Wall clock time and date at job start Wed Apr 1 2020 03:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48503 * 109.47153 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47251 * 300.00023 * 3 2 1 6 6 H 1.48500 * 109.46906 * 59.99896 * 3 2 1 7 7 C 1.38712 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00182 * 180.02562 * 7 2 1 9 9 O 1.34783 * 120.00468 * 359.97438 * 7 2 1 10 10 C 1.35564 * 117.00530 * 185.54464 * 9 7 2 11 11 C 1.39180 * 119.89946 * 6.02871 * 10 9 7 12 12 C 1.37592 * 120.10487 * 180.02562 * 11 10 9 13 13 C 1.40030 * 119.89604 * 359.97438 * 12 11 10 14 14 C 1.46960 * 120.10160 * 179.97438 * 13 12 11 15 15 C 1.35018 * 120.00120 * 133.09954 * 14 13 12 16 16 C 1.46261 * 120.00010 * 349.58895 * 15 14 13 17 17 O 1.21713 * 119.99642 * 353.03771 * 16 15 14 18 18 N 1.34773 * 119.99612 * 173.30980 * 16 15 14 19 19 C 1.46930 * 120.63643 * 4.47659 * 18 16 15 20 20 C 1.52755 * 109.00869 * 233.58387 * 19 18 16 21 21 C 1.53039 * 109.38189 * 305.58358 * 20 19 18 22 22 C 1.53000 * 109.44880 * 181.25470 * 21 20 19 23 23 C 1.53005 * 109.47233 * 64.94001 * 22 21 20 24 24 N 1.46895 * 109.47142 * 180.02562 * 23 22 21 25 25 C 1.53045 * 109.53883 * 61.24419 * 21 20 19 26 26 C 1.46924 * 120.62700 * 184.75482 * 18 16 15 27 27 C 1.40027 * 119.80063 * 0.27196 * 13 12 11 28 28 C 1.37605 * 119.89027 * 359.44636 * 27 13 12 29 29 H 0.96999 * 120.00050 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.94487 * 0.02562 * 11 10 9 31 31 H 1.07999 * 120.05454 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.99790 * 313.10478 * 14 13 12 33 33 H 1.08001 * 119.99922 * 169.58653 * 15 14 13 34 34 H 1.09004 * 109.58235 * 353.41703 * 19 18 16 35 35 H 1.09002 * 109.58434 * 113.84037 * 19 18 16 36 36 H 1.08995 * 109.56276 * 185.55187 * 20 19 18 37 37 H 1.09003 * 109.36265 * 65.49929 * 20 19 18 38 38 H 1.09001 * 109.46409 * 301.22108 * 21 20 19 39 39 H 1.09000 * 109.47638 * 184.94124 * 22 21 20 40 40 H 1.09007 * 109.47234 * 304.94271 * 22 21 20 41 41 H 1.09004 * 109.46863 * 300.00043 * 23 22 21 42 42 H 1.08998 * 109.46973 * 60.00102 * 23 22 21 43 43 H 1.00902 * 110.99748 * 180.02562 * 24 23 22 44 44 H 1.00894 * 111.00432 * 303.95449 * 24 23 22 45 45 H 1.08994 * 109.49946 * 178.68183 * 25 21 20 46 46 H 1.09002 * 109.52014 * 58.59975 * 25 21 20 47 47 H 1.09000 * 109.58962 * 246.15665 * 26 18 16 48 48 H 1.09001 * 109.58738 * 6.43805 * 26 18 16 49 49 H 1.07997 * 120.05383 * 179.70103 * 27 13 12 50 50 H 1.08005 * 119.94597 * 180.27493 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0001 9 8 1.3348 -2.3686 -0.0005 10 6 2.0683 -3.5027 0.1156 11 6 3.4373 -3.4223 0.3536 12 6 4.1858 -4.5707 0.4717 13 6 3.5682 -5.8218 0.3526 14 6 4.3635 -7.0513 0.4774 15 6 3.9258 -8.0621 1.2582 16 6 2.7881 -7.8547 2.1537 17 8 2.3163 -6.7410 2.2901 18 7 2.2659 -8.8957 2.8318 19 6 2.8878 -10.2248 2.7585 20 6 1.8303 -11.2468 2.3452 21 6 0.6399 -11.1615 3.3032 22 6 -0.4066 -12.2059 2.9096 23 6 0.1733 -13.6082 3.1058 24 7 -0.8313 -14.6109 2.7273 25 6 0.0199 -9.7644 3.2262 26 6 1.0602 -8.7243 3.6538 27 6 2.1916 -5.8978 0.1081 28 6 1.4500 -4.7440 -0.0028 29 1 -0.4850 0.8400 -0.0004 30 1 3.9127 -2.4569 0.4457 31 1 5.2480 -4.5074 0.6568 32 1 5.2982 -7.1462 -0.0553 33 1 4.4158 -9.0239 1.2215 34 1 3.6901 -10.2126 2.0207 35 1 3.2905 -10.4942 3.7349 36 1 2.2568 -12.2491 2.3833 37 1 1.4966 -11.0313 1.3302 38 1 0.9787 -11.3529 4.3215 39 1 -1.2912 -12.0878 3.5354 40 1 -0.6807 -12.0693 1.8635 41 1 1.0579 -13.7264 2.4800 42 1 0.4474 -13.7448 4.1519 43 1 -0.4723 -15.5460 2.8485 44 1 -1.6856 -14.4815 3.2484 45 1 -0.8420 -9.7117 3.8913 46 1 -0.2971 -9.5625 2.2031 47 1 1.3107 -8.8689 4.7047 48 1 0.6584 -7.7215 3.5086 49 1 1.7119 -6.8605 0.0107 50 1 0.3874 -4.8016 -0.1870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493155783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:33 Heat of formation + Delta-G solvation = -17.328441 kcal Electronic energy + Delta-G solvation = -29538.286974 eV Core-core repulsion = 25531.426166 eV Total energy + Delta-G solvation = -4006.860808 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.26477 -38.94228 -38.10781 -36.46797 -35.59300 -33.33243 -33.03039 -32.12940 -31.27597 -30.08223 -28.96605 -27.87728 -25.50155 -24.87637 -23.63655 -23.00643 -21.80538 -21.56323 -20.80004 -20.01777 -18.43247 -17.85280 -17.40171 -16.76199 -16.39111 -15.71360 -15.41355 -15.14540 -14.84765 -14.66285 -14.50010 -14.41829 -14.21806 -13.77192 -13.70434 -13.53413 -13.28051 -13.12394 -12.93161 -12.83629 -12.53353 -12.30165 -12.14578 -12.00210 -11.67013 -11.65123 -11.43899 -11.34696 -11.08917 -10.98021 -10.77124 -10.58929 -10.54454 -10.46399 -10.35817 -9.45822 -9.34990 -9.16631 -9.12245 -8.69212 -8.56638 -7.89917 -6.84336 -6.43175 -3.98923 1.29780 2.44952 2.69673 3.11382 3.15461 3.16051 3.21617 3.62795 3.99338 4.03226 4.34532 4.41956 4.62411 4.71409 4.76035 4.79044 4.96456 4.98358 5.09179 5.12824 5.17325 5.18852 5.29106 5.30698 5.36444 5.46236 5.55583 5.57532 5.63950 5.65962 5.75161 5.77327 5.85737 5.87356 5.88899 5.93795 6.16695 6.28136 6.34140 6.44906 6.58207 6.65673 6.67614 6.82435 6.94438 7.06780 7.15494 7.38622 7.47102 7.53475 7.59382 7.95546 8.03614 8.54765 9.02725 9.75512 10.74954 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.002030 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.962229 B =13792.857133 C =14600.030636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.038 3.962 3 Si 0.942 3.058 4 H -0.266 1.266 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.389 4.389 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.169 3.831 11 C -0.247 4.247 12 C -0.044 4.044 13 C -0.184 4.184 14 C 0.025 3.975 15 C -0.265 4.265 16 C 0.542 3.458 17 O -0.510 6.510 18 N -0.618 5.618 19 C 0.108 3.892 20 C -0.132 4.132 21 C -0.085 4.085 22 C -0.113 4.113 23 C 0.059 3.941 24 N -0.854 5.854 25 C -0.128 4.128 26 C 0.113 3.887 27 C 0.006 3.994 28 C -0.200 4.200 29 H 0.270 0.730 30 H 0.126 0.874 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.024 0.976 43 H 0.341 0.659 44 H 0.340 0.660 45 H 0.072 0.928 46 H 0.068 0.932 47 H 0.059 0.941 48 H 0.094 0.906 49 H 0.100 0.900 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.830 -26.593 6.633 27.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.465 4.465 8 H 0.111 0.889 9 O -0.077 6.077 10 C 0.115 3.885 11 C -0.267 4.267 12 C -0.062 4.062 13 C -0.184 4.184 14 C 0.006 3.994 15 C -0.286 4.286 16 C 0.334 3.666 17 O -0.386 6.386 18 N -0.353 5.353 19 C -0.015 4.015 20 C -0.170 4.170 21 C -0.104 4.104 22 C -0.151 4.151 23 C -0.072 4.072 24 N -0.383 5.383 25 C -0.166 4.166 26 C -0.010 4.010 27 C -0.013 4.013 28 C -0.219 4.219 29 H 0.080 0.920 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.141 0.859 34 H 0.106 0.894 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.043 0.957 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.091 0.909 46 H 0.087 0.913 47 H 0.078 0.922 48 H 0.113 0.887 49 H 0.118 0.882 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.181 -25.407 5.960 26.430 hybrid contribution 0.585 0.226 1.222 1.373 sum 4.766 -25.181 7.182 26.616 Atomic orbital electron populations 1.70034 1.06013 1.27592 1.45840 1.25325 0.95845 0.98902 0.96564 0.85636 0.79182 0.80324 0.78227 1.19049 1.20134 1.20146 1.21426 0.91894 0.80834 1.52338 0.88912 1.83923 1.34660 1.11664 1.77415 1.19528 0.90328 0.87695 0.90975 1.20957 0.94288 0.98676 1.12730 1.20718 0.97845 0.91382 0.96294 1.18287 0.93686 0.91861 1.14615 1.22358 0.95225 0.91400 0.90434 1.22743 1.02271 1.00379 1.03205 1.18485 0.83589 0.83979 0.80549 1.90990 1.61066 1.22372 1.64165 1.48047 1.28700 1.09273 1.49319 1.21643 0.95769 0.82386 1.01724 1.21971 0.96020 0.98901 1.00098 1.21110 0.95228 0.94627 0.99405 1.21623 0.97944 0.92945 1.02630 1.21886 0.95261 0.91999 0.98028 1.58722 1.07830 1.06694 1.65073 1.21959 0.98023 0.93972 1.02679 1.21485 0.84965 1.00752 0.93754 1.20412 0.91774 0.96026 0.93092 1.19995 0.99581 0.90009 1.12337 0.92043 0.85671 0.87660 0.86087 0.85922 0.89369 0.91993 0.90841 0.91183 0.91223 0.92116 0.90972 0.90770 0.95748 0.84741 0.84829 0.90923 0.91285 0.92225 0.88724 0.88182 0.86867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 2 C 0.04 1.07 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.95 29.55 -169.99 -5.02 15.93 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.39 -11.19 9.43 30.91 0.29 -10.90 16 8 H 0.09 2.48 5.28 -52.48 -0.28 2.20 16 9 O -0.17 -5.18 9.74 0.75 0.01 -5.18 16 10 C 0.17 4.38 6.66 -38.88 -0.26 4.12 16 11 C -0.25 -5.74 9.11 -39.47 -0.36 -6.10 16 12 C -0.04 -0.87 9.78 -39.15 -0.38 -1.26 16 13 C -0.18 -3.45 4.40 -105.02 -0.46 -3.91 16 14 C 0.03 0.36 9.78 -37.20 -0.36 0.00 16 15 C -0.27 -3.44 9.25 -37.50 -0.35 -3.78 16 16 C 0.54 8.31 6.78 -13.04 -0.09 8.22 16 17 O -0.51 -10.19 11.77 5.18 0.06 -10.13 16 18 N -0.62 -7.32 2.98 -174.73 -0.52 -7.84 16 19 C 0.11 0.87 6.32 -3.93 -0.02 0.85 16 20 C -0.13 -0.91 5.13 -26.84 -0.14 -1.05 16 21 C -0.08 -0.59 2.15 -90.58 -0.19 -0.79 16 22 C -0.11 -0.75 4.94 -26.73 -0.13 -0.88 16 23 C 0.06 0.34 6.54 -3.82 -0.03 0.32 16 24 N -0.85 -4.96 9.62 -10.37 -0.10 -5.06 16 25 C -0.13 -1.14 5.36 -26.61 -0.14 -1.28 16 26 C 0.11 1.27 6.42 -3.71 -0.02 1.25 16 27 C 0.01 0.11 6.69 -39.14 -0.26 -0.15 16 28 C -0.20 -4.66 9.97 -39.46 -0.39 -5.06 16 29 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 30 H 0.13 2.88 5.70 -52.48 -0.30 2.59 16 31 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 32 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.12 1.14 5.86 -52.49 -0.31 0.84 16 34 H 0.09 0.63 5.30 -51.93 -0.28 0.35 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.39 6.50 -51.93 -0.34 0.05 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.07 0.44 6.53 -51.93 -0.34 0.10 16 42 H 0.02 0.13 8.14 -51.93 -0.42 -0.29 16 43 H 0.34 1.46 9.08 -39.29 -0.36 1.10 16 44 H 0.34 1.64 8.99 -39.29 -0.35 1.29 16 45 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 1.33 7.03 -51.93 -0.37 0.97 16 49 H 0.10 1.86 7.33 -52.49 -0.38 1.48 16 50 H 0.11 2.57 8.06 -52.48 -0.42 2.15 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -34.42 396.26 -9.75 -44.18 By element: Atomic # 1 Polarization: 14.08 SS G_CDS: -7.50 Total: 6.58 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: -3.40 Total: -19.43 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.14 Total: -37.91 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: 0.07 Total: -15.31 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.42 -9.75 -44.18 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493155783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.849 kcal (2) G-P(sol) polarization free energy of solvation -34.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds