Wall clock time and date at job start Wed Apr 1 2020 03:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86801 * 119.99973 * 2 1 4 4 H 1.48497 * 109.47171 * 239.99834 * 3 2 1 5 5 H 1.48494 * 109.47441 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46605 * 120.00388 * 3 2 1 7 7 C 1.38721 * 119.99625 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99776 * 179.97438 * 7 2 1 9 9 O 1.34777 * 120.00332 * 0.02562 * 7 2 1 10 10 C 1.35564 * 117.00028 * 185.06279 * 9 7 2 11 11 C 1.39171 * 119.90082 * 354.36018 * 10 9 7 12 12 C 1.37606 * 120.10522 * 180.02562 * 11 10 9 13 13 C 1.40022 * 119.89370 * 359.97438 * 12 11 10 14 14 C 1.46968 * 120.09839 * 179.97438 * 13 12 11 15 15 C 1.35017 * 119.99651 * 136.67942 * 14 13 12 16 16 C 1.46253 * 120.00701 * 348.68507 * 15 14 13 17 17 O 1.21730 * 119.99519 * 353.21153 * 16 15 14 18 18 N 1.34775 * 120.00586 * 173.21599 * 16 15 14 19 19 C 1.46498 * 120.00181 * 180.02562 * 18 16 15 20 20 C 1.53003 * 109.47185 * 179.97438 * 19 18 16 21 21 C 1.52996 * 109.47337 * 179.97438 * 20 19 18 22 22 H 1.08997 * 109.50304 * 304.92085 * 21 20 19 23 23 C 1.53113 * 109.50351 * 184.80172 * 21 20 19 24 24 C 1.53118 * 109.16227 * 182.40374 * 23 21 20 25 25 C 1.53037 * 109.27870 * 57.65353 * 24 23 21 26 26 N 1.46847 * 109.52329 * 300.82326 * 25 24 23 27 27 C 1.46846 * 111.19860 * 61.74008 * 26 25 24 28 28 C 1.40024 * 119.80035 * 0.25016 * 13 12 11 29 29 C 1.37594 * 119.89676 * 359.47621 * 28 13 12 30 30 H 0.97001 * 119.99771 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.95278 * 0.02562 * 11 10 9 32 32 H 1.07996 * 120.04980 * 179.97438 * 12 11 10 33 33 H 1.07995 * 119.99756 * 316.68093 * 14 13 12 34 34 H 1.08005 * 119.99426 * 168.68404 * 15 14 13 35 35 H 0.97002 * 119.99412 * 359.97438 * 18 16 15 36 36 H 1.08999 * 109.47179 * 59.99892 * 19 18 16 37 37 H 1.09003 * 109.47098 * 299.99424 * 19 18 16 38 38 H 1.09003 * 109.46815 * 299.99821 * 20 19 18 39 39 H 1.08999 * 109.47059 * 59.99437 * 20 19 18 40 40 H 1.08996 * 109.52682 * 302.31030 * 23 21 20 41 41 H 1.09002 * 109.52718 * 62.49824 * 23 21 20 42 42 H 1.08997 * 109.50563 * 297.71764 * 24 23 21 43 43 H 1.08998 * 109.54046 * 177.61406 * 24 23 21 44 44 H 1.08996 * 109.46413 * 180.80793 * 25 24 23 45 45 H 1.09002 * 109.45182 * 60.82980 * 25 24 23 46 46 H 1.00901 * 111.00167 * 185.83576 * 26 25 24 47 47 H 1.09000 * 109.46260 * 178.23991 * 27 26 25 48 48 H 1.09004 * 109.46571 * 58.27470 * 27 26 25 49 49 H 1.08001 * 120.04995 * 179.74170 * 28 13 12 50 50 H 1.08004 * 119.95257 * 180.29513 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0086 -1.2014 -0.0005 8 1 3.0886 -1.2014 -0.0010 9 8 1.3347 -2.3686 -0.0016 10 6 2.0689 -3.5033 0.1045 11 6 3.4588 -3.4342 0.0897 12 6 4.2082 -4.5833 0.1966 13 6 3.5701 -5.8235 0.3210 14 6 4.3661 -7.0537 0.4349 15 6 4.0218 -7.9995 1.3349 16 6 3.0205 -7.7045 2.3592 17 8 2.5881 -6.5730 2.4795 18 7 2.5765 -8.6853 3.1700 19 6 1.5731 -8.3898 4.1957 20 6 1.2451 -9.6672 4.9713 21 6 0.1976 -9.3585 6.0429 22 1 0.5537 -8.5463 6.6765 23 6 -0.0432 -10.6064 6.8968 24 6 -1.1353 -10.3070 7.9274 25 6 -2.4082 -9.8661 7.2012 26 7 -2.1258 -8.6690 6.3990 27 6 -1.1139 -8.9450 5.3712 28 6 2.1714 -5.8886 0.3307 29 6 1.4304 -4.7337 0.2290 30 1 -0.4850 0.8401 0.0004 31 1 3.9502 -2.4771 -0.0059 32 1 5.2867 -4.5287 0.1845 33 1 5.2263 -7.2011 -0.2012 34 1 4.4860 -8.9740 1.2983 35 1 2.9210 -9.5870 3.0739 36 1 0.6682 -8.0113 3.7203 37 1 1.9648 -7.6384 4.8814 38 1 0.8532 -10.4182 4.2853 39 1 2.1499 -10.0461 5.4466 40 1 -0.3616 -11.4295 6.2573 41 1 0.8783 -10.8791 7.4113 42 1 -0.8006 -9.5100 8.5913 43 1 -1.3416 -11.2042 8.5110 44 1 -3.1834 -9.6384 7.9328 45 1 -2.7499 -10.6688 6.5478 46 1 -2.9704 -8.3031 5.9856 47 1 -0.9491 -8.0484 4.7737 48 1 -1.4618 -9.7521 4.7264 49 1 1.6751 -6.8434 0.4223 50 1 0.3515 -4.7825 0.2412 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493044300.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:09 Heat of formation + Delta-G solvation = -49.381565 kcal Electronic energy + Delta-G solvation = -29032.648053 eV Core-core repulsion = 25024.397317 eV Total energy + Delta-G solvation = -4008.250736 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.10836 -40.43351 -39.78064 -38.22644 -36.39196 -34.58569 -34.05189 -33.80303 -32.57118 -31.81986 -30.03292 -28.83662 -27.40565 -25.38980 -24.75375 -23.87769 -23.42761 -22.34412 -22.09744 -20.68101 -20.35062 -19.74232 -18.85346 -18.06532 -17.52767 -16.77264 -16.67561 -16.35643 -16.26390 -15.84007 -15.69244 -15.49780 -15.39335 -15.21454 -14.80972 -14.58915 -14.50794 -14.40533 -14.20321 -13.99313 -13.79812 -13.69905 -13.55903 -13.17606 -13.02365 -12.70522 -12.62227 -12.37031 -12.33567 -12.23215 -12.12902 -11.90222 -11.61303 -11.34264 -11.24058 -11.15378 -10.94043 -10.64208 -10.38184 -9.99852 -9.56006 -9.42213 -8.55070 -8.48268 -6.15749 0.00663 0.71651 1.13584 1.33006 1.46823 1.50396 2.17248 2.39126 2.51057 2.87118 3.20716 3.25099 3.52734 3.68819 3.84606 3.93116 4.02056 4.08361 4.13795 4.15995 4.17519 4.26309 4.35049 4.39994 4.48646 4.54666 4.60091 4.62603 4.67209 4.77268 4.79575 4.92170 4.94304 4.95306 5.05674 5.09850 5.11004 5.12125 5.22458 5.26868 5.27808 5.32705 5.47319 5.49807 5.57834 5.68328 5.72662 5.85732 6.02297 6.08494 6.25444 6.41780 6.75975 6.95260 7.49032 7.77570 8.74683 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.010634 B = 0.002217 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2632.494279 B =12628.474727 C =14713.675496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.025 4.025 3 Si 1.022 2.978 4 H -0.253 1.253 5 H -0.270 1.270 6 H -0.259 1.259 7 C -0.416 4.416 8 H 0.102 0.898 9 O -0.231 6.231 10 C 0.126 3.874 11 C -0.260 4.260 12 C -0.048 4.048 13 C -0.160 4.160 14 C 0.003 3.997 15 C -0.229 4.229 16 C 0.521 3.479 17 O -0.571 6.571 18 N -0.716 5.716 19 C 0.120 3.880 20 C -0.108 4.108 21 C -0.080 4.080 22 H 0.063 0.937 23 C -0.110 4.110 24 C -0.120 4.120 25 C 0.054 3.946 26 N -0.707 5.707 27 C 0.059 3.941 28 C 0.015 3.985 29 C -0.222 4.222 30 H 0.273 0.727 31 H 0.120 0.880 32 H 0.149 0.851 33 H 0.170 0.830 34 H 0.176 0.824 35 H 0.416 0.584 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.058 0.942 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.033 0.967 46 H 0.347 0.653 47 H 0.059 0.941 48 H 0.036 0.964 49 H 0.118 0.882 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.855 -27.813 10.967 30.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.178 1.178 5 H -0.194 1.194 6 H -0.183 1.183 7 C -0.492 4.492 8 H 0.120 0.880 9 O -0.137 6.137 10 C 0.075 3.925 11 C -0.279 4.279 12 C -0.066 4.066 13 C -0.161 4.161 14 C -0.016 4.016 15 C -0.250 4.250 16 C 0.312 3.688 17 O -0.451 6.451 18 N -0.369 5.369 19 C -0.004 4.004 20 C -0.147 4.147 21 C -0.100 4.100 22 H 0.082 0.918 23 C -0.148 4.148 24 C -0.157 4.157 25 C -0.075 4.075 26 N -0.339 5.339 27 C -0.071 4.071 28 C -0.004 4.004 29 C -0.242 4.242 30 H 0.082 0.918 31 H 0.138 0.862 32 H 0.166 0.834 33 H 0.187 0.813 34 H 0.193 0.807 35 H 0.253 0.747 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.102 0.898 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.094 0.906 42 H 0.077 0.923 43 H 0.100 0.900 44 H 0.096 0.904 45 H 0.051 0.949 46 H 0.165 0.835 47 H 0.077 0.923 48 H 0.054 0.946 49 H 0.136 0.864 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 5.557 -26.608 11.509 29.519 hybrid contribution -0.834 0.472 -0.564 1.112 sum 4.723 -26.137 10.946 28.727 Atomic orbital electron populations 1.70174 1.08161 1.28955 1.48640 1.26692 0.96911 1.02900 0.95718 0.84612 0.77389 0.73942 0.80011 1.17752 1.19414 1.18316 1.21852 0.92613 0.81402 1.53335 0.88024 1.83871 1.36291 1.12727 1.80846 1.20010 0.91754 0.87537 0.93172 1.21100 0.92783 1.00167 1.13835 1.21193 0.99841 0.90610 0.94965 1.18895 0.92771 0.94315 1.10130 1.22582 0.95386 0.89232 0.94433 1.23083 1.02272 1.02331 0.97287 1.19182 0.82185 0.84566 0.82873 1.91015 1.59306 1.23105 1.71716 1.45837 1.43194 1.12646 1.35176 1.21302 0.90976 0.98384 0.89743 1.21712 0.99870 0.95759 0.97317 1.21086 0.93785 0.98671 0.96450 0.91809 1.21594 0.99413 0.96454 0.97340 1.21612 0.94796 1.01411 0.97928 1.22000 0.98125 0.90677 0.96660 1.60246 1.14663 1.32085 1.26894 1.22033 0.92717 0.99610 0.92717 1.20658 0.93228 0.95531 0.90945 1.20181 0.99196 0.91028 1.13749 0.91756 0.86191 0.83371 0.81301 0.80659 0.74660 0.93539 0.93842 0.89790 0.89189 0.91340 0.90554 0.92310 0.89960 0.90369 0.94867 0.83474 0.92256 0.94601 0.86368 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.15 13.67 21.62 0.30 -58.86 16 2 C -0.02 -1.49 5.49 84.86 0.47 -1.02 16 3 Si 1.02 44.77 29.55 68.60 2.03 46.79 16 4 H -0.25 -10.30 7.11 99.48 0.71 -9.59 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.42 -25.74 9.48 67.94 0.64 -25.09 16 8 H 0.10 5.77 5.18 -2.91 -0.02 5.75 16 9 O -0.23 -15.04 9.74 -20.16 -0.20 -15.24 16 10 C 0.13 7.00 6.66 22.72 0.15 7.15 16 11 C -0.26 -12.47 9.14 22.34 0.20 -12.26 16 12 C -0.05 -1.83 9.78 22.55 0.22 -1.61 16 13 C -0.16 -5.65 4.54 -20.12 -0.09 -5.75 16 14 C 0.00 0.07 9.80 23.82 0.23 0.30 16 15 C -0.23 -4.44 9.90 23.61 0.23 -4.20 16 16 C 0.52 13.91 6.77 86.33 0.58 14.49 16 17 O -0.57 -22.32 12.18 -4.45 -0.05 -22.38 16 18 N -0.72 -13.25 5.55 -467.49 -2.60 -15.84 16 19 C 0.12 2.45 5.43 86.38 0.47 2.92 16 20 C -0.11 -1.32 4.80 30.59 0.15 -1.17 16 21 C -0.08 -1.19 2.35 -10.74 -0.03 -1.22 16 22 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 23 C -0.11 -1.23 5.29 30.67 0.16 -1.06 16 24 C -0.12 -1.45 6.09 30.65 0.19 -1.26 16 25 C 0.05 0.74 6.55 86.33 0.57 1.30 16 26 N -0.71 -12.52 6.85 -514.00 -3.52 -16.04 16 27 C 0.06 1.03 5.57 86.33 0.48 1.51 16 28 C 0.01 0.60 6.60 22.55 0.15 0.75 16 29 C -0.22 -11.09 9.97 22.35 0.22 -10.86 16 30 H 0.27 16.02 8.31 -92.71 -0.77 15.25 16 31 H 0.12 5.74 5.62 -2.91 -0.02 5.73 16 32 H 0.15 4.32 8.06 -2.91 -0.02 4.30 16 33 H 0.17 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.42 4.15 8.45 -92.71 -0.78 3.37 16 36 H 0.05 1.17 6.59 -2.39 -0.02 1.15 16 37 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 46 H 0.35 5.62 8.90 -89.69 -0.80 4.82 16 47 H 0.06 1.28 6.61 -2.39 -0.02 1.27 16 48 H 0.04 0.58 8.14 -2.38 -0.02 0.56 16 49 H 0.12 4.28 7.02 -2.91 -0.02 4.26 16 50 H 0.10 5.03 8.06 -2.91 -0.02 5.01 16 Total: -1.00 -85.69 401.55 0.34 -85.35 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.62 Total: 33.29 kcal Atomic # 6 Polarization: -42.09 SS G_CDS: 5.00 Total: -37.09 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -5.82 Total: -90.74 kcal Atomic # 8 Polarization: -37.36 SS G_CDS: -0.25 Total: -37.61 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -85.69 0.34 -85.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493044300.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.968 kcal (2) G-P(sol) polarization free energy of solvation -85.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds