Wall clock time and date at job start Wed Apr 1 2020 03:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48505 * 109.46963 * 239.99711 * 3 2 1 5 5 H 1.48495 * 109.47573 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46862 * 120.00104 * 3 2 1 7 7 C 1.38713 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1 9 9 O 1.34786 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.35568 * 117.00358 * 185.05611 * 9 7 2 11 11 C 1.39182 * 119.89512 * 354.44174 * 10 9 7 12 12 C 1.37596 * 120.10030 * 179.97438 * 11 10 9 13 13 C 1.40030 * 119.89516 * 0.02562 * 12 11 10 14 14 C 1.46966 * 120.09794 * 180.02562 * 13 12 11 15 15 C 1.35015 * 119.99859 * 179.97438 * 14 13 12 16 16 C 1.46258 * 120.00185 * 179.72327 * 15 14 13 17 17 O 1.21726 * 119.99604 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00322 * 179.97438 * 16 15 14 19 19 C 1.46495 * 120.00065 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47359 * 179.97438 * 19 18 16 21 21 N 1.46902 * 109.46926 * 60.00173 * 20 19 18 22 22 C 1.52997 * 109.47114 * 300.00366 * 20 19 18 23 23 C 1.52999 * 109.47299 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.47051 * 59.99755 * 23 22 20 25 25 C 1.53005 * 109.47157 * 300.00068 * 24 23 22 26 26 C 1.52996 * 109.47603 * 180.02562 * 20 19 18 27 27 C 1.40020 * 119.80058 * 0.26963 * 13 12 11 28 28 C 1.37600 * 119.89646 * 359.42930 * 27 13 12 29 29 H 0.96997 * 119.99994 * 0.02562 * 1 2 3 30 30 H 1.07995 * 119.94871 * 359.97438 * 11 10 9 31 31 H 1.07996 * 120.05569 * 180.02562 * 12 11 10 32 32 H 1.07994 * 120.00006 * 359.97438 * 14 13 12 33 33 H 1.08007 * 120.00318 * 359.97438 * 15 14 13 34 34 H 0.97004 * 119.99859 * 0.02562 * 18 16 15 35 35 H 1.09002 * 109.47219 * 300.00429 * 19 18 16 36 36 H 1.09003 * 109.46807 * 59.99987 * 19 18 16 37 37 H 1.00904 * 111.00143 * 299.99930 * 21 20 19 38 38 H 1.00898 * 110.99863 * 63.95406 * 21 20 19 39 39 H 1.09000 * 109.47265 * 299.99395 * 22 20 19 40 40 H 1.08999 * 109.47510 * 59.99607 * 22 20 19 41 41 H 1.09003 * 109.47246 * 300.00138 * 23 22 20 42 42 H 1.09002 * 109.47600 * 180.02562 * 23 22 20 43 43 H 1.08998 * 109.47046 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47104 * 60.00516 * 24 23 22 45 45 H 1.08997 * 109.46786 * 300.00451 * 25 24 23 46 46 H 1.09000 * 109.46940 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.47089 * 300.00634 * 26 20 19 48 48 H 1.09003 * 109.46692 * 60.00042 * 26 20 19 49 49 H 1.08001 * 120.04957 * 179.72469 * 27 13 12 50 50 H 1.07995 * 119.95151 * 180.27354 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0087 -1.2013 0.0005 8 1 3.0887 -1.2013 0.0001 9 8 1.3348 -2.3686 0.0005 10 6 2.0690 -3.5032 0.1075 11 6 3.4590 -3.4339 0.0942 12 6 4.2083 -4.5827 0.2030 13 6 3.5703 -5.8231 0.3268 14 6 4.3663 -7.0529 0.4439 15 6 3.7490 -8.2477 0.5637 16 6 4.5410 -9.4723 0.6742 17 8 5.7568 -9.4142 0.6586 18 7 3.9249 -10.6649 0.7943 19 6 4.7182 -11.8915 0.9044 20 6 3.7820 -13.0951 1.0292 21 7 2.9230 -13.1726 -0.1600 22 6 2.9116 -12.9369 2.2775 23 6 1.9749 -14.1401 2.4020 24 6 2.8031 -15.4215 2.5167 25 6 3.6734 -15.5798 1.2683 26 6 4.6105 -14.3761 1.1448 27 6 2.1716 -5.8885 0.3335 28 6 1.4305 -4.7337 0.2304 29 1 -0.4850 0.8400 -0.0004 30 1 3.9502 -2.4769 -0.0018 31 1 5.2869 -4.5280 0.1930 32 1 5.4449 -7.0010 0.4342 33 1 2.6702 -8.2997 0.5739 34 1 2.9560 -10.7112 0.8071 35 1 5.3387 -12.0040 0.0152 36 1 5.3553 -11.8341 1.7870 37 1 2.3651 -12.3376 -0.2582 38 1 3.4700 -13.3418 -0.9908 39 1 3.5489 -12.8794 3.1599 40 1 2.3213 -12.0242 2.1956 41 1 1.3375 -14.1973 1.5196 42 1 1.3544 -14.0272 3.2911 43 1 2.1357 -16.2788 2.6050 44 1 3.4404 -15.3644 3.3992 45 1 3.0360 -15.6368 0.3860 46 1 4.2637 -16.4924 1.3503 47 1 5.2309 -14.4890 0.2557 48 1 5.2475 -14.3183 2.0274 49 1 1.6753 -6.8434 0.4244 50 1 0.3517 -4.7828 0.2400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493338783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:29 Heat of formation + Delta-G solvation = -45.121521 kcal Electronic energy + Delta-G solvation = -28412.646332 eV Core-core repulsion = 24404.580325 eV Total energy + Delta-G solvation = -4008.066007 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.32866 -39.27930 -38.89686 -36.92141 -35.21289 -33.25034 -32.86556 -32.29811 -31.12652 -30.45790 -29.45976 -28.32970 -26.28886 -25.57251 -23.39708 -22.88230 -22.17710 -21.35202 -20.71104 -19.54646 -19.29397 -18.22435 -17.19889 -17.16143 -16.34623 -15.94508 -15.72874 -15.27704 -14.96335 -14.81093 -14.60079 -14.42028 -14.32326 -13.90693 -13.85508 -13.82019 -13.42205 -13.13325 -13.04572 -12.66425 -12.55618 -12.48204 -12.22877 -12.12189 -11.95365 -11.78515 -11.74674 -11.37077 -11.12468 -11.10927 -10.92260 -10.72896 -10.58258 -10.56237 -10.38865 -9.85291 -9.63916 -9.52505 -9.23060 -9.07846 -8.87149 -8.40908 -7.14315 -6.67087 -4.22059 1.03353 2.11104 2.52598 3.02722 3.04345 3.06821 3.11666 3.53618 3.80652 4.04119 4.25377 4.31103 4.44060 4.48503 4.79879 4.86811 4.90093 4.91847 4.99325 5.01891 5.09843 5.21279 5.23321 5.24960 5.32687 5.44756 5.50121 5.50935 5.59578 5.61493 5.63985 5.65618 5.84990 5.91385 5.92963 5.93491 5.98620 6.09001 6.19738 6.25801 6.43534 6.45077 6.57698 6.73603 6.76409 6.89144 7.01305 7.10269 7.20992 7.25253 7.45284 7.61345 7.77985 8.27930 8.77443 9.44015 10.49325 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.001521 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.332678 B =18398.862318 C =19043.990284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.267 1.267 7 C -0.394 4.394 8 H 0.097 0.903 9 O -0.161 6.161 10 C 0.167 3.833 11 C -0.242 4.242 12 C -0.034 4.034 13 C -0.200 4.200 14 C 0.041 3.959 15 C -0.286 4.286 16 C 0.556 3.444 17 O -0.558 6.558 18 N -0.734 5.734 19 C 0.091 3.909 20 C 0.111 3.889 21 N -0.830 5.830 22 C -0.106 4.106 23 C -0.111 4.111 24 C -0.117 4.117 25 C -0.110 4.110 26 C -0.104 4.104 27 C -0.042 4.042 28 C -0.200 4.200 29 H 0.275 0.725 30 H 0.131 0.869 31 H 0.114 0.886 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.397 0.603 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.339 0.661 38 H 0.342 0.658 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.054 0.946 47 H 0.062 0.938 48 H 0.067 0.933 49 H 0.118 0.882 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.139 -25.578 2.460 26.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.192 1.192 5 H -0.201 1.201 6 H -0.192 1.192 7 C -0.469 4.469 8 H 0.114 0.886 9 O -0.062 6.062 10 C 0.110 3.890 11 C -0.262 4.262 12 C -0.053 4.053 13 C -0.201 4.201 14 C 0.021 3.979 15 C -0.307 4.307 16 C 0.348 3.652 17 O -0.439 6.439 18 N -0.387 5.387 19 C -0.035 4.035 20 C 0.017 3.983 21 N -0.361 5.361 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.155 4.155 25 C -0.147 4.147 26 C -0.142 4.142 27 C -0.061 4.061 28 C -0.219 4.219 29 H 0.085 0.915 30 H 0.149 0.851 31 H 0.132 0.868 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.232 0.768 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.094 0.906 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.073 0.927 47 H 0.081 0.919 48 H 0.086 0.914 49 H 0.136 0.864 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.192 -25.926 2.785 26.587 hybrid contribution 0.574 1.711 -0.318 1.832 sum 5.767 -24.215 2.466 25.014 Atomic orbital electron populations 1.70003 1.06145 1.28409 1.43823 1.25395 0.95906 0.99152 0.95961 0.85711 0.78773 0.79186 0.79452 1.19239 1.20059 1.19236 1.21436 0.92094 0.80568 1.52849 0.88572 1.83901 1.34981 1.11803 1.75532 1.19615 0.90328 0.87885 0.91141 1.21100 0.93642 0.99136 1.12273 1.20991 0.98590 0.91398 0.94297 1.18457 0.92980 0.92296 1.16410 1.22287 0.99179 0.91028 0.85415 1.22410 0.99685 0.91874 1.16731 1.18433 0.87664 0.83801 0.75325 1.90780 1.14317 1.87379 1.51384 1.45855 1.09981 1.06203 1.76621 1.22120 0.94607 0.84354 1.02396 1.21058 0.91970 0.93247 0.92001 1.58959 1.27878 1.44069 1.05157 1.21549 0.97967 0.98652 0.96202 1.21419 0.97718 0.93828 1.01929 1.21505 0.98416 0.97743 0.97836 1.21407 0.97826 0.96436 0.99064 1.21502 0.97201 0.93493 1.02023 1.20872 0.92632 0.96870 0.95682 1.20149 0.99778 0.90135 1.11821 0.91517 0.85108 0.86819 0.85986 0.85930 0.76804 0.91754 0.91358 0.84745 0.84482 0.91518 0.92049 0.90585 0.92673 0.92333 0.92610 0.90611 0.92688 0.91908 0.91414 0.86446 0.86113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.67 13.67 55.48 0.76 -22.91 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 19.39 29.55 -169.99 -5.02 14.37 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.39 -10.41 9.48 30.91 0.29 -10.12 16 8 H 0.10 2.33 5.18 -52.48 -0.27 2.06 16 9 O -0.16 -4.36 9.74 0.73 0.01 -4.35 16 10 C 0.17 3.81 6.66 -38.88 -0.26 3.55 16 11 C -0.24 -4.98 9.14 -39.47 -0.36 -5.34 16 12 C -0.03 -0.61 9.78 -39.14 -0.38 -0.99 16 13 C -0.20 -3.38 5.87 -105.02 -0.62 -4.00 16 14 C 0.04 0.61 9.45 -37.19 -0.35 0.26 16 15 C -0.29 -3.82 9.41 -37.51 -0.35 -4.17 16 16 C 0.56 7.59 7.74 -13.04 -0.10 7.49 16 17 O -0.56 -9.70 16.23 5.17 0.08 -9.62 16 18 N -0.73 -7.04 5.01 -61.76 -0.31 -7.35 16 19 C 0.09 0.80 4.77 -4.05 -0.02 0.78 16 20 C 0.11 0.71 0.56 -131.60 -0.07 0.63 16 21 N -0.83 -4.78 7.34 0.74 0.01 -4.77 16 22 C -0.11 -0.70 4.71 -26.73 -0.13 -0.83 16 23 C -0.11 -0.71 5.77 -26.73 -0.15 -0.87 16 24 C -0.12 -0.71 5.92 -26.73 -0.16 -0.87 16 25 C -0.11 -0.65 5.77 -26.71 -0.15 -0.81 16 26 C -0.10 -0.63 4.85 -26.71 -0.13 -0.76 16 27 C -0.04 -0.71 9.40 -39.15 -0.37 -1.08 16 28 C -0.20 -3.95 9.97 -39.47 -0.39 -4.35 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.13 2.66 5.62 -52.49 -0.29 2.36 16 31 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 32 H 0.12 1.84 7.52 -52.49 -0.39 1.45 16 33 H 0.12 1.39 6.07 -52.48 -0.32 1.07 16 34 H 0.40 2.92 6.26 -40.82 -0.26 2.67 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.34 1.86 7.67 -39.29 -0.30 1.56 16 38 H 0.34 1.86 8.98 -39.29 -0.35 1.51 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.41 6.86 -51.93 -0.36 0.05 16 41 H 0.08 0.54 7.60 -51.93 -0.39 0.14 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.08 0.50 7.60 -51.93 -0.39 0.11 16 46 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 49 H 0.12 1.60 6.16 -52.49 -0.32 1.27 16 50 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -30.23 400.85 -9.69 -39.91 By element: Atomic # 1 Polarization: 16.60 SS G_CDS: -7.44 Total: 9.15 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -3.80 Total: -20.47 kcal Atomic # 7 Polarization: -35.49 SS G_CDS: 0.45 Total: -35.04 kcal Atomic # 8 Polarization: -14.06 SS G_CDS: 0.09 Total: -13.97 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -30.23 -9.69 -39.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493338783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.211 kcal (2) G-P(sol) polarization free energy of solvation -30.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds