Wall clock time and date at job start Wed Apr 1 2020 03:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99809 * 2 1 4 4 H 1.48505 * 109.46963 * 239.99711 * 3 2 1 5 5 H 1.48495 * 109.47573 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46862 * 120.00104 * 3 2 1 7 7 C 1.38713 * 119.99837 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99908 * 179.97438 * 7 2 1 9 9 O 1.34786 * 120.00342 * 0.02562 * 7 2 1 10 10 C 1.35568 * 117.00358 * 185.05611 * 9 7 2 11 11 C 1.39182 * 119.89512 * 354.44174 * 10 9 7 12 12 C 1.37596 * 120.10030 * 179.97438 * 11 10 9 13 13 C 1.40030 * 119.89516 * 0.02562 * 12 11 10 14 14 C 1.46966 * 120.09794 * 180.02562 * 13 12 11 15 15 C 1.35015 * 119.99859 * 179.97438 * 14 13 12 16 16 C 1.46258 * 120.00185 * 179.72327 * 15 14 13 17 17 O 1.21726 * 119.99604 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00322 * 179.97438 * 16 15 14 19 19 C 1.46495 * 120.00065 * 179.97438 * 18 16 15 20 20 C 1.52998 * 109.47359 * 179.97438 * 19 18 16 21 21 N 1.46902 * 109.46926 * 60.00173 * 20 19 18 22 22 C 1.52997 * 109.47114 * 300.00366 * 20 19 18 23 23 C 1.52999 * 109.47299 * 179.97438 * 22 20 19 24 24 C 1.53005 * 109.47051 * 59.99755 * 23 22 20 25 25 C 1.53005 * 109.47157 * 300.00068 * 24 23 22 26 26 C 1.52996 * 109.47603 * 180.02562 * 20 19 18 27 27 C 1.40020 * 119.80058 * 0.26963 * 13 12 11 28 28 C 1.37600 * 119.89646 * 359.42930 * 27 13 12 29 29 H 0.96997 * 119.99994 * 0.02562 * 1 2 3 30 30 H 1.07995 * 119.94871 * 359.97438 * 11 10 9 31 31 H 1.07996 * 120.05569 * 180.02562 * 12 11 10 32 32 H 1.07994 * 120.00006 * 359.97438 * 14 13 12 33 33 H 1.08007 * 120.00318 * 359.97438 * 15 14 13 34 34 H 0.97004 * 119.99859 * 0.02562 * 18 16 15 35 35 H 1.09002 * 109.47219 * 300.00429 * 19 18 16 36 36 H 1.09003 * 109.46807 * 59.99987 * 19 18 16 37 37 H 1.00904 * 111.00143 * 299.99930 * 21 20 19 38 38 H 1.00898 * 110.99863 * 63.95406 * 21 20 19 39 39 H 1.09000 * 109.47265 * 299.99395 * 22 20 19 40 40 H 1.08999 * 109.47510 * 59.99607 * 22 20 19 41 41 H 1.09003 * 109.47246 * 300.00138 * 23 22 20 42 42 H 1.09002 * 109.47600 * 180.02562 * 23 22 20 43 43 H 1.08998 * 109.47046 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47104 * 60.00516 * 24 23 22 45 45 H 1.08997 * 109.46786 * 300.00451 * 25 24 23 46 46 H 1.09000 * 109.46940 * 179.97438 * 25 24 23 47 47 H 1.09002 * 109.47089 * 300.00634 * 26 20 19 48 48 H 1.09003 * 109.46692 * 60.00042 * 26 20 19 49 49 H 1.08001 * 120.04957 * 179.72469 * 27 13 12 50 50 H 1.07995 * 119.95151 * 180.27354 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0087 -1.2013 0.0005 8 1 3.0887 -1.2013 0.0001 9 8 1.3348 -2.3686 0.0005 10 6 2.0690 -3.5032 0.1075 11 6 3.4590 -3.4339 0.0942 12 6 4.2083 -4.5827 0.2030 13 6 3.5703 -5.8231 0.3268 14 6 4.3663 -7.0529 0.4439 15 6 3.7490 -8.2477 0.5637 16 6 4.5410 -9.4723 0.6742 17 8 5.7568 -9.4142 0.6586 18 7 3.9249 -10.6649 0.7943 19 6 4.7182 -11.8915 0.9044 20 6 3.7820 -13.0951 1.0292 21 7 2.9230 -13.1726 -0.1600 22 6 2.9116 -12.9369 2.2775 23 6 1.9749 -14.1401 2.4020 24 6 2.8031 -15.4215 2.5167 25 6 3.6734 -15.5798 1.2683 26 6 4.6105 -14.3761 1.1448 27 6 2.1716 -5.8885 0.3335 28 6 1.4305 -4.7337 0.2304 29 1 -0.4850 0.8400 -0.0004 30 1 3.9502 -2.4769 -0.0018 31 1 5.2869 -4.5280 0.1930 32 1 5.4449 -7.0010 0.4342 33 1 2.6702 -8.2997 0.5739 34 1 2.9560 -10.7112 0.8071 35 1 5.3387 -12.0040 0.0152 36 1 5.3553 -11.8341 1.7870 37 1 2.3651 -12.3376 -0.2582 38 1 3.4700 -13.3418 -0.9908 39 1 3.5489 -12.8794 3.1599 40 1 2.3213 -12.0242 2.1956 41 1 1.3375 -14.1973 1.5196 42 1 1.3544 -14.0272 3.2911 43 1 2.1357 -16.2788 2.6050 44 1 3.4404 -15.3644 3.3992 45 1 3.0360 -15.6368 0.3860 46 1 4.2637 -16.4924 1.3503 47 1 5.2309 -14.4890 0.2557 48 1 5.2475 -14.3183 2.0274 49 1 1.6753 -6.8434 0.4244 50 1 0.3517 -4.7828 0.2400 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493338783.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:27:28 Heat of formation + Delta-G solvation = -64.035251 kcal Electronic energy + Delta-G solvation = -28413.466493 eV Core-core repulsion = 24404.580325 eV Total energy + Delta-G solvation = -4008.886167 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.17106 -40.81436 -39.84388 -38.49392 -36.01245 -34.74804 -34.03455 -33.53767 -31.97591 -31.63461 -30.24552 -29.51131 -27.61189 -26.89355 -24.49805 -23.75827 -23.50781 -22.21189 -21.73374 -20.74628 -19.96057 -19.73691 -18.85778 -18.34488 -17.18675 -16.69673 -16.53676 -16.43524 -16.27980 -16.00516 -15.90460 -15.61971 -15.47547 -15.15058 -14.89342 -14.67924 -14.56423 -14.34977 -14.12246 -13.94246 -13.60243 -13.32042 -13.23971 -13.10085 -12.97917 -12.75160 -12.70166 -12.66842 -12.58244 -12.24229 -12.14805 -11.88019 -11.41706 -11.22580 -11.15431 -11.11909 -11.00102 -10.85910 -10.59443 -10.13872 -9.90060 -9.60111 -8.69174 -8.52396 -6.18751 -0.26477 0.57816 1.12102 1.35653 1.46956 1.51339 2.15192 2.20155 2.34231 2.85847 3.17089 3.41869 3.50172 3.69565 3.71580 3.82144 3.92038 3.93637 4.07699 4.25879 4.27315 4.32919 4.35712 4.43149 4.46975 4.58911 4.62597 4.64685 4.70568 4.75994 4.78687 4.93733 5.00475 5.01980 5.10916 5.14808 5.18581 5.25803 5.30921 5.34335 5.40773 5.43198 5.43529 5.45977 5.57556 5.63197 5.70421 5.79958 5.96702 6.09681 6.23290 6.52168 6.56596 6.91779 7.23323 7.68515 8.69272 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.029271 B = 0.001521 C = 0.001470 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.332678 B =18398.862318 C =19043.990284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.017 4.017 3 Si 1.018 2.982 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.258 1.258 7 C -0.419 4.419 8 H 0.105 0.895 9 O -0.219 6.219 10 C 0.130 3.870 11 C -0.249 4.249 12 C -0.041 4.041 13 C -0.171 4.171 14 C 0.017 3.983 15 C -0.247 4.247 16 C 0.550 3.450 17 O -0.595 6.595 18 N -0.712 5.712 19 C 0.093 3.907 20 C 0.123 3.877 21 N -0.828 5.828 22 C -0.106 4.106 23 C -0.108 4.108 24 C -0.118 4.118 25 C -0.106 4.106 26 C -0.105 4.105 27 C -0.037 4.037 28 C -0.207 4.207 29 H 0.275 0.725 30 H 0.125 0.875 31 H 0.143 0.857 32 H 0.123 0.877 33 H 0.153 0.847 34 H 0.412 0.588 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.343 0.657 38 H 0.346 0.654 39 H 0.062 0.938 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.070 0.930 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.067 0.933 49 H 0.161 0.839 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.407 -28.824 2.740 29.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.181 1.181 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.123 0.877 9 O -0.124 6.124 10 C 0.077 3.923 11 C -0.269 4.269 12 C -0.059 4.059 13 C -0.172 4.172 14 C -0.003 4.003 15 C -0.268 4.268 16 C 0.341 3.659 17 O -0.478 6.478 18 N -0.364 5.364 19 C -0.033 4.033 20 C 0.029 3.971 21 N -0.359 5.359 22 C -0.144 4.144 23 C -0.146 4.146 24 C -0.156 4.156 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.054 4.054 28 C -0.226 4.226 29 H 0.084 0.916 30 H 0.142 0.858 31 H 0.161 0.839 32 H 0.141 0.859 33 H 0.170 0.830 34 H 0.249 0.751 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.157 0.843 38 H 0.160 0.840 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.075 0.925 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.178 0.822 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 6.467 -29.267 3.066 30.129 hybrid contribution 0.377 2.012 -0.351 2.077 sum 6.845 -27.254 2.714 28.232 Atomic orbital electron populations 1.70141 1.08029 1.29171 1.47588 1.26596 0.96821 1.02736 0.95448 0.84655 0.77458 0.74225 0.79982 1.18114 1.19569 1.18186 1.21862 0.92721 0.81249 1.53607 0.87740 1.83883 1.36224 1.12742 1.79555 1.20200 0.91538 0.88052 0.92465 1.21201 0.93089 1.00121 1.12440 1.21317 1.00073 0.90757 0.93716 1.18775 0.93269 0.92771 1.12412 1.22166 0.99210 0.90677 0.88269 1.22757 1.01090 0.91116 1.11795 1.18553 0.87152 0.84878 0.75301 1.90785 1.16027 1.87982 1.53055 1.45711 1.10862 1.05470 1.74379 1.22208 0.94923 0.84629 1.01567 1.20931 0.91518 0.92272 0.92340 1.58947 1.27655 1.44204 1.05074 1.21559 0.97941 0.98938 0.95996 1.21380 0.97587 0.93821 1.01775 1.21518 0.98466 0.97751 0.97868 1.21366 0.97681 0.96539 0.98749 1.21515 0.97251 0.93338 1.02201 1.21283 0.92584 0.97503 0.94061 1.20427 1.00407 0.90142 1.11623 0.91584 0.85771 0.83884 0.85906 0.82987 0.75054 0.92401 0.92452 0.84345 0.84045 0.91931 0.91751 0.91037 0.92522 0.92041 0.92607 0.91121 0.92180 0.91613 0.91458 0.82171 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.06 13.67 21.62 0.30 -53.77 16 2 C -0.02 -0.93 5.49 84.85 0.47 -0.47 16 3 Si 1.02 41.28 29.55 68.60 2.03 43.31 16 4 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 5 H -0.27 -10.59 7.11 99.48 0.71 -9.88 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.42 -23.48 9.48 67.93 0.64 -22.83 16 8 H 0.11 5.34 5.18 -2.91 -0.02 5.33 16 9 O -0.22 -12.63 9.74 -20.29 -0.20 -12.83 16 10 C 0.13 6.13 6.66 22.72 0.15 6.28 16 11 C -0.25 -10.39 9.14 22.34 0.20 -10.19 16 12 C -0.04 -1.37 9.78 22.55 0.22 -1.15 16 13 C -0.17 -5.24 5.87 -20.12 -0.12 -5.36 16 14 C 0.02 0.44 9.45 23.82 0.23 0.66 16 15 C -0.25 -5.40 9.41 23.61 0.22 -5.17 16 16 C 0.55 12.95 7.74 86.33 0.67 13.62 16 17 O -0.60 -19.13 16.23 -4.43 -0.07 -19.20 16 18 N -0.71 -11.01 5.01 -467.50 -2.34 -13.35 16 19 C 0.09 1.38 4.77 86.38 0.41 1.79 16 20 C 0.12 1.24 0.56 3.52 0.00 1.24 16 21 N -0.83 -7.06 7.34 -151.57 -1.11 -8.17 16 22 C -0.11 -1.11 4.71 30.59 0.14 -0.97 16 23 C -0.11 -1.12 5.77 30.60 0.18 -0.94 16 24 C -0.12 -1.18 5.92 30.60 0.18 -1.00 16 25 C -0.11 -1.03 5.77 30.61 0.18 -0.85 16 26 C -0.10 -1.04 4.85 30.61 0.15 -0.89 16 27 C -0.04 -1.12 9.40 22.55 0.21 -0.91 16 28 C -0.21 -8.13 9.97 22.34 0.22 -7.90 16 29 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 30 H 0.12 5.24 5.62 -2.91 -0.02 5.22 16 31 H 0.14 3.93 8.06 -2.91 -0.02 3.90 16 32 H 0.12 3.31 7.52 -2.91 -0.02 3.29 16 33 H 0.15 2.44 6.07 -2.91 -0.02 2.42 16 34 H 0.41 4.16 6.26 -92.71 -0.58 3.58 16 35 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.34 2.53 7.67 -89.69 -0.69 1.85 16 38 H 0.35 2.76 8.98 -89.70 -0.81 1.96 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 0.63 6.86 -2.39 -0.02 0.61 16 41 H 0.07 0.82 7.60 -2.39 -0.02 0.81 16 42 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 44 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 45 H 0.07 0.78 7.60 -2.39 -0.02 0.76 16 46 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 47 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.16 3.46 6.16 -2.91 -0.02 3.44 16 50 H 0.12 4.68 8.06 -2.91 -0.02 4.66 16 Total: -1.00 -70.90 400.85 1.87 -69.02 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -1.09 Total: 30.02 kcal Atomic # 6 Polarization: -39.39 SS G_CDS: 4.36 Total: -35.03 kcal Atomic # 7 Polarization: -72.14 SS G_CDS: -3.16 Total: -75.29 kcal Atomic # 8 Polarization: -31.76 SS G_CDS: -0.27 Total: -32.03 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 2.03 Total: 43.31 kcal Total: -70.90 1.87 -69.02 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493338783.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.989 kcal (2) G-P(sol) polarization free energy of solvation -70.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds