Wall clock time and date at job start Wed Apr 1 2020 03:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99961 * 2 1 4 4 H 1.48503 * 109.47153 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47251 * 300.00023 * 3 2 1 6 6 H 1.48500 * 109.46906 * 59.99896 * 3 2 1 7 7 C 1.38712 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00182 * 180.02562 * 7 2 1 9 9 O 1.34783 * 120.00468 * 359.97438 * 7 2 1 10 10 C 1.35564 * 117.00530 * 185.54464 * 9 7 2 11 11 C 1.39180 * 119.89946 * 6.02871 * 10 9 7 12 12 C 1.37592 * 120.10487 * 180.02562 * 11 10 9 13 13 C 1.40030 * 119.89604 * 359.97438 * 12 11 10 14 14 C 1.46960 * 120.10160 * 179.97438 * 13 12 11 15 15 C 1.35018 * 120.00120 * 133.09954 * 14 13 12 16 16 C 1.46261 * 120.00010 * 349.58895 * 15 14 13 17 17 O 1.21713 * 119.99642 * 353.03771 * 16 15 14 18 18 N 1.34773 * 119.99612 * 173.30980 * 16 15 14 19 19 C 1.46930 * 120.63643 * 4.47659 * 18 16 15 20 20 C 1.52755 * 109.00869 * 233.58387 * 19 18 16 21 21 C 1.53039 * 109.38189 * 305.58358 * 20 19 18 22 22 C 1.53000 * 109.44880 * 181.25470 * 21 20 19 23 23 C 1.53005 * 109.47233 * 64.94001 * 22 21 20 24 24 N 1.46895 * 109.47142 * 180.02562 * 23 22 21 25 25 C 1.53045 * 109.53883 * 61.24419 * 21 20 19 26 26 C 1.46924 * 120.62700 * 184.75482 * 18 16 15 27 27 C 1.40027 * 119.80063 * 0.27196 * 13 12 11 28 28 C 1.37605 * 119.89027 * 359.44636 * 27 13 12 29 29 H 0.96999 * 120.00050 * 0.02562 * 1 2 3 30 30 H 1.08003 * 119.94487 * 0.02562 * 11 10 9 31 31 H 1.07999 * 120.05454 * 180.02562 * 12 11 10 32 32 H 1.08001 * 119.99790 * 313.10478 * 14 13 12 33 33 H 1.08001 * 119.99922 * 169.58653 * 15 14 13 34 34 H 1.09004 * 109.58235 * 353.41703 * 19 18 16 35 35 H 1.09002 * 109.58434 * 113.84037 * 19 18 16 36 36 H 1.08995 * 109.56276 * 185.55187 * 20 19 18 37 37 H 1.09003 * 109.36265 * 65.49929 * 20 19 18 38 38 H 1.09001 * 109.46409 * 301.22108 * 21 20 19 39 39 H 1.09000 * 109.47638 * 184.94124 * 22 21 20 40 40 H 1.09007 * 109.47234 * 304.94271 * 22 21 20 41 41 H 1.09004 * 109.46863 * 300.00043 * 23 22 21 42 42 H 1.08998 * 109.46973 * 60.00102 * 23 22 21 43 43 H 1.00902 * 110.99748 * 180.02562 * 24 23 22 44 44 H 1.00894 * 111.00432 * 303.95449 * 24 23 22 45 45 H 1.08994 * 109.49946 * 178.68183 * 25 21 20 46 46 H 1.09002 * 109.52014 * 58.59975 * 25 21 20 47 47 H 1.09000 * 109.58962 * 246.15665 * 26 18 16 48 48 H 1.09001 * 109.58738 * 6.43805 * 26 18 16 49 49 H 1.07997 * 120.05383 * 179.70103 * 27 13 12 50 50 H 1.08005 * 119.94597 * 180.27493 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2013 -0.0001 9 8 1.3348 -2.3686 -0.0005 10 6 2.0683 -3.5027 0.1156 11 6 3.4373 -3.4223 0.3536 12 6 4.1858 -4.5707 0.4717 13 6 3.5682 -5.8218 0.3526 14 6 4.3635 -7.0513 0.4774 15 6 3.9258 -8.0621 1.2582 16 6 2.7881 -7.8547 2.1537 17 8 2.3163 -6.7410 2.2901 18 7 2.2659 -8.8957 2.8318 19 6 2.8878 -10.2248 2.7585 20 6 1.8303 -11.2468 2.3452 21 6 0.6399 -11.1615 3.3032 22 6 -0.4066 -12.2059 2.9096 23 6 0.1733 -13.6082 3.1058 24 7 -0.8313 -14.6109 2.7273 25 6 0.0199 -9.7644 3.2262 26 6 1.0602 -8.7243 3.6538 27 6 2.1916 -5.8978 0.1081 28 6 1.4500 -4.7440 -0.0028 29 1 -0.4850 0.8400 -0.0004 30 1 3.9127 -2.4569 0.4457 31 1 5.2480 -4.5074 0.6568 32 1 5.2982 -7.1462 -0.0553 33 1 4.4158 -9.0239 1.2215 34 1 3.6901 -10.2126 2.0207 35 1 3.2905 -10.4942 3.7349 36 1 2.2568 -12.2491 2.3833 37 1 1.4966 -11.0313 1.3302 38 1 0.9787 -11.3529 4.3215 39 1 -1.2912 -12.0878 3.5354 40 1 -0.6807 -12.0693 1.8635 41 1 1.0579 -13.7264 2.4800 42 1 0.4474 -13.7448 4.1519 43 1 -0.4723 -15.5460 2.8485 44 1 -1.6856 -14.4815 3.2484 45 1 -0.8420 -9.7117 3.8913 46 1 -0.2971 -9.5625 2.2031 47 1 1.3107 -8.8689 4.7047 48 1 0.6584 -7.7215 3.5086 49 1 1.7119 -6.8605 0.0107 50 1 0.3874 -4.8016 -0.1870 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493155783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:31 Heat of formation + Delta-G solvation = -40.889512 kcal Electronic energy + Delta-G solvation = -29539.308659 eV Core-core repulsion = 25531.426166 eV Total energy + Delta-G solvation = -4007.882493 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.35665 -40.62032 -39.21039 -38.04197 -36.37832 -34.66386 -34.13951 -33.77423 -32.11524 -31.81333 -29.94677 -29.14750 -27.44007 -25.86132 -24.39861 -24.06047 -23.49205 -22.69062 -21.77271 -20.94041 -19.93715 -19.39477 -18.76221 -18.38033 -16.94483 -16.83658 -16.40092 -16.36420 -16.05902 -15.86184 -15.70466 -15.54242 -15.43192 -15.27138 -14.94110 -14.59075 -14.53454 -14.42219 -14.12663 -13.88875 -13.83599 -13.64684 -13.56408 -13.09677 -12.95902 -12.66662 -12.61356 -12.34055 -12.28547 -12.21107 -12.12176 -12.07934 -11.72362 -11.35352 -11.27807 -11.15864 -10.89531 -10.55526 -10.39211 -9.76459 -9.57304 -9.40769 -8.57640 -8.49354 -6.16233 0.02120 0.70180 1.08707 1.33143 1.44071 1.52757 2.16561 2.17042 2.46457 2.85771 3.21079 3.49735 3.54680 3.68893 3.75104 3.95646 3.98742 4.07009 4.12221 4.15873 4.17863 4.28411 4.31667 4.47026 4.49633 4.54472 4.61812 4.64520 4.71531 4.75268 4.84939 4.87816 4.90244 5.03319 5.05055 5.09126 5.11443 5.14245 5.19575 5.25372 5.27482 5.33751 5.44434 5.54599 5.65690 5.70135 5.72303 5.83906 6.01757 6.24462 6.28175 6.56940 6.60834 6.94961 7.39611 7.77555 8.74673 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.020569 B = 0.002030 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.962229 B =13792.857133 C =14600.030636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.026 4.026 3 Si 1.023 2.977 4 H -0.250 1.250 5 H -0.266 1.266 6 H -0.268 1.268 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.232 6.232 10 C 0.125 3.875 11 C -0.255 4.255 12 C -0.050 4.050 13 C -0.154 4.154 14 C 0.005 3.995 15 C -0.232 4.232 16 C 0.525 3.475 17 O -0.571 6.571 18 N -0.611 5.611 19 C 0.101 3.899 20 C -0.127 4.127 21 C -0.078 4.078 22 C -0.108 4.108 23 C 0.062 3.938 24 N -0.867 5.867 25 C -0.122 4.122 26 C 0.110 3.890 27 C 0.008 3.992 28 C -0.219 4.219 29 H 0.273 0.727 30 H 0.120 0.880 31 H 0.148 0.852 32 H 0.171 0.829 33 H 0.175 0.825 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.077 0.923 42 H 0.034 0.966 43 H 0.349 0.651 44 H 0.344 0.656 45 H 0.080 0.920 46 H 0.048 0.952 47 H 0.075 0.925 48 H 0.055 0.945 49 H 0.116 0.884 50 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.717 -30.705 7.455 32.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.223 4.223 3 Si 0.842 3.158 4 H -0.173 1.173 5 H -0.190 1.190 6 H -0.193 1.193 7 C -0.490 4.490 8 H 0.120 0.880 9 O -0.139 6.139 10 C 0.074 3.926 11 C -0.274 4.274 12 C -0.068 4.068 13 C -0.154 4.154 14 C -0.015 4.015 15 C -0.252 4.252 16 C 0.317 3.683 17 O -0.452 6.452 18 N -0.344 5.344 19 C -0.020 4.020 20 C -0.165 4.165 21 C -0.097 4.097 22 C -0.146 4.146 23 C -0.069 4.069 24 N -0.398 5.398 25 C -0.160 4.160 26 C -0.013 4.013 27 C -0.011 4.011 28 C -0.238 4.238 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.166 0.834 32 H 0.188 0.812 33 H 0.192 0.808 34 H 0.125 0.875 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.075 0.925 38 H 0.101 0.899 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.052 0.948 43 H 0.162 0.838 44 H 0.156 0.844 45 H 0.099 0.901 46 H 0.067 0.933 47 H 0.094 0.906 48 H 0.074 0.926 49 H 0.134 0.866 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.100 -29.649 6.797 31.478 hybrid contribution -0.565 0.922 1.111 1.551 sum 7.535 -28.726 7.907 30.733 Atomic orbital electron populations 1.70188 1.08183 1.28815 1.48786 1.26700 0.96914 1.02926 0.95758 0.84475 0.78250 0.74453 0.78633 1.17299 1.19042 1.19339 1.21918 0.92583 0.81381 1.53095 0.88017 1.83886 1.36255 1.12789 1.80934 1.19996 0.91777 0.87481 0.93325 1.21094 0.93442 1.00024 1.12872 1.21164 0.99718 0.90467 0.95429 1.18869 0.93255 0.93957 1.09344 1.22612 0.96809 0.89179 0.92873 1.23183 0.99825 1.01759 1.00416 1.19147 0.84203 0.83839 0.81100 1.90991 1.63118 1.24926 1.66150 1.48183 1.28230 1.10261 1.47732 1.22003 0.96300 0.80143 1.03599 1.21956 0.95553 0.99919 0.99087 1.21061 0.95346 0.92941 1.00322 1.21536 0.97929 0.93621 1.01490 1.21845 0.95200 0.91174 0.98646 1.58722 1.08224 1.07348 1.65458 1.21896 0.97765 0.94787 1.01541 1.21501 0.85578 0.99497 0.94713 1.20616 0.92836 0.95302 0.92322 1.20170 0.99563 0.90723 1.13337 0.91778 0.86237 0.83422 0.81150 0.80785 0.87491 0.89928 0.88188 0.92516 0.89869 0.92169 0.92675 0.90440 0.94795 0.83765 0.84379 0.90127 0.93275 0.90635 0.92619 0.86631 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.16 13.67 21.62 0.30 -58.86 16 2 C -0.03 -1.54 5.49 84.85 0.47 -1.07 16 3 Si 1.02 44.71 29.55 68.60 2.03 46.74 16 4 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 7 C -0.41 -25.56 9.43 67.93 0.64 -24.92 16 8 H 0.10 5.78 5.28 -2.91 -0.02 5.76 16 9 O -0.23 -15.14 9.74 -20.22 -0.20 -15.34 16 10 C 0.12 6.95 6.66 22.72 0.15 7.11 16 11 C -0.26 -12.30 9.11 22.34 0.20 -12.09 16 12 C -0.05 -1.91 9.78 22.55 0.22 -1.69 16 13 C -0.15 -5.47 4.40 -20.12 -0.09 -5.56 16 14 C 0.00 0.11 9.78 23.82 0.23 0.34 16 15 C -0.23 -4.78 9.25 23.62 0.22 -4.56 16 16 C 0.52 14.85 6.78 86.33 0.59 15.43 16 17 O -0.57 -22.90 11.77 -4.39 -0.05 -22.95 16 18 N -0.61 -12.90 2.98 -824.93 -2.46 -15.36 16 19 C 0.10 1.14 6.32 86.22 0.54 1.68 16 20 C -0.13 -1.24 5.13 30.53 0.16 -1.09 16 21 C -0.08 -0.86 2.15 -10.77 -0.02 -0.89 16 22 C -0.11 -1.19 4.94 30.60 0.15 -1.04 16 23 C 0.06 0.54 6.54 86.31 0.56 1.10 16 24 N -0.87 -8.14 9.62 -186.72 -1.80 -9.94 16 25 C -0.12 -2.05 5.36 30.67 0.16 -1.89 16 26 C 0.11 2.41 6.42 86.36 0.55 2.96 16 27 C 0.01 0.31 6.69 22.55 0.15 0.46 16 28 C -0.22 -10.96 9.97 22.35 0.22 -10.74 16 29 H 0.27 15.93 8.31 -92.71 -0.77 15.16 16 30 H 0.12 5.76 5.70 -2.91 -0.02 5.74 16 31 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.17 2.50 8.06 -2.91 -0.02 2.47 16 33 H 0.18 1.87 5.86 -2.91 -0.02 1.85 16 34 H 0.11 0.81 5.30 -2.38 -0.01 0.80 16 35 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 0.53 6.50 -2.39 -0.02 0.52 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 41 H 0.08 0.62 6.53 -2.39 -0.02 0.61 16 42 H 0.03 0.24 8.14 -2.39 -0.02 0.22 16 43 H 0.35 2.18 9.08 -89.69 -0.81 1.36 16 44 H 0.34 2.69 8.99 -89.70 -0.81 1.89 16 45 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 48 H 0.06 1.67 7.03 -2.39 -0.02 1.65 16 49 H 0.12 4.30 7.33 -2.91 -0.02 4.28 16 50 H 0.10 5.07 8.06 -2.91 -0.02 5.04 16 Total: -1.00 -85.75 396.26 2.29 -83.45 By element: Atomic # 1 Polarization: 29.35 SS G_CDS: -0.65 Total: 28.70 kcal Atomic # 6 Polarization: -41.57 SS G_CDS: 5.12 Total: -36.45 kcal Atomic # 7 Polarization: -80.20 SS G_CDS: -3.96 Total: -84.16 kcal Atomic # 8 Polarization: -38.04 SS G_CDS: -0.25 Total: -38.29 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -85.75 2.29 -83.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493155783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.565 kcal (2) G-P(sol) polarization free energy of solvation -85.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds