Wall clock time and date at job start Wed Apr 1 2020 03:27:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99752 * 2 1 4 4 H 1.48499 * 109.47084 * 239.99816 * 3 2 1 5 5 H 1.48494 * 109.47161 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46796 * 120.00533 * 3 2 1 7 7 C 1.38807 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00185 * 163.32598 * 7 2 1 9 9 N 1.36935 * 119.99943 * 343.32262 * 7 2 1 10 10 C 1.46923 * 120.63109 * 330.75711 * 9 7 2 11 11 C 1.53194 * 108.77871 * 233.63446 * 10 9 7 12 12 C 1.53041 * 109.30668 * 305.36304 * 11 10 9 13 13 C 1.53003 * 109.45730 * 181.38578 * 12 11 10 14 14 N 1.46499 * 109.47420 * 174.97246 * 13 12 11 15 15 C 1.34776 * 120.00218 * 179.97438 * 14 13 12 16 16 O 1.21696 * 120.00109 * 0.02562 * 15 14 13 17 17 C 1.46434 * 119.99811 * 180.27382 * 15 14 13 18 18 C 1.34814 * 119.99463 * 172.66498 * 17 15 14 19 19 C 1.47205 * 120.00378 * 350.37548 * 18 17 15 20 20 C 1.39855 * 120.16978 * 136.25223 * 19 18 17 21 21 C 1.37863 * 119.82383 * 180.02562 * 20 19 18 22 22 C 1.38425 * 120.17552 * 359.97438 * 21 20 19 23 23 C 1.38379 * 120.34380 * 0.02562 * 22 21 20 24 24 C 1.50700 * 119.91370 * 180.02562 * 23 22 21 25 25 O 1.42902 * 109.47295 * 89.99828 * 24 23 22 26 26 C 1.37912 * 120.16761 * 359.71417 * 23 22 21 27 27 C 1.53037 * 109.52970 * 61.37611 * 12 11 10 28 28 C 1.46927 * 120.63054 * 150.78149 * 9 7 2 29 29 H 0.97000 * 120.00232 * 359.97438 * 1 2 3 30 30 H 1.08996 * 109.58875 * 113.84435 * 10 9 7 31 31 H 1.09005 * 109.70395 * 353.48967 * 10 9 7 32 32 H 1.08998 * 109.49584 * 185.41463 * 11 10 9 33 33 H 1.08993 * 109.49952 * 65.31525 * 11 10 9 34 34 H 1.09000 * 109.46113 * 301.35484 * 12 11 10 35 35 H 1.09007 * 109.47154 * 54.97087 * 13 12 11 36 36 H 1.08997 * 109.47525 * 294.97577 * 13 12 11 37 37 H 0.97000 * 119.99545 * 0.02562 * 14 13 12 38 38 H 1.07993 * 120.00043 * 352.66799 * 17 15 14 39 39 H 1.07999 * 119.99434 * 170.37324 * 18 17 15 40 40 H 1.07998 * 120.08220 * 359.97438 * 20 19 18 41 41 H 1.08005 * 119.91431 * 180.02562 * 21 20 19 42 42 H 1.08000 * 119.82506 * 180.02562 * 22 21 20 43 43 H 1.09006 * 109.46850 * 209.99897 * 24 23 22 44 44 H 1.09004 * 109.47298 * 329.99301 * 24 23 22 45 45 H 0.96697 * 113.99747 * 180.02562 * 25 24 23 46 46 H 1.08004 * 120.08941 * 180.27870 * 26 23 22 47 47 H 1.08997 * 109.49639 * 58.57535 * 27 12 11 48 48 H 1.09000 * 109.49688 * 178.67213 * 27 12 11 49 49 H 1.08998 * 109.58452 * 246.15135 * 28 9 7 50 50 H 1.08997 * 109.58714 * 6.44091 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7465 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0563 -1.2216 -0.2689 9 7 1.3688 -2.3632 0.3393 10 6 0.2364 -2.3465 1.2752 11 6 0.5176 -3.3396 2.4073 12 6 0.8190 -4.7159 1.8098 13 6 1.0665 -5.7186 2.9387 14 7 1.2362 -7.0592 2.3729 15 6 1.4672 -8.1093 3.1854 16 8 1.5343 -7.9441 4.3892 17 6 1.6428 -9.4483 2.6192 18 6 2.0194 -10.4714 3.4124 19 6 2.4582 -10.2096 4.7929 20 6 2.0110 -11.0232 5.8388 21 6 2.4261 -10.7713 7.1291 22 6 3.2836 -9.7166 7.3907 23 6 3.7305 -8.9070 6.3612 24 6 4.6643 -7.7618 6.6570 25 8 6.0167 -8.2148 6.5684 26 6 3.3285 -9.1495 5.0645 27 6 2.0641 -4.6278 0.9243 28 6 1.8003 -3.6495 -0.2248 29 1 -0.4850 0.8400 0.0004 30 1 -0.6744 -2.6373 0.7520 31 1 0.1163 -1.3452 1.6890 32 1 -0.3553 -3.4080 3.0564 33 1 1.3760 -2.9982 2.9858 34 1 -0.0300 -5.0457 1.2109 35 1 0.2151 -5.7166 3.6195 36 1 1.9677 -5.4374 3.4834 37 1 1.1830 -7.1908 1.4133 38 1 1.4707 -9.6163 1.5664 39 1 1.9990 -11.4830 3.0348 40 1 1.3417 -11.8462 5.6362 41 1 2.0820 -11.3989 7.9379 42 1 3.6055 -9.5245 8.4036 43 1 4.5005 -6.9632 5.9333 44 1 4.4719 -7.3863 7.6620 45 1 6.6739 -7.5285 6.7477 46 1 3.6816 -8.5196 4.2614 47 1 2.9077 -4.2742 1.5170 48 1 2.2920 -5.6131 0.5179 49 1 1.0169 -4.0465 -0.8703 50 1 2.7132 -3.5071 -0.8030 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493227117.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:35 Heat of formation + Delta-G solvation = -43.390398 kcal Electronic energy + Delta-G solvation = -29685.059731 eV Core-core repulsion = 25677.068792 eV Total energy + Delta-G solvation = -4007.990939 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.19124 -40.02990 -39.24774 -37.59977 -36.41172 -34.76178 -34.45670 -32.58722 -32.45716 -31.46356 -30.62323 -28.46716 -26.93505 -26.08875 -24.69054 -23.83048 -22.97264 -22.38304 -21.97850 -20.88186 -20.16617 -18.71062 -18.40575 -18.20571 -17.35905 -17.02402 -16.72711 -16.46114 -16.24561 -15.87694 -15.57786 -15.32211 -15.27437 -14.93655 -14.75850 -14.69266 -14.48908 -14.31664 -13.94703 -13.84327 -13.70795 -13.42708 -13.28484 -13.03644 -12.98601 -12.79193 -12.56412 -12.29238 -12.10336 -12.02195 -11.88520 -11.85862 -11.62789 -11.25989 -11.12018 -11.07139 -10.95666 -10.69551 -10.53599 -10.04706 -9.55037 -9.03534 -8.66008 -7.88130 -5.34150 -0.18510 0.50702 0.98120 1.45474 1.47951 1.54526 2.35042 2.39933 2.50560 2.86299 3.26429 3.54310 3.70684 3.77399 3.83448 3.91947 3.95419 4.03397 4.08570 4.10075 4.20709 4.32372 4.47439 4.51439 4.53037 4.53759 4.57419 4.69098 4.70289 4.73136 4.81364 4.92793 5.01136 5.05515 5.11553 5.13787 5.22153 5.27995 5.29460 5.32785 5.39107 5.50449 5.54562 5.59393 5.65082 5.65306 5.73001 5.77580 6.13138 6.39680 6.67083 6.81814 7.15343 7.35149 7.87352 8.38723 9.17916 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.002170 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.500765 B =12897.668977 C =13836.485039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.050 4.050 3 Si 0.965 3.035 4 H -0.274 1.274 5 H -0.294 1.294 6 H -0.280 1.280 7 C -0.264 4.264 8 H 0.064 0.936 9 N -0.612 5.612 10 C 0.179 3.821 11 C -0.122 4.122 12 C -0.077 4.077 13 C 0.141 3.859 14 N -0.712 5.712 15 C 0.526 3.474 16 O -0.567 6.567 17 C -0.215 4.215 18 C -0.021 4.021 19 C -0.093 4.093 20 C -0.101 4.101 21 C -0.144 4.144 22 C -0.104 4.104 23 C -0.132 4.132 24 C 0.121 3.879 25 O -0.586 6.586 26 C -0.028 4.028 27 C -0.112 4.112 28 C 0.140 3.860 29 H 0.250 0.750 30 H -0.001 1.001 31 H 0.048 0.952 32 H 0.067 0.933 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.052 0.948 37 H 0.413 0.587 38 H 0.169 0.831 39 H 0.174 0.826 40 H 0.148 0.852 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.045 0.955 44 H 0.067 0.933 45 H 0.397 0.603 46 H 0.097 0.903 47 H 0.048 0.952 48 H 0.085 0.915 49 H 0.018 0.982 50 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.102 -24.762 10.310 27.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.246 4.246 3 Si 0.793 3.207 4 H -0.200 1.200 5 H -0.220 1.220 6 H -0.206 1.206 7 C -0.394 4.394 8 H 0.081 0.919 9 N -0.336 5.336 10 C 0.053 3.947 11 C -0.161 4.161 12 C -0.096 4.096 13 C 0.016 3.984 14 N -0.363 5.363 15 C 0.316 3.684 16 O -0.448 6.448 17 C -0.235 4.235 18 C -0.040 4.040 19 C -0.093 4.093 20 C -0.119 4.119 21 C -0.161 4.161 22 C -0.122 4.122 23 C -0.132 4.132 24 C 0.044 3.956 25 O -0.395 6.395 26 C -0.046 4.046 27 C -0.151 4.151 28 C 0.014 3.986 29 H 0.059 0.941 30 H 0.017 0.983 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.067 0.933 34 H 0.094 0.906 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.250 0.750 38 H 0.186 0.814 39 H 0.191 0.809 40 H 0.166 0.834 41 H 0.164 0.836 42 H 0.149 0.851 43 H 0.063 0.937 44 H 0.085 0.915 45 H 0.247 0.753 46 H 0.115 0.885 47 H 0.067 0.933 48 H 0.103 0.897 49 H 0.036 0.964 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.751 -25.017 10.974 27.728 hybrid contribution 0.320 2.198 -0.459 2.268 sum 5.071 -22.819 10.515 25.632 Atomic orbital electron populations 1.70168 1.06627 1.25909 1.55318 1.25810 0.96044 1.01493 1.01218 0.85384 0.77630 0.79380 0.78325 1.20008 1.21997 1.20586 1.19449 0.92646 0.86158 1.41183 0.91871 1.44307 1.36922 1.02699 1.49631 1.20533 0.88034 0.97233 0.88902 1.21973 1.00750 0.95218 0.98205 1.21138 0.98779 0.93908 0.95810 1.21171 1.00624 0.81141 0.95425 1.45966 1.72188 1.07002 1.11160 1.19089 0.76525 0.86315 0.86461 1.90876 1.51906 1.86081 1.15953 1.23187 1.07101 0.91059 1.02142 1.22737 0.90521 1.00149 0.90600 1.19204 0.98841 0.96489 0.94810 1.21550 0.99078 0.98992 0.92232 1.21280 0.98842 0.98463 0.97557 1.21315 0.97123 0.94852 0.98921 1.19697 1.00278 0.99068 0.94137 1.20913 0.81047 0.93178 1.00440 1.86489 1.16028 1.42475 1.94462 1.20917 0.94446 0.93722 0.95538 1.21909 0.96790 0.99304 0.97120 1.21079 0.97296 0.86023 0.94166 0.94113 0.98331 0.93334 0.91460 0.93278 0.90554 0.92413 0.92944 0.75031 0.81377 0.80915 0.83444 0.83617 0.85074 0.93693 0.91526 0.75263 0.88488 0.93320 0.89669 0.96395 0.93064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.44 11.26 21.65 0.24 -55.20 16 2 C -0.05 -2.81 4.91 84.86 0.42 -2.39 16 3 Si 0.96 45.00 29.59 68.60 2.03 47.03 16 4 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 5 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 7 C -0.26 -14.55 9.57 84.03 0.80 -13.75 16 8 H 0.06 3.40 7.88 -2.91 -0.02 3.38 16 9 N -0.61 -30.39 2.99 -699.09 -2.09 -32.48 16 10 C 0.18 8.52 5.29 86.36 0.46 8.98 16 11 C -0.12 -4.43 5.36 30.67 0.16 -4.27 16 12 C -0.08 -2.26 2.19 -10.77 -0.02 -2.29 16 13 C 0.14 3.67 5.06 86.38 0.44 4.11 16 14 N -0.71 -15.09 5.27 -467.33 -2.46 -17.55 16 15 C 0.53 12.27 6.79 86.38 0.59 12.85 16 16 O -0.57 -17.38 12.03 -4.34 -0.05 -17.43 16 17 C -0.21 -3.36 9.93 23.62 0.23 -3.12 16 18 C -0.02 -0.32 9.81 23.84 0.23 -0.08 16 19 C -0.09 -2.02 4.57 -20.15 -0.09 -2.12 16 20 C -0.10 -1.89 9.80 22.57 0.22 -1.66 16 21 C -0.14 -2.71 10.03 22.23 0.22 -2.49 16 22 C -0.10 -2.28 9.69 22.35 0.22 -2.06 16 23 C -0.13 -3.34 5.50 -19.91 -0.11 -3.45 16 24 C 0.12 2.68 7.16 71.24 0.51 3.19 16 25 O -0.59 -12.33 13.64 -148.98 -2.03 -14.37 16 26 C -0.03 -0.72 6.19 22.57 0.14 -0.58 16 27 C -0.11 -3.39 5.25 30.67 0.16 -3.23 16 28 C 0.14 5.50 6.52 86.37 0.56 6.06 16 29 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 31 H 0.05 2.65 6.14 -2.38 -0.01 2.64 16 32 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.41 6.57 7.63 -92.71 -0.71 5.87 16 38 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 39 H 0.17 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 43 H 0.04 1.04 8.09 -2.38 -0.02 1.02 16 44 H 0.07 1.23 8.08 -2.38 -0.02 1.21 16 45 H 0.40 4.42 9.12 -74.06 -0.68 3.75 16 46 H 0.10 2.71 6.97 -2.91 -0.02 2.69 16 47 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 48 H 0.08 1.95 7.15 -2.39 -0.02 1.94 16 49 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.05 2.00 7.93 -2.39 -0.02 1.98 16 Total: -1.00 -75.23 402.45 0.35 -74.88 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: -0.44 Total: 21.40 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: 5.14 Total: -6.29 kcal Atomic # 7 Polarization: -100.92 SS G_CDS: -4.31 Total: -105.23 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -2.08 Total: -31.79 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -75.23 0.35 -74.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493227117.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.493 kcal (2) G-P(sol) polarization free energy of solvation -75.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds