Wall clock time and date at job start Wed Apr 1 2020 03:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00192 * 2 1 4 4 H 1.48501 * 109.47539 * 270.00277 * 3 2 1 5 5 H 1.48502 * 109.47115 * 30.00361 * 3 2 1 6 6 H 1.48504 * 109.47162 * 150.00153 * 3 2 1 7 7 C 1.38720 * 119.99613 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00164 * 359.97438 * 7 2 1 9 9 O 1.34778 * 119.99706 * 179.97438 * 7 2 1 10 10 C 1.35576 * 117.00237 * 185.05336 * 9 7 2 11 11 C 1.39176 * 119.89326 * 354.45353 * 10 9 7 12 12 C 1.37604 * 120.09824 * 180.02562 * 11 10 9 13 13 C 1.40020 * 119.89504 * 359.97438 * 12 11 10 14 14 C 1.46961 * 120.09766 * 179.97438 * 13 12 11 15 15 C 1.35016 * 120.00254 * 180.02562 * 14 13 12 16 16 C 1.46263 * 120.00267 * 179.72394 * 15 14 13 17 17 O 1.21721 * 119.99512 * 0.27498 * 16 15 14 18 18 N 1.34771 * 119.99901 * 180.27474 * 16 15 14 19 19 C 1.46496 * 119.99870 * 180.02562 * 18 16 15 20 20 C 1.53008 * 109.47310 * 179.97438 * 19 18 16 21 21 H 1.08998 * 109.46567 * 55.00307 * 20 19 18 22 22 C 1.52997 * 109.46952 * 294.99966 * 20 19 18 23 23 C 1.53001 * 109.46712 * 179.97438 * 22 20 19 24 24 C 1.53004 * 109.47142 * 60.00293 * 23 22 20 25 25 C 1.53002 * 109.46870 * 299.99956 * 24 23 22 26 26 H 1.08999 * 109.46542 * 180.02562 * 25 24 23 27 27 N 1.46901 * 109.46833 * 299.99694 * 25 24 23 28 28 C 1.52994 * 109.47081 * 59.99803 * 25 24 23 29 29 C 1.40020 * 119.80456 * 0.25429 * 13 12 11 30 30 C 1.37604 * 119.89207 * 359.49130 * 29 13 12 31 31 H 0.97008 * 119.99833 * 359.97438 * 1 2 3 32 32 H 1.07998 * 119.95069 * 359.97438 * 11 10 9 33 33 H 1.07994 * 120.04666 * 180.02562 * 12 11 10 34 34 H 1.08000 * 119.99793 * 359.97438 * 14 13 12 35 35 H 1.08000 * 119.99952 * 0.02562 * 15 14 13 36 36 H 0.96999 * 120.00299 * 359.97438 * 18 16 15 37 37 H 1.09000 * 109.47255 * 299.99893 * 19 18 16 38 38 H 1.08999 * 109.47233 * 59.99627 * 19 18 16 39 39 H 1.08997 * 109.47023 * 299.99623 * 22 20 19 40 40 H 1.09004 * 109.46943 * 60.00053 * 22 20 19 41 41 H 1.08997 * 109.47393 * 299.99793 * 23 22 20 42 42 H 1.09005 * 109.47052 * 179.97438 * 23 22 20 43 43 H 1.08997 * 109.46947 * 179.97438 * 24 23 22 44 44 H 1.09004 * 109.46733 * 59.99522 * 24 23 22 45 45 H 1.00906 * 111.00170 * 300.00140 * 27 25 24 46 46 H 1.00893 * 111.00008 * 63.95559 * 27 25 24 47 47 H 1.09005 * 109.46931 * 180.02562 * 28 25 24 48 48 H 1.08997 * 109.47227 * 60.00428 * 28 25 24 49 49 H 1.07998 * 120.05304 * 179.74514 * 29 13 12 50 50 H 1.07997 * 119.94761 * 180.27601 * 30 29 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0086 -1.2014 -0.0005 8 1 1.4686 -2.1367 -0.0005 9 8 3.3564 -1.2014 -0.0011 10 6 3.9719 -2.4047 -0.1080 11 6 3.2168 -3.5737 -0.0942 12 6 3.8371 -4.7972 -0.2019 13 6 5.2302 -4.8648 -0.3260 14 6 5.8974 -6.1692 -0.4408 15 6 7.2408 -6.2322 -0.5598 16 6 7.9054 -7.5306 -0.6679 17 8 7.2468 -8.5542 -0.6556 18 7 9.2469 -7.5936 -0.7812 19 6 9.9125 -8.8941 -0.8900 20 6 11.4238 -8.6855 -1.0067 21 1 11.7738 -8.0872 -0.1655 22 6 11.7387 -7.9588 -2.3157 23 6 13.2499 -7.7496 -2.4319 24 6 13.9551 -9.1073 -2.4199 25 6 13.6400 -9.8341 -1.1109 26 1 14.1429 -10.8011 -1.1022 27 7 14.1115 -9.0274 0.0227 28 6 12.1289 -10.0432 -0.9947 29 6 5.9862 -3.6863 -0.3345 30 6 5.3567 -2.4670 -0.2316 31 1 -0.4850 0.8401 0.0004 32 1 2.1424 -3.5205 0.0019 33 1 3.2503 -5.7038 -0.1916 34 1 5.3132 -7.0775 -0.4290 35 1 7.8252 -5.3240 -0.5703 36 1 9.7716 -6.7779 -0.7913 37 1 9.6949 -9.4891 -0.0030 38 1 9.5486 -9.4155 -1.7754 39 1 11.3886 -8.5572 -3.1567 40 1 11.2366 -6.9913 -2.3240 41 1 13.5996 -7.1510 -1.5908 42 1 13.4744 -7.2322 -3.3648 43 1 15.0316 -8.9583 -2.5032 44 1 13.6053 -9.7059 -3.2611 45 1 15.1075 -8.8751 -0.0312 46 1 13.6140 -8.1511 0.0745 47 1 11.9044 -10.5605 -0.0618 48 1 11.7792 -10.6418 -1.8357 49 1 7.0612 -3.7340 -0.4259 50 1 5.9385 -1.5572 -0.2425 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493650891.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:39 Heat of formation + Delta-G solvation = -45.701709 kcal Electronic energy + Delta-G solvation = -28133.359991 eV Core-core repulsion = 24125.268826 eV Total energy + Delta-G solvation = -4008.091165 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.189 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.21753 -39.43310 -39.09832 -37.06979 -35.41028 -33.25180 -32.94748 -32.46864 -31.69035 -30.53296 -28.99006 -28.50969 -26.36619 -25.46223 -23.18624 -22.91806 -22.29267 -21.61422 -20.76476 -19.62875 -19.23652 -18.09715 -17.46590 -17.17086 -16.66317 -15.95889 -15.69814 -15.26236 -15.18662 -14.94703 -14.94164 -14.65301 -14.11965 -14.06244 -13.97348 -13.91017 -13.57719 -13.10501 -12.85333 -12.70063 -12.62587 -12.44363 -12.40684 -12.38951 -12.26075 -11.87703 -11.80168 -11.60012 -11.20116 -11.02711 -10.98374 -10.77064 -10.71017 -10.63584 -10.28075 -9.81855 -9.65904 -9.55101 -9.15077 -9.14843 -8.91187 -8.47270 -7.24392 -6.60585 -4.24384 0.99437 2.03054 2.48109 3.11408 3.15264 3.19406 3.28481 3.53681 4.05635 4.08467 4.11147 4.21120 4.28083 4.42811 4.62397 4.62900 4.69404 4.75293 4.92270 4.93731 4.94813 4.98537 5.07862 5.16086 5.17918 5.32266 5.41759 5.43276 5.46490 5.54242 5.56452 5.59970 5.62258 5.65085 5.76483 5.83741 5.93665 5.94442 6.02210 6.28744 6.33575 6.45111 6.52916 6.67298 6.68305 6.92628 6.95995 7.08689 7.16190 7.41518 7.51313 7.62605 7.83908 8.31485 8.72744 9.33002 10.45682 Molecular weight = 344.19amu Principal moments of inertia in cm(-1) A = 0.024075 B = 0.001507 C = 0.001442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.742805 B =18576.408327 C =19409.057354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.066 3.934 3 Si 0.907 3.093 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.258 1.258 7 C -0.392 4.392 8 H 0.111 0.889 9 O -0.203 6.203 10 C 0.173 3.827 11 C -0.229 4.229 12 C -0.037 4.037 13 C -0.189 4.189 14 C 0.035 3.965 15 C -0.278 4.278 16 C 0.554 3.446 17 O -0.558 6.558 18 N -0.732 5.732 19 C 0.126 3.874 20 C -0.100 4.100 21 H 0.079 0.921 22 C -0.118 4.118 23 C -0.121 4.121 24 C -0.156 4.156 25 C 0.092 3.908 26 H 0.081 0.919 27 N -0.845 5.845 28 C -0.105 4.105 29 C -0.046 4.046 30 C -0.199 4.199 31 H 0.283 0.717 32 H 0.137 0.863 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.399 0.601 37 H 0.066 0.934 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.068 0.932 45 H 0.339 0.661 46 H 0.340 0.660 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.120 0.880 50 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.640 -15.018 -3.742 30.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.467 4.467 8 H 0.128 0.872 9 O -0.105 6.105 10 C 0.119 3.881 11 C -0.249 4.249 12 C -0.055 4.055 13 C -0.190 4.190 14 C 0.015 3.985 15 C -0.299 4.299 16 C 0.346 3.654 17 O -0.438 6.438 18 N -0.384 5.384 19 C 0.002 3.998 20 C -0.119 4.119 21 H 0.098 0.902 22 C -0.155 4.155 23 C -0.159 4.159 24 C -0.196 4.196 25 C -0.020 4.020 26 H 0.099 0.901 27 N -0.376 5.376 28 C -0.143 4.143 29 C -0.064 4.064 30 C -0.219 4.219 31 H 0.093 0.907 32 H 0.155 0.845 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.233 0.767 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.087 0.913 45 H 0.151 0.849 46 H 0.155 0.845 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.137 0.863 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 25.756 -15.965 -3.241 30.475 hybrid contribution 0.695 1.826 -0.814 2.117 sum 26.451 -14.138 -4.056 30.265 Atomic orbital electron populations 1.69620 1.05699 1.28968 1.45967 1.24536 0.95077 0.99077 0.95216 0.86159 0.80380 0.81118 0.79176 1.19654 1.20512 1.18211 1.20878 0.76647 0.96927 1.52245 0.87195 1.83503 1.22959 1.26203 1.77873 1.19363 0.91759 0.85358 0.91662 1.21225 1.01378 0.91677 1.10572 1.21048 0.93078 0.97075 0.94342 1.18530 0.93391 0.92020 1.15062 1.22303 0.93994 0.96296 0.85916 1.22468 0.95887 0.95801 1.15731 1.18405 0.81596 0.89942 0.75496 1.90784 1.64846 1.36869 1.51330 1.45855 1.07170 1.09089 1.76305 1.21309 0.90744 0.85566 1.02133 1.21401 0.94181 0.97796 0.98483 0.90227 1.21647 0.95648 1.00741 0.97481 1.21535 0.95492 0.96980 1.01907 1.22372 1.00108 0.97334 0.99759 1.21409 0.95672 0.96972 0.87943 0.90106 1.58993 1.09394 1.24087 1.45088 1.21530 0.93604 0.96308 1.02902 1.20879 0.98496 0.91070 0.95933 1.20142 0.91819 0.98011 1.11900 0.90661 0.84497 0.86512 0.85775 0.85927 0.76716 0.91528 0.91682 0.91492 0.91617 0.92249 0.91711 0.92148 0.91332 0.84864 0.84456 0.90732 0.91171 0.86269 0.86138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.91 13.96 55.48 0.77 -23.13 16 2 C 0.07 1.77 5.49 -17.51 -0.10 1.67 16 3 Si 0.91 20.57 28.62 -169.99 -4.86 15.70 16 4 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 5 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.39 -10.50 9.94 30.91 0.31 -10.19 16 8 H 0.11 3.00 5.41 -52.49 -0.28 2.72 16 9 O -0.20 -5.05 8.57 0.73 0.01 -5.05 16 10 C 0.17 3.77 6.66 -38.89 -0.26 3.51 16 11 C -0.23 -4.69 9.14 -39.46 -0.36 -5.05 16 12 C -0.04 -0.65 9.78 -39.15 -0.38 -1.03 16 13 C -0.19 -3.08 5.87 -105.03 -0.62 -3.70 16 14 C 0.03 0.51 9.45 -37.19 -0.35 0.16 16 15 C -0.28 -3.60 9.41 -37.50 -0.35 -3.95 16 16 C 0.55 7.47 7.74 -13.04 -0.10 7.37 16 17 O -0.56 -9.63 16.23 5.17 0.08 -9.54 16 18 N -0.73 -6.99 5.28 -61.75 -0.33 -7.32 16 19 C 0.13 1.08 5.07 -4.04 -0.02 1.06 16 20 C -0.10 -0.58 1.96 -90.62 -0.18 -0.75 16 21 H 0.08 0.46 6.57 -51.93 -0.34 0.12 16 22 C -0.12 -0.63 5.08 -26.73 -0.14 -0.76 16 23 C -0.12 -0.55 5.66 -26.73 -0.15 -0.70 16 24 C -0.16 -0.69 5.61 -26.73 -0.15 -0.84 16 25 C 0.09 0.46 3.69 -67.71 -0.25 0.21 16 26 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 27 N -0.84 -4.31 9.12 -4.67 -0.04 -4.35 16 28 C -0.11 -0.59 4.92 -26.74 -0.13 -0.72 16 29 C -0.05 -0.72 9.40 -39.15 -0.37 -1.09 16 30 C -0.20 -3.68 9.97 -39.47 -0.39 -4.07 16 31 H 0.28 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.14 2.92 5.62 -52.49 -0.29 2.63 16 33 H 0.12 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.12 1.84 7.52 -52.49 -0.39 1.44 16 35 H 0.12 1.32 6.07 -52.49 -0.32 1.00 16 36 H 0.40 2.80 7.63 -40.82 -0.31 2.49 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.36 7.18 -51.93 -0.37 -0.02 16 41 H 0.06 0.25 6.76 -51.93 -0.35 -0.10 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 44 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.34 1.34 9.04 -39.29 -0.36 0.98 16 46 H 0.34 1.63 5.44 -39.30 -0.21 1.42 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.12 1.50 6.16 -52.49 -0.32 1.18 16 50 H 0.12 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 399.05 15.07 6.01 6.01 Total: -1.00 -30.06 399.05 -9.69 -39.75 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -7.35 Total: 6.80 kcal Atomic # 6 Polarization: -14.88 SS G_CDS: -3.99 Total: -18.88 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.41 Total: -34.80 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.09 Total: -14.59 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -4.86 Total: 15.70 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -30.06 -9.69 -39.75 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493650891.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.951 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds