Wall clock time and date at job start Wed Apr 1 2020 03:28:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86797 * 120.00601 * 2 1 4 4 H 1.48501 * 109.47141 * 270.00319 * 3 2 1 5 5 H 1.48503 * 109.46923 * 29.99688 * 3 2 1 6 6 H 1.48493 * 109.47619 * 149.99946 * 3 2 1 7 7 C 1.38727 * 119.99643 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99901 * 180.02562 * 7 2 1 9 9 O 1.34780 * 119.99814 * 0.02562 * 7 2 1 10 10 C 1.35573 * 116.99600 * 185.06015 * 9 7 2 11 11 C 1.39175 * 119.90058 * 354.35937 * 10 9 7 12 12 C 1.37601 * 120.10230 * 180.02562 * 11 10 9 13 13 C 1.40019 * 119.89612 * 359.97345 * 12 11 10 14 14 C 1.46961 * 120.10202 * 180.02562 * 13 12 11 15 15 C 1.35022 * 120.00115 * 136.68126 * 14 13 12 16 16 C 1.46255 * 119.99866 * 348.69227 * 15 14 13 17 17 O 1.21715 * 120.00221 * 353.20229 * 16 15 14 18 18 N 1.34778 * 119.99954 * 173.21154 * 16 15 14 19 19 C 1.46494 * 120.00126 * 179.97438 * 18 16 15 20 20 H 1.09002 * 109.47002 * 34.99729 * 19 18 16 21 21 C 1.52996 * 109.47267 * 275.00111 * 19 18 16 22 22 C 1.52997 * 109.47182 * 299.99908 * 21 19 18 23 23 C 1.53008 * 109.47076 * 299.99856 * 22 21 19 24 24 C 1.52996 * 109.46998 * 60.00030 * 23 22 21 25 25 C 1.53000 * 109.47395 * 154.99885 * 19 18 16 26 26 H 1.08999 * 109.47689 * 180.02562 * 25 19 18 27 27 C 1.53006 * 109.47055 * 300.00388 * 25 19 18 28 28 N 1.46903 * 109.47029 * 184.99566 * 27 25 19 29 29 C 1.40027 * 119.80111 * 0.28124 * 13 12 11 30 30 C 1.37599 * 119.89254 * 359.44102 * 29 13 12 31 31 H 0.97004 * 119.99370 * 0.02562 * 1 2 3 32 32 H 1.08000 * 119.94748 * 0.02562 * 11 10 9 33 33 H 1.07999 * 120.04774 * 179.97438 * 12 11 10 34 34 H 1.07997 * 119.99754 * 316.68956 * 14 13 12 35 35 H 1.08003 * 119.99904 * 168.96346 * 15 14 13 36 36 H 0.97006 * 119.99770 * 359.97438 * 18 16 15 37 37 H 1.09000 * 109.47156 * 59.99934 * 21 19 18 38 38 H 1.09004 * 109.47403 * 180.02562 * 21 19 18 39 39 H 1.08999 * 109.47427 * 59.99997 * 22 21 19 40 40 H 1.09002 * 109.47084 * 180.02562 * 22 21 19 41 41 H 1.08997 * 109.46948 * 180.02562 * 23 22 21 42 42 H 1.08999 * 109.47107 * 300.00336 * 23 22 21 43 43 H 1.09004 * 109.47403 * 59.99635 * 24 23 22 44 44 H 1.09000 * 109.47156 * 179.97438 * 24 23 22 45 45 H 1.08991 * 109.46843 * 304.99565 * 27 25 19 46 46 H 1.09004 * 109.46605 * 64.99833 * 27 25 19 47 47 H 1.00896 * 110.99949 * 56.04348 * 28 27 25 48 48 H 1.00893 * 110.99783 * 180.02562 * 28 27 25 49 49 H 1.07994 * 120.05334 * 179.69783 * 29 13 12 50 50 H 1.08004 * 119.94707 * 180.28201 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0086 -1.2015 0.0005 8 1 3.0886 -1.2015 0.0010 9 8 1.3346 -2.3686 0.0005 10 6 2.0689 -3.5033 0.1076 11 6 3.4588 -3.4342 0.0926 12 6 4.2081 -4.5833 0.2005 13 6 3.5700 -5.8233 0.3261 14 6 4.3659 -7.0533 0.4422 15 6 4.0210 -7.9980 1.3431 16 6 3.0187 -7.7017 2.3662 17 8 2.5862 -6.5701 2.4847 18 7 2.5742 -8.6815 3.1778 19 6 1.5707 -8.3845 4.2030 20 1 0.8802 -7.6293 3.8275 21 6 2.2662 -7.8594 5.4605 22 6 3.2354 -8.9194 5.9876 23 6 2.4611 -10.1944 6.3278 24 6 1.7656 -10.7196 5.0703 25 6 0.7963 -9.6595 4.5432 26 1 0.0494 -9.4385 5.3056 27 6 0.1008 -10.1847 3.2856 28 7 -0.7381 -11.3387 3.6357 29 6 2.1713 -5.8884 0.3353 30 6 1.4303 -4.7336 0.2326 31 1 -0.4849 0.8401 -0.0004 32 1 3.9501 -2.4773 -0.0038 33 1 5.2866 -4.5287 0.1883 34 1 5.2266 -7.2015 -0.1931 35 1 4.4885 -8.9711 1.3109 36 1 2.9187 -9.5833 3.0832 37 1 2.8178 -6.9511 5.2181 38 1 1.5195 -7.6389 6.2234 39 1 3.9821 -9.1404 5.2249 40 1 3.7306 -8.5454 6.8837 41 1 3.1515 -10.9494 6.7037 42 1 1.7144 -9.9734 7.0905 43 1 2.5122 -10.9405 4.3075 44 1 1.2143 -11.6281 5.3125 45 1 -0.5223 -9.3983 2.8598 46 1 0.8511 -10.4890 2.5557 47 1 -1.4000 -11.0985 4.3583 48 1 -1.2082 -11.7042 2.8212 49 1 1.6749 -6.8432 0.4270 50 1 0.3514 -4.7824 0.2443 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493438053.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:59 Heat of formation + Delta-G solvation = -49.822001 kcal Electronic energy + Delta-G solvation = -30208.919991 eV Core-core repulsion = 26200.650156 eV Total energy + Delta-G solvation = -4008.269835 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.45808 -40.69267 -39.50352 -38.01763 -35.55652 -34.64427 -34.52980 -33.90045 -31.82467 -31.23308 -30.94047 -29.36841 -27.42932 -25.60035 -24.79328 -23.59995 -23.27188 -22.55413 -21.99974 -20.64367 -19.99587 -19.77605 -18.91205 -18.13838 -17.02571 -16.76834 -16.39179 -16.37127 -16.21369 -15.88384 -15.63221 -15.46155 -15.34948 -15.24480 -14.88657 -14.70437 -14.62103 -14.46561 -14.17443 -13.83621 -13.60884 -13.53910 -13.21308 -13.04144 -12.98216 -12.84461 -12.66026 -12.60821 -12.34961 -12.22644 -12.12999 -11.87638 -11.39503 -11.24702 -11.23587 -10.99040 -10.94089 -10.62348 -10.37187 -9.95219 -9.59960 -9.52880 -8.55258 -8.49265 -6.16731 0.01145 0.71413 1.13745 1.32320 1.44523 1.51012 2.16186 2.41187 2.53682 2.86407 3.20381 3.44545 3.52085 3.74457 3.82918 3.96354 4.01850 4.08043 4.14986 4.16385 4.18709 4.32588 4.40585 4.50732 4.54474 4.56633 4.60234 4.68290 4.68508 4.74962 4.76690 4.94846 5.01796 5.05175 5.09414 5.15267 5.23744 5.25911 5.27672 5.28549 5.35535 5.46921 5.50580 5.54257 5.67245 5.70285 5.72374 5.85618 6.01645 6.19634 6.24976 6.57892 6.77290 6.94451 7.52058 7.76852 8.73805 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.014959 B = 0.002400 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.339688 B =11665.307921 C =11988.756461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.024 4.024 3 Si 1.022 2.978 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.254 1.254 7 C -0.415 4.415 8 H 0.102 0.898 9 O -0.232 6.232 10 C 0.127 3.873 11 C -0.259 4.259 12 C -0.049 4.049 13 C -0.158 4.158 14 C 0.003 3.997 15 C -0.230 4.230 16 C 0.526 3.474 17 O -0.567 6.567 18 N -0.704 5.704 19 C 0.155 3.845 20 H 0.051 0.949 21 C -0.128 4.128 22 C -0.111 4.111 23 C -0.116 4.116 24 C -0.097 4.097 25 C -0.081 4.081 26 H 0.082 0.918 27 C 0.069 3.931 28 N -0.847 5.847 29 C 0.017 3.983 30 C -0.222 4.222 31 H 0.273 0.727 32 H 0.119 0.881 33 H 0.147 0.853 34 H 0.167 0.833 35 H 0.172 0.828 36 H 0.410 0.590 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.009 0.991 46 H 0.075 0.925 47 H 0.344 0.656 48 H 0.348 0.652 49 H 0.118 0.882 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.250 -26.669 9.178 29.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.840 3.160 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.491 4.491 8 H 0.119 0.881 9 O -0.138 6.138 10 C 0.076 3.924 11 C -0.278 4.278 12 C -0.066 4.066 13 C -0.159 4.159 14 C -0.017 4.017 15 C -0.251 4.251 16 C 0.317 3.683 17 O -0.447 6.447 18 N -0.357 5.357 19 C 0.049 3.951 20 H 0.069 0.931 21 C -0.167 4.167 22 C -0.149 4.149 23 C -0.154 4.154 24 C -0.134 4.134 25 C -0.100 4.100 26 H 0.100 0.900 27 C -0.062 4.062 28 N -0.377 5.377 29 C -0.001 4.001 30 C -0.241 4.241 31 H 0.082 0.918 32 H 0.137 0.863 33 H 0.165 0.835 34 H 0.185 0.815 35 H 0.189 0.811 36 H 0.248 0.752 37 H 0.054 0.946 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.098 0.902 45 H 0.028 0.972 46 H 0.093 0.907 47 H 0.157 0.843 48 H 0.161 0.839 49 H 0.136 0.864 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.194 -26.066 9.482 28.922 hybrid contribution -1.042 1.657 -0.318 1.984 sum 7.151 -24.408 9.164 27.035 Atomic orbital electron populations 1.70179 1.08161 1.28877 1.48745 1.26677 0.96892 1.02862 0.95724 0.84555 0.77726 0.74250 0.79446 1.18388 1.19462 1.17734 1.21886 0.92592 0.81415 1.53241 0.88066 1.83874 1.36292 1.12743 1.80885 1.19996 0.91705 0.87521 0.93152 1.21082 0.92797 1.00099 1.13848 1.21178 0.99781 0.90657 0.95032 1.18861 0.92757 0.94194 1.10052 1.22552 0.95393 0.89287 0.94446 1.23085 1.02384 1.02178 0.97444 1.19069 0.82071 0.84635 0.82572 1.91003 1.58982 1.22851 1.71908 1.45906 1.42922 1.12296 1.34620 1.20760 0.89643 0.96916 0.87734 0.93067 1.21849 0.99459 0.98305 0.97045 1.21456 0.97600 0.95213 1.00621 1.21557 0.99400 0.96552 0.97869 1.21420 0.97434 0.97645 0.96946 1.21342 0.97545 0.93609 0.97533 0.90006 1.21729 0.96453 0.91321 0.96706 1.58737 1.29843 1.33626 1.15475 1.20637 0.93158 0.95480 0.90859 1.20167 0.99134 0.91025 1.13782 0.91763 0.86310 0.83524 0.81525 0.81080 0.75157 0.94555 0.91106 0.91854 0.92123 0.90713 0.92006 0.91672 0.90161 0.97238 0.90662 0.84321 0.83905 0.86389 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.94 13.67 21.62 0.30 -58.65 16 2 C -0.02 -1.44 5.49 84.86 0.47 -0.98 16 3 Si 1.02 44.63 29.55 68.60 2.03 46.66 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 6 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 7 C -0.42 -25.61 9.48 67.94 0.64 -24.97 16 8 H 0.10 5.74 5.18 -2.91 -0.02 5.73 16 9 O -0.23 -15.00 9.74 -20.29 -0.20 -15.20 16 10 C 0.13 7.00 6.66 22.72 0.15 7.16 16 11 C -0.26 -12.38 9.14 22.34 0.20 -12.17 16 12 C -0.05 -1.84 9.78 22.55 0.22 -1.62 16 13 C -0.16 -5.52 4.54 -20.13 -0.09 -5.61 16 14 C 0.00 0.06 9.80 23.82 0.23 0.29 16 15 C -0.23 -4.49 9.90 23.61 0.23 -4.26 16 16 C 0.53 13.71 6.74 86.33 0.58 14.30 16 17 O -0.57 -21.49 11.84 -4.40 -0.05 -21.54 16 18 N -0.70 -13.09 3.61 -446.93 -1.61 -14.70 16 19 C 0.16 3.18 2.23 44.99 0.10 3.28 16 20 H 0.05 1.45 7.58 -2.39 -0.02 1.43 16 21 C -0.13 -2.67 5.60 30.59 0.17 -2.50 16 22 C -0.11 -1.69 5.77 30.60 0.18 -1.51 16 23 C -0.12 -1.32 5.92 30.60 0.18 -1.14 16 24 C -0.10 -1.07 4.92 30.59 0.15 -0.92 16 25 C -0.08 -1.16 2.12 -10.79 -0.02 -1.18 16 26 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 27 C 0.07 1.00 5.94 86.30 0.51 1.51 16 28 N -0.85 -9.59 9.08 -186.71 -1.70 -11.29 16 29 C 0.02 0.68 6.59 22.55 0.15 0.83 16 30 C -0.22 -10.96 9.97 22.34 0.22 -10.73 16 31 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 32 H 0.12 5.68 5.62 -2.91 -0.02 5.67 16 33 H 0.15 4.29 8.06 -2.91 -0.02 4.27 16 34 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 35 H 0.17 1.69 8.06 -2.91 -0.02 1.66 16 36 H 0.41 5.01 6.65 -92.70 -0.62 4.39 16 37 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 0.95 7.60 -2.39 -0.02 0.93 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 41 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 0.63 6.51 -2.39 -0.02 0.61 16 44 H 0.08 0.90 7.75 -2.39 -0.02 0.88 16 45 H 0.01 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.07 1.06 7.61 -2.38 -0.02 1.04 16 47 H 0.34 3.39 8.99 -89.70 -0.81 2.58 16 48 H 0.35 3.31 9.08 -89.70 -0.81 2.50 16 49 H 0.12 4.22 7.02 -2.91 -0.02 4.20 16 50 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -82.52 396.55 1.79 -80.73 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -1.26 Total: 34.21 kcal Atomic # 6 Polarization: -44.50 SS G_CDS: 4.29 Total: -40.22 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -3.01 Total: -84.64 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -0.25 Total: -36.74 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -82.52 1.79 -80.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493438053.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.906 kcal (2) G-P(sol) polarization free energy of solvation -82.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds