Wall clock time and date at job start Wed Apr 1 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00153 * 2 1 4 4 H 1.48502 * 109.47306 * 240.00349 * 3 2 1 5 5 H 1.48501 * 109.46833 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46866 * 120.00024 * 3 2 1 7 7 C 1.38717 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99441 * 180.02562 * 7 2 1 9 9 O 1.34783 * 120.00204 * 359.97438 * 7 2 1 10 10 C 1.35572 * 116.99813 * 185.06421 * 9 7 2 11 11 C 1.39176 * 119.89873 * 354.36482 * 10 9 7 12 12 C 1.37605 * 120.10041 * 179.97438 * 11 10 9 13 13 C 1.40024 * 119.89626 * 0.02562 * 12 11 10 14 14 C 1.46959 * 120.09990 * 179.97438 * 13 12 11 15 15 C 1.35023 * 120.00033 * 136.68466 * 14 13 12 16 16 C 1.46258 * 119.99980 * 348.67756 * 15 14 13 17 17 O 1.21722 * 119.99800 * 353.22088 * 16 15 14 18 18 N 1.34773 * 120.00019 * 173.21507 * 16 15 14 19 19 C 1.46500 * 119.99888 * 180.02562 * 18 16 15 20 20 H 1.08994 * 109.46934 * 35.00447 * 19 18 16 21 21 C 1.52999 * 109.46886 * 274.99838 * 19 18 16 22 22 N 1.46902 * 109.47200 * 55.00613 * 21 19 18 23 23 C 1.53004 * 109.46990 * 155.00243 * 19 18 16 24 24 C 1.54269 * 110.03294 * 57.16750 * 23 19 18 25 25 C 1.54887 * 104.19543 * 217.10586 * 24 23 19 26 26 C 1.54892 * 102.75151 * 37.94304 * 25 24 23 27 27 C 1.53878 * 110.03047 * 300.00137 * 23 19 18 28 28 C 1.40026 * 119.79884 * 0.25009 * 13 12 11 29 29 C 1.37595 * 119.89689 * 359.47130 * 28 13 12 30 30 H 0.96996 * 119.99639 * 0.02562 * 1 2 3 31 31 H 1.07996 * 119.95427 * 359.97361 * 11 10 9 32 32 H 1.07997 * 120.05040 * 180.02562 * 12 11 10 33 33 H 1.08001 * 120.00098 * 316.67242 * 14 13 12 34 34 H 1.07999 * 119.99773 * 168.68516 * 15 14 13 35 35 H 0.97005 * 119.99890 * 0.02562 * 18 16 15 36 36 H 1.08999 * 109.47654 * 294.99657 * 21 19 18 37 37 H 1.09001 * 109.46823 * 175.00062 * 21 19 18 38 38 H 1.00896 * 111.00109 * 56.03667 * 22 21 19 39 39 H 1.00894 * 111.00188 * 179.97438 * 22 21 19 40 40 H 1.08994 * 110.01727 * 178.61000 * 23 19 18 41 41 H 1.08999 * 110.48398 * 335.78124 * 24 23 19 42 42 H 1.08995 * 110.48740 * 98.42407 * 24 23 19 43 43 H 1.09000 * 110.76027 * 279.62833 * 25 24 23 44 44 H 1.09006 * 110.75716 * 156.25329 * 25 24 23 45 45 H 1.08993 * 110.48809 * 203.38088 * 26 25 24 46 46 H 1.09001 * 110.59928 * 80.78708 * 26 25 24 47 47 H 1.09001 * 110.02446 * 238.56629 * 27 23 19 48 48 H 1.08997 * 110.03278 * 359.94924 * 27 23 19 49 49 H 1.08006 * 120.05192 * 179.74446 * 28 13 12 50 50 H 1.08002 * 119.95191 * 180.25456 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1028 1.6963 1.2125 7 6 2.0086 -1.2014 -0.0005 8 1 3.0887 -1.2013 -0.0001 9 8 1.3347 -2.3686 -0.0005 10 6 2.0691 -3.5033 0.1056 11 6 3.4590 -3.4341 0.0897 12 6 4.2084 -4.5831 0.1976 13 6 3.5705 -5.8232 0.3230 14 6 4.3665 -7.0532 0.4380 15 6 4.0222 -7.9984 1.3387 16 6 3.0208 -7.7026 2.3627 17 8 2.5882 -6.5711 2.4819 18 7 2.5768 -8.6828 3.1741 19 6 1.5732 -8.3865 4.1995 20 1 0.8823 -7.6317 3.8242 21 6 2.2687 -7.8614 5.4570 22 7 3.1069 -6.7068 5.1071 23 6 0.7996 -9.6620 4.5395 24 6 1.7746 -10.7632 5.0051 25 6 1.1838 -12.0678 4.4152 26 6 0.6658 -11.6121 3.0284 27 6 0.0947 -10.2017 3.2827 28 6 2.1718 -5.8884 0.3327 29 6 1.4307 -4.7337 0.2300 30 1 -0.4849 0.8400 -0.0004 31 1 3.9502 -2.4772 -0.0075 32 1 5.2870 -4.5284 0.1857 33 1 5.2267 -7.2012 -0.1980 34 1 4.4865 -8.9729 1.3029 35 1 2.9217 -9.5844 3.0793 36 1 2.8923 -8.6475 5.8826 37 1 1.5184 -7.5576 6.1871 38 1 2.5627 -5.9897 4.6516 39 1 3.5770 -6.3412 5.9215 40 1 0.0667 -9.4570 5.3197 41 1 2.7728 -10.5822 4.6066 42 1 1.8008 -10.8142 6.0935 43 1 0.3636 -12.4342 5.0325 44 1 1.9574 -12.8282 4.3077 45 1 -0.1172 -12.2826 2.6744 46 1 1.4835 -11.5684 2.3090 47 1 -0.9803 -10.2594 3.4535 48 1 0.3029 -9.5545 2.4308 49 1 1.6755 -6.8433 0.4250 50 1 0.3518 -4.7826 0.2415 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493487830.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:16 Heat of formation + Delta-G solvation = -19.728240 kcal Electronic energy + Delta-G solvation = -30415.517068 eV Core-core repulsion = 26408.552197 eV Total energy + Delta-G solvation = -4006.964871 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -40.16880 -38.97488 -38.17686 -36.40467 -35.14218 -33.00233 -32.80225 -32.02953 -30.23596 -30.03867 -29.02137 -27.87246 -25.94621 -25.34354 -23.41668 -22.01720 -21.70975 -21.14445 -20.53950 -19.43688 -19.11906 -17.85568 -17.20421 -16.66797 -16.19833 -15.94742 -15.69596 -14.92110 -14.53556 -14.43894 -14.35382 -14.20808 -13.72186 -13.65156 -13.62584 -13.47085 -13.37899 -12.96737 -12.81966 -12.74107 -12.40629 -12.07613 -12.01627 -11.64464 -11.36781 -11.33530 -11.29291 -11.08973 -10.94972 -10.91804 -10.80885 -10.69109 -10.61397 -10.57196 -10.36930 -9.36149 -9.24484 -9.05386 -8.76629 -8.62451 -8.42099 -7.81541 -6.76861 -6.40910 -3.96740 1.41354 2.50663 2.81149 3.16225 3.19233 3.20219 3.50869 3.90722 4.01162 4.20335 4.32242 4.38851 4.73329 4.77148 5.01240 5.09591 5.13110 5.15989 5.21115 5.25544 5.28191 5.34086 5.37468 5.42607 5.44490 5.45775 5.56137 5.59633 5.68940 5.73267 5.82022 5.83763 5.87182 5.93095 6.02401 6.07118 6.10486 6.32656 6.44543 6.56444 6.69656 6.78057 6.87659 7.11614 7.18472 7.31626 7.44209 7.54367 7.57227 7.64230 7.93918 8.00144 8.06170 8.85424 9.05044 9.78186 10.77175 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.016726 B = 0.002462 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.605446 B =11370.318679 C =11728.593750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.863 5.863 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.389 4.389 8 H 0.092 0.908 9 O -0.175 6.175 10 C 0.170 3.830 11 C -0.250 4.250 12 C -0.043 4.043 13 C -0.180 4.180 14 C 0.018 3.982 15 C -0.258 4.258 16 C 0.553 3.447 17 O -0.507 6.507 18 N -0.719 5.719 19 C 0.155 3.845 20 H 0.085 0.915 21 C 0.052 3.948 22 N -0.840 5.840 23 C -0.098 4.098 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.121 4.121 28 C 0.015 3.985 29 C -0.203 4.203 30 H 0.270 0.730 31 H 0.124 0.876 32 H 0.104 0.896 33 H 0.117 0.883 34 H 0.114 0.886 35 H 0.390 0.610 36 H 0.067 0.933 37 H 0.024 0.976 38 H 0.357 0.643 39 H 0.331 0.669 40 H 0.082 0.918 41 H 0.069 0.931 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.063 0.937 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.100 0.900 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.871 -22.937 8.744 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C -0.166 4.166 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.465 4.465 8 H 0.110 0.890 9 O -0.078 6.078 10 C 0.116 3.884 11 C -0.270 4.270 12 C -0.061 4.061 13 C -0.180 4.180 14 C -0.002 4.002 15 C -0.279 4.279 16 C 0.343 3.657 17 O -0.383 6.383 18 N -0.372 5.372 19 C 0.049 3.951 20 H 0.103 0.897 21 C -0.080 4.080 22 N -0.372 5.372 23 C -0.118 4.118 24 C -0.160 4.160 25 C -0.163 4.163 26 C -0.162 4.162 27 C -0.159 4.159 28 C -0.004 4.004 29 C -0.223 4.223 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.122 0.878 33 H 0.135 0.865 34 H 0.132 0.868 35 H 0.224 0.776 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.173 0.827 39 H 0.142 0.858 40 H 0.100 0.900 41 H 0.088 0.912 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.118 0.882 50 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 4.482 -22.361 8.339 24.282 hybrid contribution 0.145 0.810 0.864 1.193 sum 4.627 -21.551 9.203 23.886 Atomic orbital electron populations 1.70015 1.05999 1.27735 1.45984 1.25300 0.95819 0.98839 0.96610 0.85788 0.78703 0.79786 0.79202 1.19480 1.20317 1.19503 1.21327 0.91845 0.80860 1.52481 0.89026 1.83906 1.34693 1.11611 1.77598 1.19513 0.90235 0.87716 0.90948 1.20930 0.93651 0.98716 1.13667 1.20731 0.97808 0.91620 0.95965 1.18256 0.92939 0.92148 1.14705 1.22264 0.94094 0.91567 0.92243 1.22630 1.05034 1.00518 0.99758 1.18158 0.81467 0.84799 0.81272 1.90878 1.56851 1.20298 1.70238 1.45824 1.43875 1.11849 1.35662 1.20875 0.90005 0.96150 0.88027 0.89671 1.22195 0.95401 0.94651 0.95795 1.58667 1.35303 1.12278 1.30984 1.22044 0.97243 0.94323 0.98178 1.22469 0.98854 0.94204 1.00431 1.22512 1.00179 0.97127 0.96505 1.22358 1.00406 0.96317 0.97078 1.22188 0.99549 0.96423 0.97719 1.20404 0.92083 0.96044 0.91851 1.19977 0.99150 0.90282 1.12873 0.92004 0.85841 0.87794 0.86488 0.86756 0.77571 0.91482 0.95791 0.82740 0.85783 0.90002 0.91196 0.91609 0.91603 0.91678 0.91853 0.91618 0.91868 0.91003 0.88217 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.81 13.67 55.48 0.76 -25.05 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.99 16 3 Si 0.94 20.97 29.55 -169.99 -5.02 15.95 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 7 C -0.39 -11.19 9.48 30.91 0.29 -10.89 16 8 H 0.09 2.45 5.18 -52.48 -0.27 2.17 16 9 O -0.18 -5.19 9.74 0.73 0.01 -5.19 16 10 C 0.17 4.35 6.66 -38.88 -0.26 4.09 16 11 C -0.25 -5.77 9.14 -39.46 -0.36 -6.13 16 12 C -0.04 -0.85 9.78 -39.14 -0.38 -1.23 16 13 C -0.18 -3.33 4.54 -105.03 -0.48 -3.81 16 14 C 0.02 0.26 9.80 -37.19 -0.36 -0.10 16 15 C -0.26 -3.37 9.90 -37.50 -0.37 -3.74 16 16 C 0.55 7.97 6.05 -13.04 -0.08 7.89 16 17 O -0.51 -9.22 9.61 5.17 0.05 -9.17 16 18 N -0.72 -7.78 4.18 -55.25 -0.23 -8.01 16 19 C 0.16 1.62 1.92 -67.93 -0.13 1.49 16 20 H 0.09 1.13 7.58 -51.93 -0.39 0.74 16 21 C 0.05 0.54 6.36 -3.82 -0.02 0.52 16 22 N -0.84 -10.82 8.04 -10.37 -0.08 -10.91 16 23 C -0.10 -0.77 2.80 -89.50 -0.25 -1.02 16 24 C -0.12 -0.79 4.97 -25.07 -0.12 -0.92 16 25 C -0.13 -0.75 6.91 -24.74 -0.17 -0.92 16 26 C -0.12 -0.83 6.83 -25.07 -0.17 -1.00 16 27 C -0.12 -0.97 6.19 -25.61 -0.16 -1.13 16 28 C 0.01 0.29 6.60 -39.15 -0.26 0.03 16 29 C -0.20 -4.67 9.97 -39.47 -0.39 -5.06 16 30 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.12 2.83 5.62 -52.49 -0.29 2.54 16 32 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 34 H 0.11 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.39 3.42 6.82 -40.82 -0.28 3.15 16 36 H 0.07 0.64 7.13 -51.93 -0.37 0.27 16 37 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 38 H 0.36 5.48 7.49 -39.29 -0.29 5.19 16 39 H 0.33 3.73 9.08 -39.30 -0.36 3.37 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.07 0.48 6.13 -51.93 -0.32 0.16 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.07 0.70 7.38 -51.93 -0.38 0.32 16 49 H 0.10 1.81 7.02 -52.48 -0.37 1.44 16 50 H 0.11 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 394.60 15.07 5.95 5.95 Total: -1.00 -32.57 394.60 -9.89 -42.47 By element: Atomic # 1 Polarization: 22.45 SS G_CDS: -7.54 Total: 14.92 kcal Atomic # 6 Polarization: -17.17 SS G_CDS: -3.78 Total: -20.95 kcal Atomic # 7 Polarization: -44.41 SS G_CDS: 0.44 Total: -43.97 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.06 Total: -14.36 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -32.57 -9.89 -42.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493487830.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.738 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds