Wall clock time and date at job start Wed Apr 1 2020 03:29:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00124 * 2 1 4 4 H 1.48497 * 109.47198 * 270.00013 * 3 2 1 5 5 H 1.48504 * 109.46987 * 30.00151 * 3 2 1 6 6 H 1.48498 * 109.46817 * 149.99708 * 3 2 1 7 7 C 1.38715 * 119.99717 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99933 * 180.02562 * 7 2 1 9 9 O 1.34781 * 120.00342 * 359.97438 * 7 2 1 10 10 C 1.35579 * 117.00320 * 185.05925 * 9 7 2 11 11 C 1.39178 * 119.89553 * 354.44312 * 10 9 7 12 12 C 1.37594 * 120.10071 * 179.70771 * 11 10 9 13 13 C 1.40026 * 119.89660 * 0.27233 * 12 11 10 14 14 C 1.46960 * 120.10267 * 179.97438 * 13 12 11 15 15 C 1.35018 * 120.00380 * 180.02562 * 14 13 12 16 16 C 1.46255 * 120.00031 * 180.02562 * 15 14 13 17 17 O 1.21718 * 120.00227 * 359.97438 * 16 15 14 18 18 N 1.34779 * 119.99865 * 179.97438 * 16 15 14 19 19 C 1.46502 * 120.00004 * 179.97438 * 18 16 15 20 20 H 1.09000 * 109.46676 * 35.00123 * 19 18 16 21 21 C 1.52994 * 109.46985 * 274.99926 * 19 18 16 22 22 N 1.46894 * 109.47419 * 55.00259 * 21 19 18 23 23 C 1.53001 * 109.46866 * 154.99745 * 19 18 16 24 24 C 1.54267 * 110.03370 * 57.90868 * 23 19 18 25 25 C 1.54958 * 104.16268 * 217.13135 * 24 23 19 26 26 C 1.54888 * 102.77572 * 37.89196 * 25 24 23 27 27 C 1.53870 * 110.03571 * 300.69025 * 23 19 18 28 28 C 1.40025 * 119.79857 * 0.02562 * 13 12 11 29 29 C 1.37597 * 119.89777 * 0.02562 * 28 13 12 30 30 H 0.96993 * 119.99812 * 359.97438 * 1 2 3 31 31 H 1.08001 * 119.94724 * 359.97438 * 11 10 9 32 32 H 1.08002 * 120.05125 * 180.29792 * 12 11 10 33 33 H 1.08003 * 119.99700 * 359.97438 * 14 13 12 34 34 H 1.08003 * 119.99923 * 359.97438 * 15 14 13 35 35 H 0.97004 * 119.99649 * 359.97438 * 18 16 15 36 36 H 1.09004 * 109.46804 * 175.00032 * 21 19 18 37 37 H 1.08997 * 109.47302 * 294.99684 * 21 19 18 38 38 H 1.00899 * 111.00055 * 179.97438 * 22 21 19 39 39 H 1.00906 * 110.99755 * 303.95130 * 22 21 19 40 40 H 1.09000 * 110.01569 * 179.30367 * 23 19 18 41 41 H 1.08998 * 110.48695 * 335.78581 * 24 23 19 42 42 H 1.09010 * 110.48345 * 98.42307 * 24 23 19 43 43 H 1.08996 * 110.72214 * 279.57828 * 25 24 23 44 44 H 1.08999 * 110.76543 * 156.22247 * 25 24 23 45 45 H 1.09000 * 110.48651 * 203.40784 * 26 25 24 46 46 H 1.09002 * 110.60588 * 80.81474 * 26 25 24 47 47 H 1.09001 * 110.03477 * 238.57141 * 27 23 19 48 48 H 1.09002 * 110.03486 * 359.95510 * 27 23 19 49 49 H 1.08000 * 120.05154 * 179.97438 * 28 13 12 50 50 H 1.08004 * 119.94809 * 180.02562 * 29 28 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0087 -1.2013 -0.0005 8 1 3.0887 -1.2014 -0.0001 9 8 1.3348 -2.3686 -0.0005 10 6 2.0691 -3.5034 0.1055 11 6 3.4591 -3.4340 0.0911 12 6 4.2085 -4.5824 0.2045 13 6 3.5706 -5.8227 0.3286 14 6 4.3665 -7.0521 0.4494 15 6 3.7494 -8.2471 0.5684 16 6 4.5416 -9.4705 0.6892 17 8 5.7573 -9.4116 0.6819 18 7 3.9255 -10.6633 0.8086 19 6 4.7190 -11.8889 0.9289 20 1 5.6244 -11.6809 1.4992 21 6 5.0986 -12.3897 -0.4660 22 7 5.7836 -11.3183 -1.2013 23 6 3.8973 -12.9597 1.6493 24 6 2.5868 -13.2265 0.8802 25 6 1.5356 -13.4644 1.9935 26 6 1.9513 -12.4430 3.0811 27 6 3.4936 -12.4622 3.0482 28 6 2.1719 -5.8881 0.3362 29 6 1.4306 -4.7346 0.2213 30 1 -0.4849 0.8400 0.0004 31 1 3.9502 -2.4769 -0.0047 32 1 5.2871 -4.5272 0.1981 33 1 5.4453 -6.9999 0.4420 34 1 2.6706 -8.2994 0.5754 35 1 2.9566 -10.7102 0.8148 36 1 5.7622 -13.2497 -0.3751 37 1 4.1973 -12.6816 -1.0050 38 1 6.0452 -11.6247 -2.1264 39 1 5.2135 -10.4868 -1.2432 40 1 4.4752 -13.8801 1.7328 41 1 2.3149 -12.3599 0.2777 42 1 2.6863 -14.1124 0.2528 43 1 1.6016 -14.4833 2.3750 44 1 0.5309 -13.2520 1.6280 45 1 1.5868 -12.7574 4.0590 46 1 1.5769 -11.4489 2.8369 47 1 3.8749 -13.1415 3.8106 48 1 3.8838 -11.4581 3.2144 49 1 1.6756 -6.8426 0.4314 50 1 0.3518 -4.7841 0.2275 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493487835.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:29:26 Heat of formation + Delta-G solvation = -54.374459 kcal Electronic energy + Delta-G solvation = -29031.996494 eV Core-core repulsion = 25023.529250 eV Total energy + Delta-G solvation = -4008.467244 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.25863 -40.80189 -39.26348 -38.43449 -36.20262 -34.70001 -34.10803 -33.77869 -31.96272 -31.22527 -29.61395 -29.52582 -27.52246 -26.77107 -24.82694 -23.72764 -22.90138 -22.23932 -21.29273 -20.61308 -20.25927 -19.70273 -18.81986 -18.26416 -17.40984 -16.93947 -16.57415 -16.42684 -16.30190 -15.99782 -15.81072 -15.60968 -15.29264 -15.13427 -14.99797 -14.65470 -14.54884 -14.20627 -14.09483 -13.82912 -13.59647 -13.51829 -13.28939 -13.11696 -12.96889 -12.70394 -12.53535 -12.19287 -12.12952 -11.94528 -11.90002 -11.82896 -11.57891 -11.49288 -11.35756 -11.20901 -11.08869 -10.76526 -10.54497 -10.01836 -9.88672 -9.39690 -8.66222 -8.52070 -6.18096 -0.19949 0.58938 1.18420 1.35672 1.46240 1.52794 2.15313 2.34890 2.47135 2.87469 3.18688 3.42944 3.44262 3.68352 3.78102 3.87475 3.96281 3.96884 4.09233 4.20325 4.30113 4.33766 4.37762 4.46113 4.50521 4.58490 4.66064 4.67168 4.71975 4.75617 4.81977 4.87058 4.95683 5.01486 5.04323 5.11278 5.12545 5.20332 5.29053 5.31975 5.35653 5.36519 5.44638 5.52122 5.59854 5.64428 5.69761 5.83924 5.97707 6.11467 6.27975 6.57335 6.71312 6.92377 7.44641 7.69739 8.70015 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.019955 B = 0.001817 C = 0.001721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.845288 B =15408.334945 C =16266.857369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.019 4.019 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.416 4.416 8 H 0.105 0.895 9 O -0.220 6.220 10 C 0.129 3.871 11 C -0.249 4.249 12 C -0.042 4.042 13 C -0.168 4.168 14 C 0.013 3.987 15 C -0.245 4.245 16 C 0.545 3.455 17 O -0.564 6.564 18 N -0.711 5.711 19 C 0.157 3.843 20 H 0.064 0.936 21 C 0.053 3.947 22 N -0.854 5.854 23 C -0.091 4.091 24 C -0.120 4.120 25 C -0.122 4.122 26 C -0.126 4.126 27 C -0.121 4.121 28 C -0.038 4.038 29 C -0.207 4.207 30 H 0.275 0.725 31 H 0.124 0.876 32 H 0.143 0.857 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.408 0.592 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.342 0.658 39 H 0.335 0.665 40 H 0.096 0.904 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.067 0.933 48 H 0.051 0.949 49 H 0.159 0.841 50 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.341 -28.171 2.107 28.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.218 4.218 3 Si 0.837 3.163 4 H -0.187 1.187 5 H -0.196 1.196 6 H -0.177 1.177 7 C -0.492 4.492 8 H 0.122 0.878 9 O -0.125 6.125 10 C 0.077 3.923 11 C -0.268 4.268 12 C -0.060 4.060 13 C -0.169 4.169 14 C -0.007 4.007 15 C -0.266 4.266 16 C 0.335 3.665 17 O -0.444 6.444 18 N -0.365 5.365 19 C 0.052 3.948 20 H 0.083 0.917 21 C -0.079 4.079 22 N -0.386 5.386 23 C -0.111 4.111 24 C -0.157 4.157 25 C -0.160 4.160 26 C -0.164 4.164 27 C -0.159 4.159 28 C -0.056 4.056 29 C -0.226 4.226 30 H 0.084 0.916 31 H 0.142 0.858 32 H 0.161 0.839 33 H 0.142 0.858 34 H 0.164 0.836 35 H 0.245 0.755 36 H 0.101 0.899 37 H 0.060 0.940 38 H 0.154 0.846 39 H 0.149 0.851 40 H 0.114 0.886 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.086 0.914 48 H 0.070 0.930 49 H 0.176 0.824 50 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.324 -28.012 2.671 28.840 hybrid contribution -1.018 1.129 -0.658 1.656 sum 5.306 -26.883 2.013 27.475 Atomic orbital electron populations 1.70148 1.08019 1.29074 1.47828 1.26609 0.96851 1.02771 0.95566 0.84588 0.77863 0.74501 0.79320 1.18748 1.19556 1.17653 1.21886 0.92692 0.81245 1.53367 0.87768 1.83885 1.36194 1.12724 1.79714 1.20185 0.91522 0.88023 0.92594 1.21199 0.93089 1.00118 1.12401 1.21314 1.00052 0.90773 0.93840 1.18797 0.93213 0.92883 1.11999 1.22134 0.99189 0.90544 0.88836 1.22818 1.00905 0.91578 1.11267 1.18446 0.87462 0.84557 0.76012 1.90860 1.15136 1.87423 1.50974 1.45888 1.10539 1.05415 1.74650 1.20988 0.94064 0.84008 0.95780 0.91729 1.22240 0.97271 0.94304 0.94095 1.58664 1.49715 1.07573 1.22657 1.22029 0.96847 0.97559 0.94634 1.22482 0.93612 1.01977 0.97652 1.22508 0.98747 0.99366 0.95362 1.22381 0.94779 0.99681 0.99547 1.22176 0.96511 1.00887 0.96325 1.21268 0.92664 0.97418 0.94259 1.20415 1.00339 0.90174 1.11644 0.91608 0.85841 0.83923 0.85825 0.83648 0.75453 0.89906 0.94018 0.84559 0.85106 0.88569 0.91511 0.90411 0.90999 0.91007 0.91541 0.91777 0.91399 0.93026 0.82361 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.47 13.67 21.62 0.30 -54.17 16 2 C -0.02 -1.07 5.49 84.85 0.47 -0.60 16 3 Si 1.02 41.65 29.55 68.60 2.03 43.68 16 4 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 7 C -0.42 -23.48 9.48 67.93 0.64 -22.83 16 8 H 0.11 5.38 5.18 -2.91 -0.02 5.37 16 9 O -0.22 -12.76 9.74 -20.36 -0.20 -12.96 16 10 C 0.13 6.14 6.66 22.72 0.15 6.29 16 11 C -0.25 -10.49 9.14 22.34 0.20 -10.28 16 12 C -0.04 -1.42 9.78 22.55 0.22 -1.20 16 13 C -0.17 -5.21 5.87 -20.13 -0.12 -5.32 16 14 C 0.01 0.34 9.45 23.82 0.23 0.56 16 15 C -0.24 -5.41 9.41 23.61 0.22 -5.19 16 16 C 0.54 12.63 6.04 86.33 0.52 13.16 16 17 O -0.56 -17.54 14.30 -4.41 -0.06 -17.60 16 18 N -0.71 -11.45 4.00 -446.92 -1.79 -13.24 16 19 C 0.16 2.43 2.00 44.99 0.09 2.52 16 20 H 0.06 1.43 7.58 -2.39 -0.02 1.41 16 21 C 0.05 0.77 6.41 86.30 0.55 1.32 16 22 N -0.85 -16.95 8.57 -186.74 -1.60 -18.55 16 23 C -0.09 -0.93 2.80 -10.07 -0.03 -0.96 16 24 C -0.12 -0.93 4.95 31.69 0.16 -0.77 16 25 C -0.12 -0.95 6.91 31.91 0.22 -0.73 16 26 C -0.13 -1.25 6.83 31.67 0.22 -1.04 16 27 C -0.12 -1.42 6.19 31.32 0.19 -1.22 16 28 C -0.04 -1.19 9.40 22.55 0.21 -0.98 16 29 C -0.21 -8.21 9.97 22.34 0.22 -7.99 16 30 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 31 H 0.12 5.27 5.62 -2.91 -0.02 5.26 16 32 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 33 H 0.12 3.36 7.52 -2.91 -0.02 3.34 16 34 H 0.15 2.47 6.07 -2.91 -0.02 2.45 16 35 H 0.41 4.83 6.87 -92.71 -0.64 4.19 16 36 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 37 H 0.04 0.49 7.08 -2.39 -0.02 0.47 16 38 H 0.34 5.54 9.08 -89.69 -0.81 4.72 16 39 H 0.33 7.41 6.20 -89.69 -0.56 6.86 16 40 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 0.53 6.15 -2.39 -0.01 0.52 16 42 H 0.08 0.49 8.14 -2.38 -0.02 0.47 16 43 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 46 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.05 0.81 7.35 -2.39 -0.02 0.79 16 49 H 0.16 3.54 6.16 -2.91 -0.02 3.53 16 50 H 0.12 4.71 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -71.46 398.35 2.03 -69.43 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: -1.02 Total: 38.68 kcal Atomic # 6 Polarization: -39.63 SS G_CDS: 4.37 Total: -35.26 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -3.09 Total: -85.96 kcal Atomic # 8 Polarization: -30.30 SS G_CDS: -0.26 Total: -30.56 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -71.46 2.03 -69.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493487835.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.051 kcal (2) G-P(sol) polarization free energy of solvation -71.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds