 4.91599 4.98711 5.08015 5.12644 5.13848 5.19226 5.25804 5.28884 5.32594 5.37868 5.38784 5.55748 5.57252 5.60856 5.64281 5.74356 5.76460 5.79468 5.87898 5.89843 5.98706 6.11987 6.28048 6.36428 6.46776 6.57833 6.63254 6.72760 6.82180 7.06648 7.06824 7.15139 7.39398 7.48308 7.53462 7.71911 7.95498 8.03734 8.59692 9.02623 9.74820 10.74894 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.002217 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.494279 B =12628.474727 C =14713.675496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.039 3.961 3 Si 0.942 3.058 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.390 4.390 8 H 0.093 0.907 9 O -0.173 6.173 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.190 4.190 14 C 0.027 3.973 15 C -0.267 4.267 16 C 0.537 3.463 17 O -0.511 6.511 18 N -0.738 5.738 19 C 0.119 3.881 20 C -0.124 4.124 21 C -0.082 4.082 22 H 0.083 0.917 23 C -0.115 4.115 24 C -0.119 4.119 25 C 0.056 3.944 26 N -0.691 5.691 27 C 0.058 3.942 28 C 0.013 3.987 29 C -0.203 4.203 30 H 0.271 0.729 31 H 0.126 0.874 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.394 0.606 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.072 0.928 45 H 0.027 0.973 46 H 0.345 0.655 47 H 0.081 0.919 48 H 0.030 0.970 49 H 0.100 0.900 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.298 -23.556 10.372 25.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.194 1.194 7 C -0.466 4.466 8 H 0.110 0.890 9 O -0.075 6.075 10 C 0.116 3.884 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.190 4.190 14 C 0.007 3.993 15 C -0.289 4.289 16 C 0.326 3.674 17 O -0.387 6.387 18 N -0.391 5.391 19 C -0.004 4.004 20 C -0.163 4.163 21 C -0.101 4.101 22 H 0.101 0.899 23 C -0.153 4.153 24 C -0.157 4.157 25 C -0.073 4.073 26 N -0.322 5.322 27 C -0.071 4.071 28 C -0.006 4.006 29 C -0.222 4.222 30 H 0.081 0.919 31 H 0.143 0.857 32 H 0.124 0.876 33 H 0.139 0.861 34 H 0.138 0.862 35 H 0.227 0.773 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.046 0.954 46 H 0.163 0.837 47 H 0.100 0.900 48 H 0.048 0.952 49 H 0.118 0.882 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.959 -22.223 10.899 24.829 hybrid contribution 0.182 -0.305 -0.545 0.650 sum 2.141 -22.528 10.354 24.885 Atomic orbital electron populations 1.70015 1.06021 1.27839 1.45606 1.25323 0.95844 0.98896 0.96504 0.85769 0.78709 0.79674 0.79223 1.19464 1.20267 1.19446 1.21344 0.91885 0.80811 1.52567 0.88954 1.83902 1.34746 1.11630 1.77216 1.19523 0.90265 0.87735 0.90838 1.20950 0.93662 0.98776 1.13634 1.20742 0.97872 0.91570 0.95814 1.18292 0.93019 0.92247 1.15487 1.22330 0.93859 0.91377 0.91729 1.22601 1.05266 1.00924 1.00063 1.18504 0.81947 0.84866 0.82050 1.91006 1.57095 1.20495 1.70081 1.45997 1.44365 1.12203 1.36586 1.21330 0.92066 0.96956 0.90082 1.21815 0.99260 0.97508 0.97687 1.21112 0.94249 0.98411 0.96341 0.89876 1.21618 0.98908 0.97238 0.97514 1.21587 0.95029 1.01099 0.97940 1.21926 0.97545 0.91176 0.96658 1.60218 1.14404 1.30964 1.26649 1.22071 0.91969 1.00433 0.92623 1.20428 0.92106 0.96164 0.91876 1.20000 0.99278 0.90249 1.12675 0.91922 0.85665 0.87625 0.86124 0.86235 0.77281 0.91453 0.91590 0.91462 0.91115 0.92301 0.91714 0.91043 0.91701 0.90913 0.95440 0.83666 0.90043 0.95217 0.88153 0.86880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.75 13.67 55.48 0.76 -24.99 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 20.96 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 7 C -0.39 -11.24 9.48 30.91 0.29 -10.94 16 8 H 0.09 2.46 5.18 -52.48 -0.27 2.19 16 9 O -0.17 -5.13 9.74 0.77 0.01 -5.13 16 10 C 0.17 4.42 6.66 -38.88 -0.26 4.16 16 11 C -0.25 -5.82 9.14 -39.47 -0.36 -6.18 16 12 C -0.04 -0.82 9.78 -39.14 -0.38 -1.21 16 13 C -0.19 -3.56 4.54 -105.02 -0.48 -4.04 16 14 C 0.03 0.38 9.80 -37.19 -0.36 0.02 16 15 C -0.27 -3.40 9.90 -37.51 -0.37 -3.77 16 16 C 0.54 8.01 6.77 -13.04 -0.09 7.92 16 17 O -0.51 -10.15 12.18 5.16 0.06 -10.08 16 18 N -0.74 -8.08 5.55 -61.75 -0.34 -8.42 16 19 C 0.12 1.28 5.43 -4.04 -0.02 1.26 16 20 C -0.12 -0.92 4.80 -26.73 -0.13 -1.04 16 21 C -0.08 -0.65 2.35 -90.54 -0.21 -0.87 16 22 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 23 C -0.12 -0.78 5.29 -26.61 -0.14 -0.92 16 24 C -0.12 -0.82 6.09 -26.65 -0.16 -0.98 16 25 C 0.06 0.41 6.55 -3.83 -0.03 0.39 16 26 N -0.69 -6.04 6.85 -113.82 -0.78 -6.82 16 27 C 0.06 0.51 5.57 -3.83 -0.02 0.49 16 28 C 0.01 0.26 6.60 -39.15 -0.26 0.00 16 29 C -0.20 -4.73 9.97 -39.47 -0.39 -5.12 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 31 H 0.13 2.86 5.62 -52.48 -0.29 2.57 16 32 H 0.11 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 35 H 0.39 3.02 8.45 -40.82 -0.34 2.67 16 36 H 0.07 0.82 6.59 -51.93 -0.34 0.48 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 46 H 0.35 2.67 8.90 -39.29 -0.35 2.32 16 47 H 0.08 0.81 6.61 -51.93 -0.34 0.47 16 48 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.10 1.86 7.02 -52.49 -0.37 1.49 16 50 H 0.11 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -34.40 401.55 -10.53 -44.93 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: -7.79 Total: 8.37 kcal Atomic # 6 Polarization: -16.37 SS G_CDS: -3.47 Total: -19.84 kcal Atomic # 7 Polarization: -39.87 SS G_CDS: -0.36 Total: -40.24 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: 0.07 Total: -15.21 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.40 -10.53 -44.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493044300.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.250 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds