Wall clock time and date at job start Wed Apr 1 2020 03:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00124 * 2 1 4 4 H 1.48497 * 109.47198 * 270.00013 * 3 2 1 5 5 H 1.48504 * 109.46987 * 30.00151 * 3 2 1 6 6 H 1.48498 * 109.46817 * 149.99708 * 3 2 1 7 7 C 1.38715 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99933 * 180.02562 * 7 2 1 9 9 O 1.34781 * 120.00342 * 359.97438 * 7 2 1 10 10 C 1.35579 * 117.00320 * 185.05925 * 9 7 2 11 11 C 1.39178 * 119.89553 * 354.44312 * 10 9 7 12 12 C 1.37594 * 120.10071 * 179.70771 * 11 10 9 13 13 C 1.40026 * 119.89660 * 0.27233 * 12 11 10 14 14 C 1.46960 * 120.10267 * 179.97438 * 13 12 11 15 15 C 1.35018 * 120.00380 * 180.02562 * 14 13 12 16 16 C 1.46255 * 120.00031 * 180.02562 * 15 14 13 17 17 O 1.21718 * 120.00227 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99865 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00004 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.46676 * 35.00123 * 19 18 16 21 21 C 1.52994 * 109.46985 * 274.99926 * 19 18 16 22 22 N 1.46894 * 109.47419 * 55.00259 * 21 19 18 23 23 C 1.53001 * 109.46866 * 154.99745 * 19 18 16 24 24 C 1.54267 * 110.03370 * 57.90868 * 23 19 18 25 25 C 1.54958 * 104.16268 * 217.13135 * 24 23 19 26 26 C 1.54888 * 102.77572 * 37.89196 * 25 24 23 27 27 C 1.53870 * 110.03571 * 300.69025 * 23 19 18 28 28 C 1.40025 * 119.79857 * 0.02562 * 13 12 11 29 29 C 1.37597 * 119.89777 * 0.02562 * 28 13 12 30 30 H 0.96993 * 119.99812 * 359.97438 * 1 2 3 31 31 H 1.08001 * 119.94724 * 359.97438 * 11 10 9 32 32 H 1.08002 * 120.05125 * 180.29792 * 12 11 10 33 33 H 1.08003 * 119.99700 * 359.97438 * 14 13 12 34 34 H 1.08003 * 119.99923 * 359.97438 * 15 14 13 35 35 H 0.97004 * 119.99649 * 359.97438 * 18 16 15 36 36 H 1.09004 * 109.46804 * 175.00032 * 21 19 18 37 37 H 1.08997 * 109.47302 * 294.99684 * 21 19 18 38 38 H 1.00899 * 111.00055 * 179.97438 * 22 21 19 39 39 H 1.00906 * 110.99755 * 303.95130 * 22 21 19 40 40 H 1.09000 * 110.01569 * 179.30367 * 23 19 18 41 41 H 1.08998 * 110.48695 * 335.78581 * 24 23 19 42 42 H 1.09010 * 110.48345 * 98.42307 * 24 23 19 43 43 H 1.08996 * 110.72214 * 279.57828 * 25 24 23 44 44 H 1.08999 * 110.76543 * 156.22247 * 25 24 23 45 45 H 1.09000 * 110.48651 * 203.40784 * 26 25 24 46 46 H 1.09002 * 110.60588 * 80.81474 * 26 25 24 47 47 H 1.09001 * 110.03477 * 238.57141 * 27 23 19 48 48 H 1.09002 * 110.03486 * 359.95510 * 27 23 19 49 49 H 1.08000 * 120.05154 * 179.97438 * 28 13 12 50 50 H 1.08004 * 119.94809 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2014 -0.0001 9 8 1.3348 -2.3686 -0.0005 10 6 2.0691 -3.5034 0.1055 11 6 3.4591 -3.4340 0.0911 12 6 4.2085 -4.5824 0.2045 13 6 3.5706 -5.8227 0.3286 14 6 4.3665 -7.0521 0.4494 15 6 3.7494 -8.2471 0.5684 16 6 4.5416 -9.4705 0.6892 17 8 5.7573 -9.4116 0.6819 18 7 3.9255 -10.6633 0.8086 19 6 4.7190 -11.8889 0.9289 20 1 5.6244 -11.6809 1.4992 21 6 5.0986 -12.3897 -0.4660 22 7 5.7836 -11.3183 -1.2013 23 6 3.8973 -12.9597 1.6493 24 6 2.5868 -13.2265 0.8802 25 6 1.5356 -13.4644 1.9935 26 6 1.9513 -12.4430 3.0811 27 6 3.4936 -12.4622 3.0482 28 6 2.1719 -5.8881 0.3362 29 6 1.4306 -4.7346 0.2213 30 1 -0.4849 0.8400 0.0004 31 1 3.9502 -2.4769 -0.0047 32 1 5.2871 -4.5272 0.1981 33 1 5.4453 -6.9999 0.4420 34 1 2.6706 -8.2994 0.5754 35 1 2.9566 -10.7102 0.8148 36 1 5.7622 -13.2497 -0.3751 37 1 4.1973 -12.6816 -1.0050 38 1 6.0452 -11.6247 -2.1264 39 1 5.2135 -10.4868 -1.2432 40 1 4.4752 -13.8801 1.7328 41 1 2.3149 -12.3599 0.2777 42 1 2.6863 -14.1124 0.2528 43 1 1.6016 -14.4833 2.3750 44 1 0.5309 -13.2520 1.6280 45 1 1.5868 -12.7574 4.0590 46 1 1.5769 -11.4489 2.8369 47 1 3.8749 -13.1415 3.8106 48 1 3.8838 -11.4581 3.2144 49 1 1.6756 -6.8426 0.4314 50 1 0.3518 -4.7841 0.2275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493487835.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:27 Heat of formation + Delta-G solvation = -35.606051 kcal Electronic energy + Delta-G solvation = -29031.182635 eV Core-core repulsion = 25023.529250 eV Total energy + Delta-G solvation = -4007.653385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.37221 -39.19677 -38.38757 -36.88107 -35.41578 -33.24488 -32.98185 -32.25823 -30.49570 -30.39658 -29.09865 -28.15781 -26.14535 -25.63598 -23.57637 -22.26790 -22.02843 -21.20467 -20.52893 -19.63150 -19.25890 -18.17152 -17.14013 -17.10740 -16.58767 -16.13633 -15.73308 -15.37146 -14.81762 -14.73463 -14.53340 -14.34835 -14.07371 -13.88097 -13.77812 -13.67932 -13.44215 -13.17932 -13.02407 -12.78202 -12.57901 -12.23342 -11.91876 -11.76223 -11.70302 -11.44576 -11.41941 -11.25450 -11.12588 -11.09873 -10.99541 -10.96300 -10.79660 -10.67304 -10.53728 -9.62809 -9.57743 -9.48939 -9.12604 -8.85260 -8.59939 -8.38053 -7.10694 -6.65043 -4.19958 1.10784 2.13574 2.59403 3.03965 3.05012 3.09708 3.26610 3.63941 3.82376 4.07703 4.22018 4.29905 4.51484 4.58382 4.87855 4.92324 4.95830 4.97906 5.04790 5.09429 5.12737 5.17589 5.27377 5.28900 5.29865 5.36472 5.48477 5.49921 5.53804 5.60403 5.62952 5.67790 5.77235 5.77614 5.92556 5.98701 6.00661 6.01876 6.12978 6.43832 6.48968 6.55219 6.63034 6.79865 6.92395 7.05911 7.13593 7.24255 7.28959 7.35967 7.63179 7.64377 7.80406 8.46767 8.79845 9.46895 10.51646 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.001817 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.845288 B =15408.334945 C =16266.857369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.041 3.959 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.265 1.265 7 C -0.393 4.393 8 H 0.097 0.903 9 O -0.163 6.163 10 C 0.167 3.833 11 C -0.242 4.242 12 C -0.035 4.035 13 C -0.198 4.198 14 C 0.037 3.963 15 C -0.284 4.284 16 C 0.547 3.453 17 O -0.531 6.531 18 N -0.731 5.731 19 C 0.154 3.846 20 H 0.093 0.907 21 C 0.052 3.948 22 N -0.836 5.836 23 C -0.099 4.099 24 C -0.123 4.123 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.121 4.121 28 C -0.044 4.044 29 C -0.200 4.200 30 H 0.274 0.726 31 H 0.131 0.869 32 H 0.114 0.886 33 H 0.123 0.877 34 H 0.120 0.880 35 H 0.396 0.604 36 H 0.074 0.926 37 H 0.025 0.975 38 H 0.333 0.667 39 H 0.343 0.657 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.064 0.936 46 H 0.066 0.934 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.117 0.883 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.301 -24.488 1.980 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.165 4.165 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.189 1.189 7 C -0.468 4.468 8 H 0.115 0.885 9 O -0.064 6.064 10 C 0.110 3.890 11 C -0.261 4.261 12 C -0.054 4.054 13 C -0.199 4.199 14 C 0.017 3.983 15 C -0.305 4.305 16 C 0.338 3.662 17 O -0.409 6.409 18 N -0.385 5.385 19 C 0.049 3.951 20 H 0.111 0.889 21 C -0.080 4.080 22 N -0.368 5.368 23 C -0.119 4.119 24 C -0.161 4.161 25 C -0.163 4.163 26 C -0.163 4.163 27 C -0.159 4.159 28 C -0.062 4.062 29 C -0.219 4.219 30 H 0.084 0.916 31 H 0.149 0.851 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.231 0.769 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.145 0.855 39 H 0.158 0.842 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.135 0.865 50 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.265 -24.227 2.542 24.923 hybrid contribution -0.904 0.672 -0.685 1.318 sum 4.361 -23.555 1.857 24.027 Atomic orbital electron populations 1.70014 1.06133 1.28241 1.44139 1.25396 0.95910 0.99150 0.96044 0.85647 0.79013 0.79534 0.78938 1.19639 1.20057 1.18941 1.21471 0.92098 0.80568 1.52700 0.88547 1.83904 1.34949 1.11788 1.75754 1.19613 0.90329 0.87873 0.91168 1.21103 0.93639 0.99158 1.12238 1.20994 0.98599 0.91406 0.94371 1.18474 0.92946 0.92388 1.16067 1.22275 0.99206 0.90948 0.85883 1.22484 0.99625 0.92190 1.16232 1.18412 0.87965 0.83686 0.76092 1.90854 1.13595 1.86898 1.49505 1.46027 1.09852 1.06023 1.76585 1.20970 0.94793 0.83873 0.95491 0.88877 1.22191 0.96479 0.94674 0.94675 1.58647 1.49268 1.07178 1.21708 1.22067 0.96519 0.98131 0.95154 1.22491 0.94414 1.01511 0.97641 1.22522 0.98584 0.99369 0.95860 1.22374 0.95483 0.99480 0.98980 1.22190 0.95915 1.01921 0.95858 1.20869 0.92684 0.96832 0.95796 1.20143 0.99732 0.90175 1.11860 0.91615 0.85140 0.86812 0.85890 0.86263 0.76896 0.90807 0.95701 0.85517 0.84164 0.89738 0.91448 0.91487 0.91528 0.91528 0.91723 0.91491 0.91812 0.91085 0.86509 0.86194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.85 13.67 55.48 0.76 -23.09 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 4 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 5 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 6 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 7 C -0.39 -10.43 9.48 30.91 0.29 -10.14 16 8 H 0.10 2.35 5.18 -52.48 -0.27 2.08 16 9 O -0.16 -4.42 9.74 0.71 0.01 -4.41 16 10 C 0.17 3.82 6.66 -38.89 -0.26 3.56 16 11 C -0.24 -5.01 9.14 -39.47 -0.36 -5.37 16 12 C -0.04 -0.63 9.78 -39.15 -0.38 -1.01 16 13 C -0.20 -3.34 5.87 -105.03 -0.62 -3.95 16 14 C 0.04 0.55 9.45 -37.19 -0.35 0.19 16 15 C -0.28 -3.74 9.41 -37.51 -0.35 -4.09 16 16 C 0.55 7.18 6.04 -13.04 -0.08 7.10 16 17 O -0.53 -8.79 14.30 5.17 0.07 -8.71 16 18 N -0.73 -7.04 4.00 -55.25 -0.22 -7.27 16 19 C 0.15 1.39 2.00 -67.93 -0.14 1.25 16 20 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 21 C 0.05 0.46 6.41 -3.83 -0.02 0.43 16 22 N -0.84 -9.21 8.57 -10.37 -0.09 -9.30 16 23 C -0.10 -0.66 2.80 -89.50 -0.25 -0.91 16 24 C -0.12 -0.71 4.95 -25.03 -0.12 -0.83 16 25 C -0.13 -0.71 6.91 -24.70 -0.17 -0.88 16 26 C -0.13 -0.80 6.83 -25.07 -0.17 -0.97 16 27 C -0.12 -0.86 6.19 -25.61 -0.16 -1.01 16 28 C -0.04 -0.74 9.40 -39.15 -0.37 -1.10 16 29 C -0.20 -3.98 9.97 -39.47 -0.39 -4.37 16 30 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.12 1.85 7.52 -52.48 -0.39 1.45 16 34 H 0.12 1.37 6.07 -52.48 -0.32 1.05 16 35 H 0.40 3.15 6.87 -40.82 -0.28 2.87 16 36 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.02 0.19 7.08 -51.93 -0.37 -0.17 16 38 H 0.33 3.04 9.08 -39.29 -0.36 2.69 16 39 H 0.34 4.20 6.20 -39.29 -0.24 3.96 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.41 6.15 -51.93 -0.32 0.09 16 42 H 0.07 0.35 8.14 -51.92 -0.42 -0.07 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 48 H 0.07 0.62 7.35 -51.93 -0.38 0.24 16 49 H 0.12 1.61 6.16 -52.49 -0.32 1.28 16 50 H 0.12 2.28 8.06 -52.48 -0.42 1.85 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -30.24 398.35 -9.80 -40.04 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: -7.31 Total: 13.34 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: -4.00 Total: -21.12 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.45 Total: -39.66 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.24 -9.80 -40.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493487835.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.436 kcal (2) G-P(sol) polarization free energy of solvation -30.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds