Wall clock time and date at job start Wed Apr 1 2020 03:29:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00601 * 2 1 4 4 H 1.48501 * 109.47141 * 270.00319 * 3 2 1 5 5 H 1.48503 * 109.46923 * 29.99688 * 3 2 1 6 6 H 1.48493 * 109.47619 * 149.99946 * 3 2 1 7 7 C 1.38727 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99901 * 180.02562 * 7 2 1 9 9 O 1.34780 * 119.99814 * 0.02562 * 7 2 1 10 10 C 1.35573 * 116.99600 * 185.06015 * 9 7 2 11 11 C 1.39175 * 119.90058 * 354.35937 * 10 9 7 12 12 C 1.37601 * 120.10230 * 180.02562 * 11 10 9 13 13 C 1.40019 * 119.89612 * 359.97345 * 12 11 10 14 14 C 1.46961 * 120.10202 * 180.02562 * 13 12 11 15 15 C 1.35022 * 120.00115 * 136.68126 * 14 13 12 16 16 C 1.46255 * 119.99866 * 348.69227 * 15 14 13 17 17 O 1.21715 * 120.00221 * 353.20229 * 16 15 14 18 18 N 1.34778 * 119.99954 * 173.21154 * 16 15 14 19 19 C 1.46494 * 120.00126 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.47002 * 34.99729 * 19 18 16 21 21 C 1.52996 * 109.47267 * 275.00111 * 19 18 16 22 22 C 1.52997 * 109.47182 * 299.99908 * 21 19 18 23 23 C 1.53008 * 109.47076 * 299.99856 * 22 21 19 24 24 C 1.52996 * 109.46998 * 60.00030 * 23 22 21 25 25 C 1.53000 * 109.47395 * 154.99885 * 19 18 16 26 26 H 1.08999 * 109.47689 * 180.02562 * 25 19 18 27 27 C 1.53006 * 109.47055 * 300.00388 * 25 19 18 28 28 N 1.46903 * 109.47029 * 184.99566 * 27 25 19 29 29 C 1.40027 * 119.80111 * 0.28124 * 13 12 11 30 30 C 1.37599 * 119.89254 * 359.44102 * 29 13 12 31 31 H 0.97004 * 119.99370 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.94748 * 0.02562 * 11 10 9 33 33 H 1.07999 * 120.04774 * 179.97438 * 12 11 10 34 34 H 1.07997 * 119.99754 * 316.68956 * 14 13 12 35 35 H 1.08003 * 119.99904 * 168.96346 * 15 14 13 36 36 H 0.97006 * 119.99770 * 359.97438 * 18 16 15 37 37 H 1.09000 * 109.47156 * 59.99934 * 21 19 18 38 38 H 1.09004 * 109.47403 * 180.02562 * 21 19 18 39 39 H 1.08999 * 109.47427 * 59.99997 * 22 21 19 40 40 H 1.09002 * 109.47084 * 180.02562 * 22 21 19 41 41 H 1.08997 * 109.46948 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.47107 * 300.00336 * 23 22 21 43 43 H 1.09004 * 109.47403 * 59.99635 * 24 23 22 44 44 H 1.09000 * 109.47156 * 179.97438 * 24 23 22 45 45 H 1.08991 * 109.46843 * 304.99565 * 27 25 19 46 46 H 1.09004 * 109.46605 * 64.99833 * 27 25 19 47 47 H 1.00896 * 110.99949 * 56.04348 * 28 27 25 48 48 H 1.00893 * 110.99783 * 180.02562 * 28 27 25 49 49 H 1.07994 * 120.05334 * 179.69783 * 29 13 12 50 50 H 1.08004 * 119.94707 * 180.28201 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0086 -1.2015 0.0005 8 1 3.0886 -1.2015 0.0010 9 8 1.3346 -2.3686 0.0005 10 6 2.0689 -3.5033 0.1076 11 6 3.4588 -3.4342 0.0926 12 6 4.2081 -4.5833 0.2005 13 6 3.5700 -5.8233 0.3261 14 6 4.3659 -7.0533 0.4422 15 6 4.0210 -7.9980 1.3431 16 6 3.0187 -7.7017 2.3662 17 8 2.5862 -6.5701 2.4847 18 7 2.5742 -8.6815 3.1778 19 6 1.5707 -8.3845 4.2030 20 1 0.8802 -7.6293 3.8275 21 6 2.2662 -7.8594 5.4605 22 6 3.2354 -8.9194 5.9876 23 6 2.4611 -10.1944 6.3278 24 6 1.7656 -10.7196 5.0703 25 6 0.7963 -9.6595 4.5432 26 1 0.0494 -9.4385 5.3056 27 6 0.1008 -10.1847 3.2856 28 7 -0.7381 -11.3387 3.6357 29 6 2.1713 -5.8884 0.3353 30 6 1.4303 -4.7336 0.2326 31 1 -0.4849 0.8401 -0.0004 32 1 3.9501 -2.4773 -0.0038 33 1 5.2866 -4.5287 0.1883 34 1 5.2266 -7.2015 -0.1931 35 1 4.4885 -8.9711 1.3109 36 1 2.9187 -9.5833 3.0832 37 1 2.8178 -6.9511 5.2181 38 1 1.5195 -7.6389 6.2234 39 1 3.9821 -9.1404 5.2249 40 1 3.7306 -8.5454 6.8837 41 1 3.1515 -10.9494 6.7037 42 1 1.7144 -9.9734 7.0905 43 1 2.5122 -10.9405 4.3075 44 1 1.2143 -11.6281 5.3125 45 1 -0.5223 -9.3983 2.8598 46 1 0.8511 -10.4890 2.5557 47 1 -1.4000 -11.0985 4.3583 48 1 -1.2082 -11.7042 2.8212 49 1 1.6749 -6.8432 0.4270 50 1 0.3514 -4.7824 0.2443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493438053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:00 Heat of formation + Delta-G solvation = -27.197207 kcal Electronic energy + Delta-G solvation = -30207.938906 eV Core-core repulsion = 26200.650156 eV Total energy + Delta-G solvation = -4007.288750 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.41594 -39.06426 -38.23441 -36.36005 -34.87985 -33.56662 -33.01713 -32.11232 -30.52429 -30.10183 -30.00152 -27.86190 -25.44614 -24.84779 -23.61645 -22.42111 -21.78813 -21.33965 -21.07015 -19.41975 -19.08573 -17.91858 -17.30388 -16.63756 -16.24510 -15.80840 -15.41503 -14.92370 -14.65938 -14.63723 -14.48608 -14.29421 -14.25852 -13.89522 -13.58860 -13.43425 -13.37177 -12.98645 -12.82556 -12.58740 -12.31762 -12.24036 -12.16423 -12.07573 -11.91650 -11.68119 -11.34845 -11.16055 -10.99692 -10.72634 -10.66191 -10.60363 -10.49229 -10.40091 -10.20215 -9.45460 -9.37482 -9.13493 -8.99968 -8.85177 -8.67988 -7.89391 -6.84131 -6.44692 -4.00367 1.28189 2.44407 2.72816 3.14196 3.15726 3.20004 3.40560 3.69185 3.98166 4.13650 4.44227 4.56637 4.65127 4.71519 4.88689 5.05525 5.10357 5.11214 5.13607 5.24332 5.26434 5.28830 5.37241 5.39569 5.47562 5.52413 5.63443 5.65165 5.71672 5.75463 5.86662 5.92402 5.97185 5.99733 6.07680 6.19519 6.24007 6.27013 6.36380 6.47135 6.62164 6.67756 6.77495 6.81148 7.05497 7.08390 7.14035 7.38200 7.47340 7.52077 7.75325 7.94160 8.02216 8.62188 9.01152 9.73394 10.73283 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002400 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.339688 B =11665.307921 C =11988.756461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.390 4.390 8 H 0.094 0.906 9 O -0.174 6.174 10 C 0.171 3.829 11 C -0.251 4.251 12 C -0.042 4.042 13 C -0.188 4.188 14 C 0.026 3.974 15 C -0.267 4.267 16 C 0.539 3.461 17 O -0.511 6.511 18 N -0.727 5.727 19 C 0.154 3.846 20 H 0.087 0.913 21 C -0.130 4.130 22 C -0.117 4.117 23 C -0.121 4.121 24 C -0.104 4.104 25 C -0.091 4.091 26 H 0.080 0.920 27 C 0.065 3.935 28 N -0.850 5.850 29 C 0.014 3.986 30 C -0.203 4.203 31 H 0.270 0.730 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.393 0.607 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.030 0.970 46 H 0.073 0.927 47 H 0.339 0.661 48 H 0.341 0.659 49 H 0.100 0.900 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.792 -22.533 8.432 24.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.466 4.466 8 H 0.111 0.889 9 O -0.076 6.076 10 C 0.117 3.883 11 C -0.270 4.270 12 C -0.060 4.060 13 C -0.189 4.189 14 C 0.006 3.994 15 C -0.288 4.288 16 C 0.328 3.672 17 O -0.388 6.388 18 N -0.381 5.381 19 C 0.048 3.952 20 H 0.105 0.895 21 C -0.168 4.168 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.142 4.142 25 C -0.110 4.110 26 H 0.098 0.902 27 C -0.066 4.066 28 N -0.379 5.379 29 C -0.005 4.005 30 C -0.223 4.223 31 H 0.080 0.920 32 H 0.143 0.857 33 H 0.123 0.877 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.228 0.772 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.048 0.952 46 H 0.092 0.908 47 H 0.151 0.849 48 H 0.153 0.847 49 H 0.118 0.882 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.703 -21.807 8.722 23.953 hybrid contribution -0.057 0.917 -0.249 0.952 sum 4.646 -20.890 8.473 23.017 Atomic orbital electron populations 1.70026 1.06028 1.27716 1.45750 1.25322 0.95838 0.98894 0.96516 0.85702 0.78978 0.80001 0.78713 1.19842 1.20234 1.19137 1.21393 0.91907 0.80806 1.52463 0.88910 1.83905 1.34755 1.11649 1.77280 1.19518 0.90254 0.87725 0.90840 1.20946 0.93658 0.98769 1.13609 1.20739 0.97861 0.91589 0.95843 1.18280 0.93000 0.92219 1.15353 1.22319 0.93898 0.91381 0.91814 1.22618 1.05220 1.00879 1.00074 1.18476 0.81891 0.84957 0.81834 1.90992 1.56929 1.20425 1.70423 1.46084 1.44015 1.12126 1.35846 1.20816 0.90023 0.96323 0.88001 0.89482 1.21898 0.99166 0.98919 0.96863 1.21494 0.98107 0.95253 1.00626 1.21585 0.99273 0.97208 0.97808 1.21462 0.97669 0.98220 0.96830 1.21435 0.97523 0.94699 0.97370 0.90217 1.21824 0.96459 0.91413 0.96920 1.58741 1.29555 1.34669 1.14962 1.20416 0.92092 0.96110 0.91846 1.19991 0.99229 0.90276 1.12754 0.91984 0.85699 0.87667 0.86218 0.86349 0.77199 0.91060 0.91468 0.91956 0.92348 0.92221 0.92151 0.92497 0.90667 0.95217 0.90832 0.84949 0.84676 0.88182 0.86963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.67 13.67 55.48 0.76 -24.91 16 2 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.88 29.55 -169.99 -5.02 15.86 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 6 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 7 C -0.39 -11.18 9.48 30.91 0.29 -10.89 16 8 H 0.09 2.47 5.18 -52.49 -0.27 2.20 16 9 O -0.17 -5.13 9.74 0.73 0.01 -5.13 16 10 C 0.17 4.39 6.66 -38.89 -0.26 4.13 16 11 C -0.25 -5.76 9.14 -39.47 -0.36 -6.13 16 12 C -0.04 -0.82 9.78 -39.15 -0.38 -1.20 16 13 C -0.19 -3.47 4.54 -105.03 -0.48 -3.95 16 14 C 0.03 0.36 9.80 -37.19 -0.36 -0.01 16 15 C -0.27 -3.34 9.90 -37.51 -0.37 -3.71 16 16 C 0.54 7.70 6.74 -13.04 -0.09 7.62 16 17 O -0.51 -9.73 11.84 5.18 0.06 -9.67 16 18 N -0.73 -7.69 3.61 -55.25 -0.20 -7.89 16 19 C 0.15 1.63 2.23 -67.94 -0.15 1.48 16 20 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 21 C -0.13 -1.38 5.60 -26.73 -0.15 -1.53 16 22 C -0.12 -1.03 5.77 -26.73 -0.15 -1.18 16 23 C -0.12 -0.89 5.92 -26.73 -0.16 -1.05 16 24 C -0.10 -0.76 4.92 -26.73 -0.13 -0.89 16 25 C -0.09 -0.73 2.12 -90.61 -0.19 -0.93 16 26 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 27 C 0.06 0.52 5.94 -3.82 -0.02 0.50 16 28 N -0.85 -5.76 9.08 -10.37 -0.09 -5.86 16 29 C 0.01 0.28 6.59 -39.14 -0.26 0.02 16 30 C -0.20 -4.69 9.97 -39.47 -0.39 -5.08 16 31 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.13 2.85 5.62 -52.49 -0.29 2.55 16 33 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 34 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.12 1.07 8.06 -52.48 -0.42 0.65 16 36 H 0.39 3.27 6.65 -40.82 -0.27 3.00 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.57 7.60 -51.93 -0.39 0.18 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.41 6.51 -51.93 -0.34 0.07 16 44 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 45 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 46 H 0.07 0.62 7.61 -51.93 -0.40 0.23 16 47 H 0.34 2.00 8.99 -39.29 -0.35 1.65 16 48 H 0.34 1.98 9.08 -39.30 -0.36 1.63 16 49 H 0.10 1.82 7.02 -52.49 -0.37 1.45 16 50 H 0.11 2.53 8.06 -52.48 -0.42 2.11 16 LS Contribution 396.55 15.07 5.98 5.98 Total: -1.00 -33.14 396.55 -9.86 -43.00 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -7.63 Total: 10.42 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: -3.72 Total: -21.80 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.46 Total: -38.66 kcal Atomic # 8 Polarization: -14.86 SS G_CDS: 0.07 Total: -14.79 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.14 -9.86 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493438053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.802 kcal (2) G-P(sol) polarization free energy of solvation -33.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds