Wall clock time and date at job start Wed Apr 1 2020 03:27:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99752 * 2 1 4 4 H 1.48499 * 109.47084 * 239.99816 * 3 2 1 5 5 H 1.48494 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46796 * 120.00533 * 3 2 1 7 7 C 1.38807 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00185 * 163.32598 * 7 2 1 9 9 N 1.36935 * 119.99943 * 343.32262 * 7 2 1 10 10 C 1.46923 * 120.63109 * 330.75711 * 9 7 2 11 11 C 1.53194 * 108.77871 * 233.63446 * 10 9 7 12 12 C 1.53041 * 109.30668 * 305.36304 * 11 10 9 13 13 C 1.53003 * 109.45730 * 181.38578 * 12 11 10 14 14 N 1.46499 * 109.47420 * 174.97246 * 13 12 11 15 15 C 1.34776 * 120.00218 * 179.97438 * 14 13 12 16 16 O 1.21696 * 120.00109 * 0.02562 * 15 14 13 17 17 C 1.46434 * 119.99811 * 180.27382 * 15 14 13 18 18 C 1.34814 * 119.99463 * 172.66498 * 17 15 14 19 19 C 1.47205 * 120.00378 * 350.37548 * 18 17 15 20 20 C 1.39855 * 120.16978 * 136.25223 * 19 18 17 21 21 C 1.37863 * 119.82383 * 180.02562 * 20 19 18 22 22 C 1.38425 * 120.17552 * 359.97438 * 21 20 19 23 23 C 1.38379 * 120.34380 * 0.02562 * 22 21 20 24 24 C 1.50700 * 119.91370 * 180.02562 * 23 22 21 25 25 O 1.42902 * 109.47295 * 89.99828 * 24 23 22 26 26 C 1.37912 * 120.16761 * 359.71417 * 23 22 21 27 27 C 1.53037 * 109.52970 * 61.37611 * 12 11 10 28 28 C 1.46927 * 120.63054 * 150.78149 * 9 7 2 29 29 H 0.97000 * 120.00232 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58875 * 113.84435 * 10 9 7 31 31 H 1.09005 * 109.70395 * 353.48967 * 10 9 7 32 32 H 1.08998 * 109.49584 * 185.41463 * 11 10 9 33 33 H 1.08993 * 109.49952 * 65.31525 * 11 10 9 34 34 H 1.09000 * 109.46113 * 301.35484 * 12 11 10 35 35 H 1.09007 * 109.47154 * 54.97087 * 13 12 11 36 36 H 1.08997 * 109.47525 * 294.97577 * 13 12 11 37 37 H 0.97000 * 119.99545 * 0.02562 * 14 13 12 38 38 H 1.07993 * 120.00043 * 352.66799 * 17 15 14 39 39 H 1.07999 * 119.99434 * 170.37324 * 18 17 15 40 40 H 1.07998 * 120.08220 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.91431 * 180.02562 * 21 20 19 42 42 H 1.08000 * 119.82506 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.46850 * 209.99897 * 24 23 22 44 44 H 1.09004 * 109.47298 * 329.99301 * 24 23 22 45 45 H 0.96697 * 113.99747 * 180.02562 * 25 24 23 46 46 H 1.08004 * 120.08941 * 180.27870 * 26 23 22 47 47 H 1.08997 * 109.49639 * 58.57535 * 27 12 11 48 48 H 1.09000 * 109.49688 * 178.67213 * 27 12 11 49 49 H 1.08998 * 109.58452 * 246.15135 * 28 9 7 50 50 H 1.08997 * 109.58714 * 6.44091 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0563 -1.2216 -0.2689 9 7 1.3688 -2.3632 0.3393 10 6 0.2364 -2.3465 1.2752 11 6 0.5176 -3.3396 2.4073 12 6 0.8190 -4.7159 1.8098 13 6 1.0665 -5.7186 2.9387 14 7 1.2362 -7.0592 2.3729 15 6 1.4672 -8.1093 3.1854 16 8 1.5343 -7.9441 4.3892 17 6 1.6428 -9.4483 2.6192 18 6 2.0194 -10.4714 3.4124 19 6 2.4582 -10.2096 4.7929 20 6 2.0110 -11.0232 5.8388 21 6 2.4261 -10.7713 7.1291 22 6 3.2836 -9.7166 7.3907 23 6 3.7305 -8.9070 6.3612 24 6 4.6643 -7.7618 6.6570 25 8 6.0167 -8.2148 6.5684 26 6 3.3285 -9.1495 5.0645 27 6 2.0641 -4.6278 0.9243 28 6 1.8003 -3.6495 -0.2248 29 1 -0.4850 0.8400 0.0004 30 1 -0.6744 -2.6373 0.7520 31 1 0.1163 -1.3452 1.6890 32 1 -0.3553 -3.4080 3.0564 33 1 1.3760 -2.9982 2.9858 34 1 -0.0300 -5.0457 1.2109 35 1 0.2151 -5.7166 3.6195 36 1 1.9677 -5.4374 3.4834 37 1 1.1830 -7.1908 1.4133 38 1 1.4707 -9.6163 1.5664 39 1 1.9990 -11.4830 3.0348 40 1 1.3417 -11.8462 5.6362 41 1 2.0820 -11.3989 7.9379 42 1 3.6055 -9.5245 8.4036 43 1 4.5005 -6.9632 5.9333 44 1 4.4719 -7.3863 7.6620 45 1 6.6739 -7.5285 6.7477 46 1 3.6816 -8.5196 4.2614 47 1 2.9077 -4.2742 1.5170 48 1 2.2920 -5.6131 0.5179 49 1 1.0169 -4.0465 -0.8703 50 1 2.7132 -3.5071 -0.8030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493227117.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:36 Heat of formation + Delta-G solvation = -21.316525 kcal Electronic energy + Delta-G solvation = -29684.102536 eV Core-core repulsion = 25677.068792 eV Total energy + Delta-G solvation = -4007.033744 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.28763 -39.07572 -37.83511 -36.78400 -35.04710 -33.95704 -32.87999 -31.67443 -30.89622 -29.97590 -29.58022 -26.99797 -26.11479 -24.60412 -23.53551 -22.34757 -21.82854 -21.27932 -20.91327 -19.59856 -18.98492 -17.60931 -17.44448 -16.76256 -16.46715 -16.00070 -15.58958 -15.24210 -15.01300 -14.72530 -14.43888 -14.05343 -13.81993 -13.78226 -13.62644 -13.55041 -13.34128 -13.12830 -12.93305 -12.57593 -12.36224 -12.34765 -12.21671 -11.87309 -11.35668 -11.31367 -11.09682 -10.99421 -10.73385 -10.53131 -10.30882 -10.25987 -10.24290 -10.19034 -9.96717 -9.84395 -9.57133 -9.45844 -9.07023 -8.69024 -8.48253 -8.21498 -6.66953 -5.80562 -3.24021 0.57348 1.32953 1.76228 3.26368 3.29287 3.37047 3.42926 3.44151 3.64645 4.28180 4.48256 4.49335 4.67627 4.78897 4.86711 4.97450 5.07360 5.09973 5.17460 5.21450 5.28888 5.30732 5.36266 5.39560 5.48213 5.58577 5.77937 5.83417 5.84496 5.92264 5.98128 6.01016 6.05646 6.13588 6.30213 6.37011 6.41979 6.44000 6.47177 6.54612 6.58277 6.67350 6.74533 6.79654 6.90822 6.96165 7.34136 7.39499 7.55238 7.63043 7.77991 8.25362 8.44523 9.20220 9.83438 10.40872 11.28027 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.002170 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.500765 B =12897.668977 C =13836.485039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.254 4.254 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.133 4.133 12 C -0.090 4.090 13 C 0.125 3.875 14 N -0.719 5.719 15 C 0.533 3.467 16 O -0.532 6.532 17 C -0.211 4.211 18 C -0.025 4.025 19 C -0.078 4.078 20 C -0.093 4.093 21 C -0.140 4.140 22 C -0.088 4.088 23 C -0.107 4.107 24 C 0.119 3.881 25 O -0.571 6.571 26 C -0.007 4.007 27 C -0.126 4.126 28 C 0.145 3.855 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.085 0.915 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.400 0.600 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.120 0.880 41 H 0.120 0.880 42 H 0.117 0.883 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.379 0.621 46 H 0.113 0.887 47 H 0.059 0.941 48 H 0.046 0.954 49 H 0.016 0.984 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.692 -22.130 10.278 24.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.384 4.384 8 H 0.081 0.919 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.172 4.172 12 C -0.109 4.109 13 C 0.001 3.999 14 N -0.369 5.369 15 C 0.321 3.679 16 O -0.411 6.411 17 C -0.232 4.232 18 C -0.044 4.044 19 C -0.079 4.079 20 C -0.111 4.111 21 C -0.158 4.158 22 C -0.106 4.106 23 C -0.107 4.107 24 C 0.042 3.958 25 O -0.376 6.376 26 C -0.025 4.025 27 C -0.166 4.166 28 C 0.019 3.981 29 H 0.064 0.936 30 H 0.036 0.964 31 H 0.104 0.896 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.235 0.765 38 H 0.151 0.849 39 H 0.153 0.847 40 H 0.138 0.862 41 H 0.139 0.861 42 H 0.135 0.865 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.226 0.774 46 H 0.131 0.869 47 H 0.077 0.923 48 H 0.065 0.935 49 H 0.034 0.966 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.311 -22.360 10.964 25.274 hybrid contribution 0.424 1.423 -0.460 1.554 sum 4.735 -20.938 10.505 23.899 Atomic orbital electron populations 1.70018 1.05274 1.25647 1.53758 1.25071 0.95283 0.98439 1.00756 0.86379 0.78932 0.83360 0.78143 1.20869 1.21624 1.21023 1.19122 0.92379 0.84810 1.42064 0.91874 1.44022 1.36866 1.01771 1.48807 1.20732 0.88819 0.97850 0.87909 1.22173 1.00360 0.94756 0.99943 1.21310 0.98787 0.95298 0.95512 1.21553 1.01412 0.80401 0.96492 1.46106 1.72311 1.08013 1.10482 1.18484 0.77408 0.85139 0.86832 1.90878 1.50497 1.85434 1.14295 1.23043 1.06516 0.93142 1.00478 1.22364 0.91706 0.98403 0.91974 1.18824 0.99201 0.96884 0.92942 1.21163 0.99007 0.98510 0.92467 1.20889 0.99627 0.98706 0.96577 1.21045 0.96625 0.94471 0.98491 1.19362 0.99497 0.98169 0.93655 1.20954 0.80980 0.93830 1.00049 1.86541 1.15666 1.41105 1.94336 1.20903 0.93035 0.92834 0.95727 1.22068 0.97053 0.98687 0.98749 1.20892 0.97542 0.87035 0.92662 0.93569 0.96435 0.89640 0.93113 0.92451 0.91340 0.91861 0.91762 0.76540 0.84878 0.84673 0.86174 0.86150 0.86454 0.92650 0.92901 0.77428 0.86853 0.92254 0.93486 0.96634 0.92897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.00 11.26 55.49 0.62 -25.37 16 2 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 3 Si 0.90 21.53 29.59 -169.99 -5.03 16.51 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.90 9.57 -15.06 -0.14 -7.04 16 8 H 0.06 1.69 7.88 -52.48 -0.41 1.27 16 9 N -0.59 -14.50 2.99 -172.32 -0.51 -15.02 16 10 C 0.17 4.01 5.29 -3.71 -0.02 3.99 16 11 C -0.13 -2.42 5.36 -26.61 -0.14 -2.56 16 12 C -0.09 -1.38 2.19 -90.58 -0.20 -1.58 16 13 C 0.12 1.72 5.06 -4.04 -0.02 1.70 16 14 N -0.72 -8.43 5.27 -61.70 -0.32 -8.75 16 15 C 0.53 6.67 6.79 -12.96 -0.09 6.58 16 16 O -0.53 -8.28 12.03 5.19 0.06 -8.22 16 17 C -0.21 -1.97 9.93 -37.50 -0.37 -2.34 16 18 C -0.02 -0.23 9.81 -37.16 -0.36 -0.59 16 19 C -0.08 -0.91 4.57 -105.06 -0.48 -1.39 16 20 C -0.09 -0.97 9.80 -39.11 -0.38 -1.36 16 21 C -0.14 -1.44 10.03 -39.65 -0.40 -1.84 16 22 C -0.09 -1.00 9.69 -39.46 -0.38 -1.38 16 23 C -0.11 -1.34 5.50 -104.69 -0.58 -1.92 16 24 C 0.12 1.29 7.16 36.01 0.26 1.55 16 25 O -0.57 -6.04 13.64 -35.23 -0.48 -6.52 16 26 C -0.01 -0.09 6.19 -39.11 -0.24 -0.33 16 27 C -0.13 -2.02 5.25 -26.61 -0.14 -2.16 16 28 C 0.15 2.92 6.52 -3.71 -0.02 2.89 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.09 2.24 6.14 -51.93 -0.32 1.92 16 32 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 36 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.40 3.86 7.63 -40.82 -0.31 3.55 16 38 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 39 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 42 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 43 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 44 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 45 H 0.38 2.17 9.12 45.56 0.42 2.59 16 46 H 0.11 1.54 6.97 -52.48 -0.37 1.17 16 47 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.05 0.62 7.15 -51.93 -0.37 0.25 16 49 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 50 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 LS Contribution 402.45 15.07 6.06 6.06 Total: -1.00 -33.44 402.45 -10.65 -44.09 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -7.25 Total: 4.99 kcal Atomic # 6 Polarization: -3.97 SS G_CDS: -3.80 Total: -7.77 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.21 Total: -49.14 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: -0.42 Total: -14.73 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.44 -10.65 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493227117.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.772 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds