Wall clock time and date at job start Wed Apr 1 2020 03:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86796 * 119.99700 * 2 1 4 4 H 1.48497 * 109.47077 * 269.99909 * 3 2 1 5 5 H 1.48502 * 109.47376 * 30.00254 * 3 2 1 6 6 H 1.48505 * 109.47200 * 150.00002 * 3 2 1 7 7 C 1.38722 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99378 * 179.97438 * 7 2 1 9 9 O 1.34779 * 120.00087 * 359.97438 * 7 2 1 10 10 C 1.35569 * 117.00065 * 185.05638 * 9 7 2 11 11 C 1.39180 * 119.89732 * 354.44417 * 10 9 7 12 12 C 1.37594 * 120.09869 * 179.97438 * 11 10 9 13 13 C 1.40020 * 119.90052 * 359.97438 * 12 11 10 14 14 C 1.46964 * 120.09824 * 180.02562 * 13 12 11 15 15 C 1.35024 * 119.99504 * 180.02562 * 14 13 12 16 16 C 1.46261 * 119.99807 * 180.02562 * 15 14 13 17 17 O 1.21722 * 119.99598 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99815 * 179.72880 * 16 15 14 19 19 C 1.46500 * 119.99784 * 180.27468 * 18 16 15 20 20 C 1.53000 * 109.47274 * 179.97438 * 19 18 16 21 21 H 1.08993 * 109.46970 * 54.99607 * 20 19 18 22 22 C 1.53006 * 109.46753 * 294.99997 * 20 19 18 23 23 C 1.53000 * 109.46753 * 180.02562 * 22 20 19 24 24 C 1.52994 * 109.47221 * 59.99922 * 23 22 20 25 25 C 1.52998 * 109.47406 * 299.99915 * 24 23 22 26 26 H 1.09000 * 109.47204 * 300.00344 * 25 24 23 27 27 N 1.46899 * 109.47316 * 180.02562 * 25 24 23 28 28 C 1.52993 * 109.47235 * 175.00315 * 20 19 18 29 29 C 1.40017 * 119.79754 * 0.28060 * 13 12 11 30 30 C 1.37600 * 119.89869 * 359.44353 * 29 13 12 31 31 H 0.97000 * 120.00299 * 0.02562 * 1 2 3 32 32 H 1.08002 * 119.94431 * 359.95745 * 11 10 9 33 33 H 1.08007 * 120.04682 * 180.02562 * 12 11 10 34 34 H 1.07990 * 120.00291 * 0.02562 * 14 13 12 35 35 H 1.08000 * 120.00212 * 0.02562 * 15 14 13 36 36 H 0.96999 * 120.00104 * 0.27495 * 18 16 15 37 37 H 1.08999 * 109.47268 * 300.00052 * 19 18 16 38 38 H 1.09000 * 109.47122 * 59.99487 * 19 18 16 39 39 H 1.08992 * 109.47096 * 300.00107 * 22 20 19 40 40 H 1.09001 * 109.47104 * 59.99920 * 22 20 19 41 41 H 1.09007 * 109.47071 * 299.99584 * 23 22 20 42 42 H 1.09006 * 109.46662 * 180.02562 * 23 22 20 43 43 H 1.09001 * 109.46836 * 179.97438 * 24 23 22 44 44 H 1.09000 * 109.47220 * 60.00250 * 24 23 22 45 45 H 1.00895 * 110.99945 * 60.00046 * 27 25 24 46 46 H 1.00898 * 110.99910 * 183.95727 * 27 25 24 47 47 H 1.09006 * 109.46891 * 299.99883 * 28 20 19 48 48 H 1.08993 * 109.47719 * 59.99751 * 28 20 19 49 49 H 1.08005 * 120.04938 * 179.72239 * 29 13 12 50 50 H 1.08005 * 119.95294 * 180.25347 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0464 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0087 -1.2014 0.0005 8 1 3.0887 -1.2012 0.0001 9 8 1.3348 -2.3686 0.0016 10 6 2.0692 -3.5031 0.1085 11 6 3.4592 -3.4338 0.0941 12 6 4.2085 -4.5826 0.2029 13 6 3.5707 -5.8227 0.3288 14 6 4.3669 -7.0525 0.4458 15 6 3.7496 -8.2473 0.5666 16 6 4.5419 -9.4711 0.6837 17 8 5.7576 -9.4125 0.6717 18 7 3.9258 -10.6632 0.8097 19 6 4.7195 -11.8884 0.9330 20 6 3.7833 -13.0917 1.0623 21 1 3.0908 -13.1052 0.2207 22 6 2.9953 -12.9865 2.3696 23 6 2.0595 -14.1901 2.4992 24 6 2.8839 -15.4789 2.5028 25 6 3.6719 -15.5841 1.1956 26 1 2.9794 -15.5981 0.3540 27 7 4.4630 -16.8219 1.1989 28 6 4.6072 -14.3808 1.0658 29 6 2.1721 -5.8881 0.3374 30 6 1.4308 -4.7335 0.2338 31 1 -0.4850 0.8400 -0.0004 32 1 3.9502 -2.4767 -0.0029 33 1 5.2872 -4.5278 0.1920 34 1 5.4455 -7.0005 0.4353 35 1 2.6709 -8.2993 0.5768 36 1 2.9570 -10.7099 0.8188 37 1 5.3443 -12.0072 0.0479 38 1 5.3521 -11.8240 1.8183 39 1 3.6878 -12.9729 3.2111 40 1 2.4083 -12.0680 2.3672 41 1 1.3669 -14.2041 1.6575 42 1 1.4978 -14.1149 3.4303 43 1 2.2173 -16.3363 2.5956 44 1 3.5764 -15.4649 3.3444 45 1 3.8670 -17.6316 1.2834 46 1 5.0418 -16.8833 0.3747 47 1 5.1686 -14.4557 0.1344 48 1 5.2997 -14.3673 1.9073 49 1 1.6759 -6.8430 0.4298 50 1 0.3519 -4.7825 0.2445 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493650887.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:31 Heat of formation + Delta-G solvation = -71.295546 kcal Electronic energy + Delta-G solvation = -27891.064951 eV Core-core repulsion = 23881.863953 eV Total energy + Delta-G solvation = -4009.200997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.97643 -40.72147 -39.72905 -38.48685 -36.23754 -34.72868 -34.14914 -33.95494 -32.29260 -31.95735 -29.82567 -28.94315 -27.60074 -26.86691 -24.40836 -23.66381 -23.21233 -22.18918 -21.72359 -20.80775 -20.49665 -19.71973 -18.84049 -18.23389 -17.07730 -16.54957 -16.44145 -16.38109 -16.27041 -16.00953 -15.92269 -15.85586 -15.60977 -15.31111 -15.04952 -14.91376 -14.63923 -14.50102 -14.10309 -13.65830 -13.59786 -13.35209 -13.29341 -13.15907 -12.95761 -12.70744 -12.62119 -12.56082 -12.50436 -12.20566 -12.12744 -11.94806 -11.48345 -11.36351 -11.21164 -11.10767 -11.03033 -10.91265 -10.57793 -10.04525 -9.88683 -9.58315 -8.67307 -8.51912 -6.18092 -0.23602 0.59068 1.14530 1.36094 1.46066 1.53091 2.15546 2.29227 2.38855 2.86971 3.18358 3.42958 3.46950 3.63737 3.72292 3.83879 3.95453 4.08222 4.09244 4.18968 4.27319 4.31609 4.35368 4.38874 4.48775 4.52897 4.54821 4.57684 4.66445 4.68059 4.77199 4.86932 4.95210 5.03562 5.09575 5.15646 5.20085 5.24421 5.27811 5.29346 5.31231 5.34274 5.34873 5.47533 5.57147 5.60358 5.64491 5.82171 5.97630 6.11080 6.29035 6.61335 6.62566 6.92520 7.30767 7.69536 8.70082 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.031773 B = 0.001404 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.041115 B =19938.095663 C =20613.859129 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.017 4.017 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.253 1.253 7 C -0.418 4.418 8 H 0.105 0.895 9 O -0.220 6.220 10 C 0.129 3.871 11 C -0.249 4.249 12 C -0.041 4.041 13 C -0.170 4.170 14 C 0.014 3.986 15 C -0.244 4.244 16 C 0.548 3.452 17 O -0.598 6.598 18 N -0.712 5.712 19 C 0.127 3.873 20 C -0.084 4.084 21 H 0.088 0.912 22 C -0.116 4.116 23 C -0.115 4.115 24 C -0.111 4.111 25 C 0.094 3.906 26 H 0.039 0.961 27 N -0.858 5.858 28 C -0.102 4.102 29 C -0.037 4.037 30 C -0.206 4.206 31 H 0.275 0.725 32 H 0.124 0.876 33 H 0.143 0.857 34 H 0.123 0.877 35 H 0.153 0.847 36 H 0.415 0.585 37 H 0.057 0.943 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.348 0.652 46 H 0.347 0.653 47 H 0.065 0.935 48 H 0.062 0.938 49 H 0.161 0.839 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.194 -30.514 2.373 31.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.216 4.216 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.195 1.195 6 H -0.177 1.177 7 C -0.493 4.493 8 H 0.122 0.878 9 O -0.125 6.125 10 C 0.077 3.923 11 C -0.268 4.268 12 C -0.059 4.059 13 C -0.171 4.171 14 C -0.006 4.006 15 C -0.265 4.265 16 C 0.339 3.661 17 O -0.481 6.481 18 N -0.364 5.364 19 C 0.003 3.997 20 C -0.103 4.103 21 H 0.107 0.893 22 C -0.154 4.154 23 C -0.153 4.153 24 C -0.149 4.149 25 C -0.017 4.017 26 H 0.057 0.943 27 N -0.390 5.390 28 C -0.141 4.141 29 C -0.055 4.055 30 C -0.225 4.225 31 H 0.084 0.916 32 H 0.142 0.858 33 H 0.161 0.839 34 H 0.141 0.859 35 H 0.171 0.829 36 H 0.253 0.747 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.090 0.910 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.161 0.839 46 H 0.160 0.840 47 H 0.084 0.916 48 H 0.080 0.920 49 H 0.179 0.821 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.934 -30.046 3.016 30.775 hybrid contribution -0.664 0.815 -0.897 1.382 sum 5.270 -29.232 2.119 29.778 Atomic orbital electron populations 1.70144 1.08037 1.29085 1.47737 1.26586 0.96807 1.02706 0.95475 0.84598 0.77884 0.74537 0.79319 1.18763 1.19531 1.17656 1.21896 0.92713 0.81251 1.53485 0.87759 1.83882 1.36219 1.12751 1.79651 1.20200 0.91536 0.88056 0.92536 1.21196 0.93087 1.00096 1.12410 1.21314 1.00074 0.90757 0.93778 1.18785 0.93287 0.92796 1.12250 1.22165 0.99218 0.90671 0.88561 1.22781 1.01121 0.91138 1.11455 1.18559 0.87160 0.84945 0.75430 1.90780 1.16058 1.87998 1.53270 1.45751 1.11127 1.05573 1.73941 1.21354 0.94010 0.83168 1.01166 1.21270 0.96886 0.92661 0.99519 0.89328 1.21627 0.98336 0.98820 0.96572 1.21493 0.97604 0.93597 1.02607 1.21540 0.98306 0.97939 0.97157 1.21264 0.93616 0.89785 0.97019 0.94278 1.58691 1.28047 1.04330 1.47899 1.21455 0.97684 0.92621 1.02340 1.21289 0.92587 0.97520 0.94116 1.20425 1.00393 0.90132 1.11578 0.91600 0.85812 0.83895 0.85905 0.82932 0.74732 0.92450 0.92753 0.92482 0.91035 0.91192 0.91248 0.91736 0.92371 0.83876 0.84011 0.91644 0.91960 0.82136 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.23 13.67 21.62 0.30 -53.93 16 2 C -0.02 -0.93 5.49 84.86 0.47 -0.46 16 3 Si 1.02 41.45 29.55 68.60 2.03 43.48 16 4 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 5 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 6 H -0.25 -9.60 7.11 99.48 0.71 -8.89 16 7 C -0.42 -23.50 9.48 67.94 0.64 -22.86 16 8 H 0.11 5.37 5.18 -2.91 -0.02 5.36 16 9 O -0.22 -12.73 9.74 -20.24 -0.20 -12.92 16 10 C 0.13 6.12 6.66 22.72 0.15 6.27 16 11 C -0.25 -10.44 9.14 22.34 0.20 -10.23 16 12 C -0.04 -1.40 9.78 22.55 0.22 -1.18 16 13 C -0.17 -5.27 5.87 -20.13 -0.12 -5.39 16 14 C 0.01 0.37 9.45 23.82 0.23 0.59 16 15 C -0.24 -5.47 9.41 23.62 0.22 -5.25 16 16 C 0.55 13.34 7.74 86.33 0.67 14.01 16 17 O -0.60 -19.69 16.23 -4.42 -0.07 -19.76 16 18 N -0.71 -11.65 5.28 -467.49 -2.47 -14.12 16 19 C 0.13 1.97 5.06 86.38 0.44 2.40 16 20 C -0.08 -0.83 2.23 -10.79 -0.02 -0.85 16 21 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 22 C -0.12 -1.09 5.08 30.60 0.16 -0.94 16 23 C -0.12 -0.92 5.92 30.59 0.18 -0.74 16 24 C -0.11 -1.02 5.50 30.59 0.17 -0.86 16 25 C 0.09 0.85 3.24 44.90 0.15 1.00 16 26 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 27 N -0.86 -7.46 9.25 -168.75 -1.56 -9.02 16 28 C -0.10 -1.06 4.74 30.57 0.14 -0.92 16 29 C -0.04 -1.15 9.40 22.55 0.21 -0.94 16 30 C -0.21 -8.14 9.97 22.34 0.22 -7.92 16 31 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 32 H 0.12 5.26 5.62 -2.91 -0.02 5.25 16 33 H 0.14 3.98 8.06 -2.91 -0.02 3.95 16 34 H 0.12 3.37 7.52 -2.92 -0.02 3.35 16 35 H 0.15 2.50 6.07 -2.91 -0.02 2.48 16 36 H 0.42 4.26 7.63 -92.71 -0.71 3.55 16 37 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.07 0.60 7.18 -2.39 -0.02 0.58 16 41 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 42 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 43 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.35 2.14 9.04 -89.70 -0.81 1.33 16 46 H 0.35 2.35 8.99 -89.70 -0.81 1.54 16 47 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 48 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.16 3.50 6.16 -2.91 -0.02 3.49 16 50 H 0.12 4.70 8.06 -2.91 -0.02 4.68 16 Total: -1.00 -72.88 406.59 1.01 -71.87 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: -1.34 Total: 28.68 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 4.33 Total: -34.26 kcal Atomic # 7 Polarization: -73.34 SS G_CDS: -3.73 Total: -77.07 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: -0.27 Total: -32.69 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -72.88 1.01 -71.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493650887.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.573 kcal (2) G-P(sol) polarization free energy of solvation -72.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds