Wall clock time and date at job start Wed Apr 1 2020 03:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 119.99700 * 2 1 4 4 H 1.48497 * 109.47077 * 269.99909 * 3 2 1 5 5 H 1.48502 * 109.47376 * 30.00254 * 3 2 1 6 6 H 1.48505 * 109.47200 * 150.00002 * 3 2 1 7 7 C 1.38722 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99378 * 179.97438 * 7 2 1 9 9 O 1.34779 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.35569 * 117.00065 * 185.05638 * 9 7 2 11 11 C 1.39180 * 119.89732 * 354.44417 * 10 9 7 12 12 C 1.37594 * 120.09869 * 179.97438 * 11 10 9 13 13 C 1.40020 * 119.90052 * 359.97438 * 12 11 10 14 14 C 1.46964 * 120.09824 * 180.02562 * 13 12 11 15 15 C 1.35024 * 119.99504 * 180.02562 * 14 13 12 16 16 C 1.46261 * 119.99807 * 180.02562 * 15 14 13 17 17 O 1.21722 * 119.99598 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99815 * 179.72880 * 16 15 14 19 19 C 1.46500 * 119.99784 * 180.27468 * 18 16 15 20 20 C 1.53000 * 109.47274 * 179.97438 * 19 18 16 21 21 H 1.08993 * 109.46970 * 54.99607 * 20 19 18 22 22 C 1.53006 * 109.46753 * 294.99997 * 20 19 18 23 23 C 1.53000 * 109.46753 * 180.02562 * 22 20 19 24 24 C 1.52994 * 109.47221 * 59.99922 * 23 22 20 25 25 C 1.52998 * 109.47406 * 299.99915 * 24 23 22 26 26 H 1.09000 * 109.47204 * 300.00344 * 25 24 23 27 27 N 1.46899 * 109.47316 * 180.02562 * 25 24 23 28 28 C 1.52993 * 109.47235 * 175.00315 * 20 19 18 29 29 C 1.40017 * 119.79754 * 0.28060 * 13 12 11 30 30 C 1.37600 * 119.89869 * 359.44353 * 29 13 12 31 31 H 0.97000 * 120.00299 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.94431 * 359.95745 * 11 10 9 33 33 H 1.08007 * 120.04682 * 180.02562 * 12 11 10 34 34 H 1.07990 * 120.00291 * 0.02562 * 14 13 12 35 35 H 1.08000 * 120.00212 * 0.02562 * 15 14 13 36 36 H 0.96999 * 120.00104 * 0.27495 * 18 16 15 37 37 H 1.08999 * 109.47268 * 300.00052 * 19 18 16 38 38 H 1.09000 * 109.47122 * 59.99487 * 19 18 16 39 39 H 1.08992 * 109.47096 * 300.00107 * 22 20 19 40 40 H 1.09001 * 109.47104 * 59.99920 * 22 20 19 41 41 H 1.09007 * 109.47071 * 299.99584 * 23 22 20 42 42 H 1.09006 * 109.46662 * 180.02562 * 23 22 20 43 43 H 1.09001 * 109.46836 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.47220 * 60.00250 * 24 23 22 45 45 H 1.00895 * 110.99945 * 60.00046 * 27 25 24 46 46 H 1.00898 * 110.99910 * 183.95727 * 27 25 24 47 47 H 1.09006 * 109.46891 * 299.99883 * 28 20 19 48 48 H 1.08993 * 109.47719 * 59.99751 * 28 20 19 49 49 H 1.08005 * 120.04938 * 179.72239 * 29 13 12 50 50 H 1.08005 * 119.95294 * 180.25347 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0087 -1.2014 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3348 -2.3686 0.0016 10 6 2.0692 -3.5031 0.1085 11 6 3.4592 -3.4338 0.0941 12 6 4.2085 -4.5826 0.2029 13 6 3.5707 -5.8227 0.3288 14 6 4.3669 -7.0525 0.4458 15 6 3.7496 -8.2473 0.5666 16 6 4.5419 -9.4711 0.6837 17 8 5.7576 -9.4125 0.6717 18 7 3.9258 -10.6632 0.8097 19 6 4.7195 -11.8884 0.9330 20 6 3.7833 -13.0917 1.0623 21 1 3.0908 -13.1052 0.2207 22 6 2.9953 -12.9865 2.3696 23 6 2.0595 -14.1901 2.4992 24 6 2.8839 -15.4789 2.5028 25 6 3.6719 -15.5841 1.1956 26 1 2.9794 -15.5981 0.3540 27 7 4.4630 -16.8219 1.1989 28 6 4.6072 -14.3808 1.0658 29 6 2.1721 -5.8881 0.3374 30 6 1.4308 -4.7335 0.2338 31 1 -0.4850 0.8400 -0.0004 32 1 3.9502 -2.4767 -0.0029 33 1 5.2872 -4.5278 0.1920 34 1 5.4455 -7.0005 0.4353 35 1 2.6709 -8.2993 0.5768 36 1 2.9570 -10.7099 0.8188 37 1 5.3443 -12.0072 0.0479 38 1 5.3521 -11.8240 1.8183 39 1 3.6878 -12.9729 3.2111 40 1 2.4083 -12.0680 2.3672 41 1 1.3669 -14.2041 1.6575 42 1 1.4978 -14.1149 3.4303 43 1 2.2173 -16.3363 2.5956 44 1 3.5764 -15.4649 3.3444 45 1 3.8670 -17.6316 1.2834 46 1 5.0418 -16.8833 0.3747 47 1 5.1686 -14.4557 0.1344 48 1 5.2997 -14.3673 1.9073 49 1 1.6759 -6.8430 0.4298 50 1 0.3519 -4.7825 0.2445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493650887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:32 Heat of formation + Delta-G solvation = -51.011549 kcal Electronic energy + Delta-G solvation = -27890.185371 eV Core-core repulsion = 23881.863953 eV Total energy + Delta-G solvation = -4008.321417 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.98866 -39.24299 -38.89956 -36.90422 -35.43695 -33.52500 -33.19767 -32.31407 -31.62471 -30.43206 -28.65659 -28.24009 -26.25695 -25.54827 -23.12648 -22.72971 -22.16071 -21.26653 -20.73903 -20.15993 -19.28358 -18.16394 -17.13163 -17.06197 -16.20668 -15.83606 -15.70715 -15.44901 -15.32553 -14.86587 -14.78601 -14.47491 -14.38558 -14.23800 -13.87105 -13.79051 -13.35973 -13.03963 -12.97556 -12.77817 -12.60522 -12.42187 -12.10440 -11.98818 -11.93279 -11.75888 -11.71424 -11.44226 -11.12999 -11.08181 -10.98954 -10.85663 -10.68282 -10.54177 -10.49599 -9.77452 -9.60626 -9.49631 -9.19030 -9.11148 -8.84699 -8.38481 -7.11522 -6.65435 -4.20346 1.07987 2.13277 2.56654 3.03701 3.04772 3.09515 3.21969 3.60036 3.82094 3.90958 4.17000 4.22385 4.50922 4.57523 4.68252 4.74852 4.87507 4.92156 4.98491 5.00894 5.04237 5.06835 5.09565 5.18437 5.27697 5.40118 5.51203 5.54472 5.55189 5.62249 5.66051 5.67326 5.72014 5.77001 5.80263 5.83835 6.01097 6.03019 6.11957 6.37075 6.47141 6.50337 6.61140 6.65857 6.79083 6.91788 6.93284 7.12893 7.23563 7.28076 7.56381 7.63744 7.79887 8.36377 8.79399 9.46331 10.51188 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.031773 B = 0.001404 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.041115 B =19938.095663 C =20613.859129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.042 3.958 3 Si 0.945 3.055 4 H -0.271 1.271 5 H -0.275 1.275 6 H -0.265 1.265 7 C -0.394 4.394 8 H 0.097 0.903 9 O -0.163 6.163 10 C 0.166 3.834 11 C -0.242 4.242 12 C -0.035 4.035 13 C -0.199 4.199 14 C 0.038 3.962 15 C -0.283 4.283 16 C 0.555 3.445 17 O -0.560 6.560 18 N -0.733 5.733 19 C 0.127 3.873 20 C -0.097 4.097 21 H 0.076 0.924 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.113 4.113 25 C 0.092 3.908 26 H 0.034 0.966 27 N -0.850 5.850 28 C -0.105 4.105 29 C -0.043 4.043 30 C -0.199 4.199 31 H 0.274 0.726 32 H 0.131 0.869 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.399 0.601 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.066 0.934 41 H 0.061 0.939 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.071 0.929 45 H 0.341 0.659 46 H 0.341 0.659 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.118 0.882 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 -27.264 2.269 27.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.164 4.164 3 Si 0.768 3.232 4 H -0.196 1.196 5 H -0.200 1.200 6 H -0.189 1.189 7 C -0.469 4.469 8 H 0.115 0.885 9 O -0.064 6.064 10 C 0.110 3.890 11 C -0.261 4.261 12 C -0.053 4.053 13 C -0.200 4.200 14 C 0.018 3.982 15 C -0.304 4.304 16 C 0.347 3.653 17 O -0.440 6.440 18 N -0.385 5.385 19 C 0.003 3.997 20 C -0.116 4.116 21 H 0.094 0.906 22 C -0.154 4.154 23 C -0.157 4.157 24 C -0.151 4.151 25 C -0.019 4.019 26 H 0.052 0.948 27 N -0.379 5.379 28 C -0.143 4.143 29 C -0.061 4.061 30 C -0.219 4.219 31 H 0.084 0.916 32 H 0.149 0.851 33 H 0.132 0.868 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.233 0.767 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.080 0.920 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.082 0.918 48 H 0.093 0.907 49 H 0.136 0.864 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.075 -26.696 2.907 27.329 hybrid contribution -0.609 0.500 -0.925 1.215 sum 4.465 -26.196 1.982 26.648 Atomic orbital electron populations 1.70011 1.06146 1.28257 1.44062 1.25389 0.95894 0.99134 0.96000 0.85650 0.79022 0.79535 0.78945 1.19635 1.20038 1.18937 1.21478 0.92111 0.80568 1.52743 0.88537 1.83901 1.34967 1.11805 1.75690 1.19615 0.90333 0.87887 0.91154 1.21101 0.93637 0.99136 1.12240 1.20991 0.98600 0.91395 0.94351 1.18467 0.92980 0.92340 1.16195 1.22284 0.99195 0.91005 0.85717 1.22439 0.99699 0.91946 1.16319 1.18416 0.87659 0.83838 0.75432 1.90776 1.14310 1.87386 1.51560 1.45860 1.10132 1.06293 1.76207 1.21293 0.93610 0.82767 1.02066 1.21369 0.97364 0.94007 0.98861 0.90565 1.21631 0.98405 0.98145 0.97235 1.21520 0.97784 0.94282 1.02080 1.21556 0.98428 0.97420 0.97653 1.21305 0.93754 0.89944 0.96908 0.94803 1.58700 1.27704 1.04094 1.47440 1.21490 0.97731 0.92299 1.02793 1.20877 0.92653 0.96872 0.95737 1.20147 0.99756 0.90149 1.11817 0.91603 0.85120 0.86807 0.85951 0.85945 0.76656 0.91714 0.91558 0.91443 0.91571 0.92015 0.91533 0.92327 0.91047 0.84689 0.84590 0.91837 0.90650 0.86431 0.86144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.79 13.67 55.48 0.76 -23.04 16 2 C 0.04 1.10 5.49 -17.51 -0.10 1.00 16 3 Si 0.94 19.49 29.55 -169.99 -5.02 14.47 16 4 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 7 C -0.39 -10.45 9.48 30.91 0.29 -10.16 16 8 H 0.10 2.35 5.18 -52.49 -0.27 2.08 16 9 O -0.16 -4.41 9.74 0.75 0.01 -4.41 16 10 C 0.17 3.82 6.66 -38.88 -0.26 3.57 16 11 C -0.24 -5.01 9.14 -39.47 -0.36 -5.37 16 12 C -0.03 -0.62 9.78 -39.15 -0.38 -1.01 16 13 C -0.20 -3.39 5.87 -105.03 -0.62 -4.01 16 14 C 0.04 0.58 9.45 -37.19 -0.35 0.23 16 15 C -0.28 -3.85 9.41 -37.50 -0.35 -4.21 16 16 C 0.55 7.77 7.74 -13.04 -0.10 7.67 16 17 O -0.56 -9.90 16.23 5.17 0.08 -9.81 16 18 N -0.73 -7.39 5.28 -61.75 -0.33 -7.72 16 19 C 0.13 1.14 5.06 -4.04 -0.02 1.12 16 20 C -0.10 -0.61 2.23 -90.62 -0.20 -0.81 16 21 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 22 C -0.12 -0.71 5.08 -26.73 -0.14 -0.85 16 23 C -0.12 -0.64 5.92 -26.73 -0.16 -0.80 16 24 C -0.11 -0.64 5.50 -26.74 -0.15 -0.78 16 25 C 0.09 0.52 3.24 -67.74 -0.22 0.30 16 26 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 27 N -0.85 -4.45 9.25 -4.69 -0.04 -4.49 16 28 C -0.10 -0.65 4.74 -26.76 -0.13 -0.77 16 29 C -0.04 -0.73 9.40 -39.15 -0.37 -1.10 16 30 C -0.20 -3.98 9.97 -39.47 -0.39 -4.37 16 31 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 33 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 34 H 0.12 1.87 7.52 -52.49 -0.39 1.48 16 35 H 0.12 1.42 6.07 -52.49 -0.32 1.10 16 36 H 0.40 3.03 7.63 -40.82 -0.31 2.72 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.40 7.18 -51.93 -0.37 0.03 16 41 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.34 1.36 9.04 -39.29 -0.36 1.00 16 46 H 0.34 1.45 8.99 -39.29 -0.35 1.10 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.12 1.62 6.16 -52.48 -0.32 1.29 16 50 H 0.12 2.28 8.06 -52.48 -0.42 1.86 16 LS Contribution 406.59 15.07 6.13 6.13 Total: -1.00 -31.12 406.59 -10.04 -41.16 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: -7.63 Total: 8.05 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: -4.00 Total: -20.35 kcal Atomic # 7 Polarization: -35.63 SS G_CDS: 0.39 Total: -35.24 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: 0.09 Total: -14.22 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.12 -10.04 -41.16 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493650887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.849 kcal (2) G-P(sol) polarization free energy of solvation -31.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds